Fungal biomass changes during the decomposition of leaves of Michelia nilagirica and Semecarpus coriaceae in an upper montane rainforest in Sri Lanka

The agar-film method was used to assess fungal biomass and standing crop in several analogous decomposition stages of two leaf species (the fast decomposing Michelia nilagirica and the slow decomposing Semecarpus coriaceae), both from an upper montane rainforest in Sri Lanka. At all decomposition stages the fungal biomass on Michelia litter was significantly higher (P<0.001) than for Semecarpus and had developed much more rapidly (17.04 mg g⁻¹ at the first decomposition stage compared with 4.39 mg g⁻¹ for Semecarpus). These figures are considerably higher than those for a cool temperate deciduous forest, but when the data are given as fungal biomass per area the reverse is true. Data are given on the contribution of different hyphal types showing a trend for change (hyaline to dark hyphae) during the course of decomposition. The mass of dead hyphae is considerably lower than data from temperate forests. Data on immobilization of C and of plant nutrients (N, P, K, Ca, Mg and Na) are provided plus hyphal nutrient contents expressed as % of total contents in the leaf litter. These data are comparable to those from temperate forests.     

Annual population dynamics and production ecology of Testacea (Protozoa,Rhizopoda) in an aspen woodland soil

The population studies of Testacea in an aspen woodland soil revealed 28 taxa of living Testacea, 14 of which were considered constant. The 14 species, while comprising 98 and 96% of the mean annual density and total annual production numbers respectively, accounted for only 80% of the mean annual biomass and 86% of the total annual production biomass. All 14 species had a peak in abundance in autumn, immediately or soon after leaf litter fall. While most species maintained small, active and reproducing populations over the winter period, some maintained higher than normal densities, had seasonal peaks in abundance and biomass, or higher than normal rates of production and turnover. All species had an increase in reproduction and usually in abundance also during the late winter-early spring period before spring thaw. The annual mean weekly density and biomass and the annual production totals tor numbers and biomass were highest in the H layer and lowest in the L. The F layer produced the highest numbers of generations per year and the highest annual mean weekly biomass turnover rate for most of the species. The majority of the periods of high intrinsic rate of natural increase, biomass production and turnover occurred during or after an increase, a decrease or a stabilization in soil moisture content. Mean annual biomass and total annual production were estimated as 0.72 and 206 g wet weight m^?2 respectively. The aspen woodland soil Testacea (in a mor humus) had a much higher production and number of generations per year than Testacea from mull and moder humus forms.Total annual ingestion, respiration losses and egestion losses for testate amoebae in an aspen woodland soil were calculated as 1377, 344 and 826 g wet weight of biomass m^?2, respectively. The annual secondary production of Testacea was about 250–300 times the standing crop of Testacea in all the soil layers. The dry weight of carbon respired per year by the Testacea was estimated as 16.2 g m^?2, which amounted to about 6% of the total carbon input.     

Comparison of transcutaneous ultrasound over the right flank with transrectal ultrasound for pregnancy diagnosis in the dairy cow

Objective   Evaluate the sensitivity and specificity of transrectal ultrasound and transcutaneous ultrasonography across the right flank between days 31 and 196 of pregnancy in the dairy cow.
Procedure   Pregnancy status and stage of gestation at date of pregnancy diagnosis by transcutaneous and transrectal ultrasonography were determined for 1570 dairy cattle. Sensitivity and specificity values and probabilities of a correct diagnosis for both techniques were determined and compared. Possible effects of gestational age, herd, method of transcutaneous ultrasound diagnosis, cow age, cow and bull breed, and calf sex on the determination of a correct diagnosis of pregnancy status were evaluated for both techniques.
Results   The overall sensitivity and probability of a correct diagnosis of pregnancy status from days 31 to 196 of gestation were significantly higher when using transrectal ultrasound relative to transcutaneous ultrasound over the right flank. However, the sensitivity of transcutaneous ultrasound changed over the course of pregnancy: it was low (7–8%) before day 84, increased to 89% between days 141 and 154, and was close to 100% thereafter. The specificity of both methods did not differ significantly. Herd and gestational age at date of pregnancy diagnosis were significantly associated with making a correct test result using transcutaneous ultrasound, although only the latter predictor was significantly associated with making a correct test result using transrectal ultrasound.
Conclusion   Transcutaneous ultrasound can not be recommended as an accurate method for early pregnancy diagnosis in the dairy cow, particularly on a whole-herd basis. However, if pregnancy testing is undertaken in mid to late gestation, this technique could provide an accurate and rapid alternative to transrectal ultrasound or manual palpation per rectum.     

Association between gestational age and bovine fetal characteristics measured by transcutaneous ultrasound over the right flank of the dairy cow

Objective   To determine bovine fetal characteristics significantly associated with increasing gestational age as measured via transcutaneous ultrasonography over the right flank.
Methods   The length of gestation at date of pregnancy diagnosis via transcutaneous and transrectal ultrasonography was determined for 224 dairy cattle by estimation from subsequent calving dates. A separate dataset was created for each measurable fetal characteristic (i.e. thoracic diameter, abdominal diameter, umbilical diameter, placentome length and placentome height) and risk factors significantly associated with gestational age at pregnancy diagnosis within each dataset, including the fetal characteristic, were identified.
Results   Abdominal diameter was the most frequently observed fetal characteristic and thoracic diameter was the least. Gestational age at pregnancy diagnosis (d) was significantly associated with fetal thoracic diameter (P < 0.01), abdominal diameter (P < 0.01) and umbilical diameter (P = 0.02) when measured via transcutaneous ultrasound. Within each model, sire breed, dam breed, dam age and/or calf sex were also significantly associated with gestational age. Gestational age at pregnancy diagnosis was not significantly associated with either placentome height or length (P > 0.05).
Conclusion   Fetal thoracic diameter, abdominal diameter and umbilical diameter were found to be significantly associated with gestational age between approximate days 73 to 190 of gestation. Transcutaneous ultrasonography may prove a useful method of estimating gestational age in the absence of accurate breeding records.     

The incidence and aetiology of clinical bovine mastitis on 14 farms in Northland,New Zealand

AIM: To estimate the incidence of clinical mastitis and the frequency of isolation of mastitis-causing organisms from clinical cases in one lactation season (July 2005 to May 2006) on 14 dairy farms from the Northland region of New Zealand.

METHODS: Cases of clinical mastitis were determined by trained farm personnel who recorded the identity of affected cows. Pooled milk samples from affected quarter(s) were aseptically collected by the farm personnel, for microbiology. Mean numbers of affected cows and quarters were compared at the population and farm level per 305 cow-days-at-risk (DAR).

RESULTS: One or more cases of clinical mastitis occurred in 559/3,765 (14.8%) lactating cows. The average incidence of clinical mastitis was 0.19 cases per 305 DAR. The incidence in rear quarters (56.2%) was 1.3 times (p=0.027) that of front quarters (43.8%). The incidence of clinical mastitis and numbers of affected quarters were signifi cantly infl uenced by the stage of lactation (higher in early lactation), age (higher in older cows) and farm. At the cow level, the most common isolates were Staphylococcus aureus (23.7%) and Streptococcus uberis (23.3%). No causative organisms were identifi ed in 19.9% of the samples. Each cow had an average of 1.8 quarters affected during a case of clinical mastitis.

CONCLUSIONS: This study demonstrated a higher incidence of staphylococcal clinical mastitis on dairy farms from Northland than has been reported in other regions of New Zealand.     

Giardia infection of cats and dogs in New Zealand

Giardia intestinalis is a pathogenic protozoan which infects humans and a wide range of animal hosts, including cats and dogs⁽¹⁾. However, the status of animals in New Zealand with respect to Giardia infection has not received much attention, so we undertook a preliminary study of cats and dogs in Palmerston North and Hamilton to determine the prevalence of infection, as indicated by the presence of cysts in faeces.     

Bodyweights and growth rates of spring- and autumn-born Thoroughbred horses raised on pasture

AIM: To examine the growth of spring- and autumn-born Thoroughbred foals raised on pasture.

METHODS: Bodyweight and growth rates were measured in pasture-raised Thoroughbred horses, born in either spring (n=56) or autumn (n=7), from birth to approximately 13 and 17 months of age.

RESULTS: Birthweight tended to be lower in autumn- than spring-born foals (54.4, SD 7.92 kg vs 57.3, SD 5.90 kg; p=0.08). Between birth and 6 months of age, there was no difference in growth rate at equivalent ages between horses born in spring and autumn. Spring-born horses, which were weaned in the autumn, had lower post-weaning growth rates than autumn-born horses that were weaned in the spring. At time of the late yearling sales (March–April) in the Southern Hemisphere, unadjusted mean bodyweights of autumn-born horses (379.3, SD 24.8 kg) were lower (p=0.017) than those of the spring-born horses (437.2, SD 35.3 kg), although values in the autumn-born horses were all within two standard deviations (SD) of the mean of the spring-born animals. When adjusted for the covariates of birthweight and gender, the difference between spring- and autumn-born horses at that time was not significant (p=0.25).

CONCLUSIONS AND CLINICAL RELEVANCE: Some autumn-born foals could be marketed for late yearling sales in the Southern Hemisphere, on the basis of bodyweight. Furthermore, they might also be competitive in the Northern Hemisphere industry (sales or racing), as they would be competing against horses of the same official age.     

Detection of phytopathogens of the genus Dickeya using a PCR primer prediction pipeline for draft bacterial genome sequences

This study used a novel computational pipeline to exploit draft bacterial genome sequences in order to predict, automatically and rapidly, PCR primer sets for Dickeya spp. that were unbiased in terms of diagnostic gene choice. This pipeline was applied to 16 draft and four complete Dickeya genome sequences to generate >700 primer sets predicted to discriminate between Dickeya at the species level. Predicted diagnostic primer sets for both D. dianthicola (DIA‐A and DIA‐B) and ‘D. solani’ (SOL‐C and SOL‐D) were validated against a panel of 70 Dickeya reference strains, representative of the known diversity of this genus, to confirm primer specificity. The classification of the four previously sequenced strains was re‐examined and evidence of possible misclassification of three of these strains is presented.     

Strategies for mastitis control: dry cow therapy and culling

SUMMARY The effects of three selection strategies for dry cow therapy on prevention of new infections and rate of antibiotic usage were compared. Quarter infection status of 1044 cows in 12 herds was determined by bacteriological methods at drying off, calving and three to five months into the following lactation. Cows that were uninfected at drying off were randomly allocated to treatment (whole udder, dry cow therapy) and non-treatment groups. Infected cows were randomly allocated to whole udder or infected quarter only treatments. The strategies compared were blanket treatment (treat all quarters of all cows), selective cow treatment (treat all quarters of any cow infected in one or more quarters) and selective quarter treatment (treat infected quarters only). Selective cow treatment was identified as the preferred strategy. Blanket treatment resulted in increased antibiotic usage (15.5 vs 6.4 tubes per infection eliminated) with no additional benefit, and selective quarter treatment resulted in a higher new infection rate (6.4%vs 3.9% quarters) in the dry period. The prevalence of infection within a herd at drying off had no influence on new infection rates in the dry period or early lactation. The cure rate after dry cow treatment (mean of 66%) decreased significantly with increasing age (P < 0.001). Cows infected in the previous lactation contributed over 76% of infections at calving and nearly 70% at mid-lactation. To lower the incidence of mastitis in a herd, a greater emphasis on culling of older infected cows and prevention of new infections during lactation is needed.