Genome-wide in silico analysis of SOD genes in common bean (Phaseolus vulgaris L.)

Journal of Crop Science and Biotechnology - Superoxide dismutases (SODs) are a group of enzymes that play essential roles in catalyzing the dismutation of superoxide radicals to protect cells from...     

Effect of three diets on the gametogenic development and fatty acid profile of Paracentrotus lividus (Lamarck, 1816) gonads

In this study, the effects of three diets were investigated to enhance Paracentrotus lividus production for commercial purposes. P. lividus were fed ad libitum for 80 days with: diet A—fresh Codium tomentosum Stackhouse, 1797; diet B—formulated using a jellified mix of macroalgae and vegetables, including C. tomentosum (20%), Coralina sp. Linnaeus, 1758 (17%), cabbage Brassica oleracea var. capitata Linnaeus, 1753 (30%), carrot Daucus carota Linnaeus, 1753 (30%) and agar (3%) as a gelling agent. Diet C consisted of maize Zea mays Linnaeus, 1753 (56%) and New Zealand spinach Tetragonia tetragonoides (Pallas, 1781) Kuntze, 1891 (44%). Their effects on the gonadal and somatic growths, gonadosomatic index (GI) and gametogenesis were evaluated, as well as on the total lipid content and fatty acid composition of sea urchin's gonads. Diet A provided high values of eicosapentaenoic acid (EPA). Gonads of sea urchins fed with diet A were found mostly in growth and maturation stages of gametogenesis and showed the lowest lipid content. Sea urchins fed with diet B presented their gonads in the reabsorption stage and had the highest values of omega‐3 polyunsaturated fatty acids (PUFAs). Sea urchins fed with diet C were in the early stages of gametogenesis and had the highest values of lipid content, plus omega‐6 PUFAs. Once as an ingredient in a balanced mix with vegetables, C. tomentosum can be a key factor to the development of new promising high‐quality and low‐cost feed for P. lividus roe enhancement.     

Influence of light intensity on biofilm formation and the performance of pink shrimp Farfantepenaeus paulensis juveniles reared in cages

A reduction in light intensity may increase shrimp activity, although it may also negatively affect the development of photoautotrophic organisms present in biofilm, an important natural food source for shrimp. This experiment evaluated the influence of light intensity on biofilm development and on the growth of cultured Farfantepenaeus paulensis juveniles. Six cages were deployed in a shrimp culture pond and stocked with 60 juveniles (0.72 ± 0.03 g). Three cages were randomly chosen and covered with five layers of polyamide net to reduce light incidence (shaded treatment), while the other three cages were not covered (control treatment). Biofilm chlorophyll a and microorganism abundance, as well as shrimp growth, were monitored during the experiment. Chlorophyll a concentration and the abundance of bacteria and flagellates were significantly lower in the shaded treatment (P<0.05). After 75 rearing days, shrimp stocked in control treatment achieved significantly higher (5.98 g) (P<0.05) mean weight than shrimp reared in shaded treatment cages (5.13 g). Similarly, the biomass produced was also significantly higher (P<0.05) in the control treatment (322.92 g) than in the shaded treatment (287.31 g). The results of this study demonstrate that light intensity has a huge influence on shrimp performance mainly due to the increase in natural food availability.     

Effects of no‐take area size and age of marine protected areas on fisheries yields: a meta‐analytical approach

Marine protected areas (MPAs) are often promoted as tools for biodiversity conservation as well as for fisheries management. Despite increasing evidence of their usefulness, questions remain regarding the optimal design of MPAs, in particular concerning their function as fisheries management tools, for which empirical studies are still lacking. Using 28 data sets from seven MPAs in Southern Europe, we developed a meta‐analytical approach to investigate the effects of protection on adjacent fisheries and asking how these effects are influenced by MPA size and age. Southern European MPAs showed clear effects on the surrounding fisheries, on the ‘catch per unit effort’ (CPUE) of target species, but especially on the CPUE of the marketable catch. These effects depended on the time of protection and on the size of the no‐take area. CPUE of both target species and the marketable catch increased gradually by 2–4% per year over a long time period (at least 30 years). The influence of the size of the no‐take area appeared to be more complex. The catch rates of the entire fishery in and around the MPA were higher when the no‐take areas were smaller. Conversely, catch rates of selected fisheries that were expected to benefit most from protection increased when the no‐take area was larger. Our results emphasize the importance of MPA size on its export functions and suggest that an adequate, often extended, time frame be used for the management and the evaluation of effectiveness of MPAs.     

Effects of 17/0 circle hooks and bait on fish catches in a Southern Atlantic swordfish longline fishery

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Influence of gamete density,salinity and temperature on the normal embryonic development of the mangrove oyster Crassostrea rhizophorae Guilding, 1828

Laboratory experiments were undertaken to determine the optimal environmental conditions and some of the other factors concerned in the development of Crassostrea rhizophorae embryos.Critical variables such as the number of spermatozoa per ovocyte during fertilization, the time of fertilization after gamete liberation, egg density, temperature and salinity were related to the proportion of normal D-larvae of C. rhizophorae in the resulting broods.The highest proportion of normal D-larvae was obtained at concentrations of 500–5000 spermatozoa/ovocyte, under conditions of 25‰ salinity at 25 ± 1°C. The optimal density of eggs, for the production of normal D-larvae, was 10⁴?4 × 10⁴ ovocytes/l. If fertilization was delayed for more than 45 min after liberation of spermatozoa the proportion of normal D-larvae was greatly reduced. The experiments demonstrated that the temperature for developing embryos should be below 30°C. At 20 and 25°C there was a high proportion of normal D-larvae 24 h after fertilization. The ideal salinity for embryonic development in C. rhizophorae was 25–37‰. Below a salinity of 16‰, less than 2.5% of the D-larvae were normal.     

Climate‐induced vulnerability of fisheries in the Coral Triangle: Skipjack Tuna thermal spawning habitats

We investigated projected changes in sea surface temperature (SST) and the associated impacts on spawning habitat for skipjack tuna (Katsuwonus pelamis) in the Coral Triangle region (CT). A multimodel aggregate of SST CMIP5 models for the CT region, based on a comprehensive skill validation assessment, was used to identify the five best performing of 36 models tested for inclusion in a regional multimodel ensemble. Monthly 1° SST multimodel aggregate projections for the CT region under RCP8.5 show that increases in SST, as high as 2.8°C (mean value), will likely occur by the end of this century. Using these estimates of SST change, we applied three parameterizations of skipjack tuna spawning temperatures to assess the potential for change in spawning habitat within the CT region. The three spawning temperature parameterizations were as follows: (a) a square‐wave function derived from catch data with boundaries at 26 and 30°C; (b) a symmetric Gaussian function derived from the SEAPODYM models; and (c) an asymmetric Gaussian function that modifies the SEAPODYM curve in (b) to include the results of relevant physiological experiments. All three parameterizations show similar geographic patterns, with the amount of favourable spawning habitat decreasing throughout the central, equatorial CT region and increasing at higher latitudes. However, the three parameterizations show marked differences in the modelled magnitude of change, with an asymmetric Gaussian function (ASGF) showing a regionwide average of 66.1% decline in favourable spawning habitat between 2015 and 2099. These projected changes in tuna spawning habitats are likely to have important consequences on local and regional fisheries management in the CT region.     

Trawling for cephalopods off the Portuguese coast—Fleet dynamics and landings composition

Fleet dynamics was addressed for three cephalopod taxa of commercial interest, the squid Loligo vulgaris, the octopuses Octopus vulgaris and Eledone cirrhosa, and the cuttlefish Sepia officinalis, for 48 trawlers of the fish trawling fleet. Landing profiles (LP) were identified based on the species composition of the landings using hierarchical cluster analysis. Four out of a total of 12 different LP were related to cephalopods and other species associated with them.The effects on the landing proportions of a number of variables, year, season and vessel, are analysed for each of the species studied using generalized linear models (GLM). The factor “vessel”, including an ensemble of technical characteristics as well as the abilities of individual skippers, explained most of the model deviance, strongly reinforcing the existence of a fleet component dedicated to catch cephalopods. However, time also explains much of the variation found in the data.Seasonal alternation between landings of octopodidae and cuttlefish was observed within a small group of old trawlers operating mainly off the south coast, following the abundance cycles of these species. For a larger group of more modern trawlers, operating off the western coast, inter-annual shift between octopus and squid was found, together with a well marked seasonal pattern between the catches of cephalopods and horse mackerel.Spatial patterns of activity were identified using vessel monitoring system (VMS) data available for trawlers in Portugal, demonstrating the existence of cephalopod targeting strategies in Portuguese fish trawling activities.