Cloning and expression of canine interferon-alpha genes in Escherichia coli

We cloned five new subtypes of cDNA encoding canine interferon-alpha (CaIFN-alpha) from a canine epithelial cell line. CaIFN-alphas were divided into two groups by amino acid sequences and a molecular phylogenic tree. Two subtypes of them were expressed in Escherichia coli, and IFN proteins were purified. Recombinant CaIFN-alphas were highly species-specific and showed antiviral activity against Vesicular stomatitis New Jersey virus and canine adenovirus-1 , but not against canine herpesvirus-1.     

粳稻短根基因srt1导入雄性不育保持系的初步研究

 1994至1997年研究了粳稻短根基因srt1导入3个籼稻保持系和3个粳稻保持系的F₁、苗期短根的F₂和F₃的农艺性状及根长表现。结果表明：1) RM1与3个籼稻保持系杂交,F₁植株高达150 cm , 抽穗迟,穗型大,结实率只有43%～47%;而与粳稻保持系杂交,F₁株高125 cm以下,结实率82%~91%。2) F₂短根秧苗移栽大田后,一部分植株逐渐死亡,一部分抽穗成熟,而少部分株型类似保持系的植株株高、结实都正常。3) 六千辛B/RM1组合中苗期短根、成熟期株高结实都正常的F₂植株所衍生的F3株系,种子发芽后11 d以内冠根长度短于六千辛B、Ohchikara、六优1号。     

The relationship between paralarval feeding and morphological changes in the proboscis and beaks of the neon flying squid <Emphasis Type="Italic">Ommastrephes bartramii</Emphasis>

We compared the diet of Ommastrephes bartramii paralarvae with morphological changes in their beaks and proboscis (fused tentacles). The paralarvae were collected north of the Hawaiian Islands during 2001 and 2002 and ranged in mantle length (ML) from 1.1 to 13.2 mm. They fed on crustaceans, including copepods (copepodite stage) and amphipods. The rostral tips of upper and lower beaks began to protrude anteriorly at around 3–4 mm ML, and the smallest paralarva with identifiable prey in its digestive tract was 4.2 mm ML, which suggests that the paralarvae can masticate prey soon after the beaks protrude. The proboscis separated into two tentacles at 9.3–13.2 mm ML, but the newly formed tentacles were weakly developed even in the largest specimen, suggesting that tentacles do not operate functionally and that the arms are used to capture prey.     

Cost–profit analysis of Japanese-type set-net through technology transfer in Rayong,Thailand

The Japanese type of set-net, Otoshi-ami, was introduced to Thailand in 2003 with the aim of assessing its feasibility as a sustainable coastal fisheries management tool for the empowerment of coastal fishers’ communities. All preparations for constructing and installing the set-net in the coastal waters off Mae Rumpheung beach, Rayong Province, Thailand, were carried out by local fishers, with technical advice and support from national and international institutions. The gear was modified and developed to suit the conditions of the fishing ground and target species. Data on the catch and sales trends in Rayong using the set-net were collected for 7 years for statistical analysis; during this period, the gear design and marketing strategies were improved. Simulation analysis for evaluating the cost–profit bases was conducted to establish a model for set-net technology transfer in Southeast Asia, based on differing numbers of fishers and operation days. The simulation results show the required size of the average daily catch to cover the total cost according to the average unit price, where the economic return point is an average catch of 128 kg, based on a unit price of 25 Baht/kg (0.83 USD/kg), with ten fishermen and a daily operation cost of 3,200 Baht (USD 106.17).     

Molecular identification of macroalgal fragments in gut contents of the sea urchin <Emphasis Type="Italic">Hemicentrotus pulcherrimus</Emphasis>

In order to improve the efficiency of stock enhancement programs for the sea urchin Hemicentrotus pulcherrimus, information on food algal species, which affect growth and gonad production greatly, is necessary. Since it is difficult to identify species from the macroalgal fragments within the gut contents of the sea urchin by microscopic observation, we tried to apply a DNA barcoding method for gut contents analysis. We used a partial rbcL gene sequence for taxonomic section and newly designed primer sets, respectively, for brown algae and for red algae. Direct sequencing of the PCR products was carried out. Species identification was based on the phylogenetic relationship. We could objectively identify four species and two taxonomic groups (genus or family) in brown algae, and two species and four taxonomic groups in red algae from the gut contents. Sargassum hemiphyllum was the most abundant brown alga in the gut contents but was not dominant in the study site. The result showed the importance of identification to the species level. In addition, red algal epiphytes were detected with brown algal fragments. The DNA barcoding method will enable the researchers to verify the important role of epiphytes as a potential food source.     

Spatial and temporal variation in the distribution of juvenile southern bluefin tuna Thunnus maccoyii: implication for precise estimation of recruitment abundance indices

Acoustic tags were used to examine the spatial and temporal distribution of southern bluefin tuna (SBT) in southern Western Australia, which is in a region where fishery-independent acoustic surveys of the recruitment abundance index of SBT have been historically undertaken. We investigated patterns of SBT distribution within and inshore of the acoustic survey area during three summer seasons. Annual differences in distribution patterns were characterized by two distinctive migration pathways. An inshore-migrating pathway was observed in two seasons (2004/2005 and 2006/2007), with a relatively high proportion of tagged SBT (84.5, 65.0%) migrating inshore of the acoustic survey area. The other pathway was concentrated along the shelf (2005/2006 season), with an estimated 63.3% of tagged SBT moving within the survey area. These variable migration patterns may bias the interannual fluctuations in abundance indices. Current survey methods can be modified to include both inshore and continental shelf areas. This contribution shows that the accuracy of acoustic surveys can be improved by including ecological patterns.     

Recent races of spinach downy mildew pathogen <Emphasis Type="Italic">Peronospora farinosa</Emphasis> f. sp. <Emphasis Type="Italic">spinaciae</Emphasis> in Japan

Isolates of spinach downy mildew fungus, Peronospora farinosa f. sp. spinaciae, collected at seven sites in Japan from December 2013 to March 2016, were identified as belonging to races 8, 10, 12 and 13, and one was unauthorized. Races 10, 12, 13 and the unauthorized were first found in Japan.     

Effect of nitrogen deposition on CH4 uptake in forest soils in Hokkaido,Japan

Abstract

It has been well documented by short-term artificial experiments that the CH⁴ uptake is inhibited by N input, especially NH^{4 p+}-N input. To investigate the effect of the natural N input by throughfall and other factors on the CH⁴ uptake in forest soils, we measured the CH⁴ uptake rates for 6 months during the snow-free period of the year and N input by throughfall throughout the year at 10 sites in Hokkaido, Japan, from 1997 to 2002. Water filled pore space (WFPS) and pH values in the soils varied widely among the sites (38-93% and 3.9-6.2, respectively). The rates of NH^{4 p+}-N and NH^{3 p-}-N inputs ranged from 1.3 to 6.9 kg N ha^p-1 year^p-1 and from 0.8 to 2.9 kg N ha^p-1 year^p-1, respectively. The NH^{4 p+}-N input was generally higher than the NH^{3 p-}-N input. Total N input by throughfall amounted to 2.3-9.4 kg N ha^p-1 year^p-1. The highest CH⁴ uptake rate occurred within the period from July to September (41-215 μg CH⁴ m^p-2 h^p-1) each year at most sites. CH⁴ uptake rate was relatively low (~50 μg CH⁴ M-2 h^p-1) at northern sites, while a high CH⁴ uptake rate was observed throughout the year 100 (? CH⁴ m^p-2 h^p-1) at southern sites. The mean CH⁴ uptake rates were significantly different among the sites. Cumulative CH⁴ uptake ranged from 1.4 to 6.6 kg CH⁴ ha^p-1 [184 d]^p-1 with a mean values of 3.22 ± 1.36 kg CH⁴ ha^p-1 [184 d]^p-1. Cumulative CH⁴ uptake increased with increasing temperature and decreased with an increase in precipitation (Rain), NH^{4 p+}-N input (TF^NH4) WFPS, soil total C (TC), and total N (TN). There was a quadratic relationship between the CH⁴ uptake and NH^{3 p-}-N input (TF^NO3), soil pH, and C / N ratio in soil. A regression equation was obtained as follows to predict the CH⁴ uptake in forest soils: Cumulative CH⁴ uptake = 0.47 / Rain + 0.38 / TF^NH4 + 0.34 / TC - 0.30 / TF^N03 (R ^p2 = 0.74, p = 0.0001). This equation indicates that atmospheric N input into forest soils is one of the main factors that control cumulative CH⁴ uptake with precipitation, total carbon content in soil in Hokkaido, Japan.