Precision of genetic relationship estimates based on molecular markers

Genetic progress through selection is directly related to the amount of variability present in the population and the quality of genes contributed by the parents. Genetic relationships between lines were studied using DNA marker-based estimates of genetic similarity. A statistical methodology using the width of a confidence interval was developed to determine the number of probes to be surveyed and the precision in the estimation of genetic distance between pairs of cultivars. Precision was affected by type of genetic distance used, the number of cultivars, and amount of genetic diversity present in the studied group. The width of a (1-α)% confidence interval decreased as the number of RFLP fragments increased. Oat and wheat diversity studies were used to illustrate the methodology. This revised version was published online in July 2006 with corrections to the Cover Date.     

Suitability of Multi-Agent Simulations to study irrigated system viability: application to case studies in the Senegal River Valley

It is assumed that Agent-Based Modeling is a useful technique for water management issues. In particular, it may provide a suitable framework for representing irrigated systems. The objective of this paper is to demonstrate its potential for a specific use: research on irrigated systems’ viability in the Senegal River Valley. The main assumption to be verified is that Multi-Agent Systems constitute a suitable architecture to study theoretically irrigated systems’ viability using simulations. By using Multi-Agent Systems, virtual irrigated systems can be designed that might then be used as virtual laboratories. These virtual labs constitute an alternative when real labs cannot exist for some reason.

In this paper we report on experiments we have conducted using such virtual labs for exploring an Agent-Based Model through the simulation of scenarios. A scenario is defined as a triplet: an environment, a set of individual rules, a set of collective rules. It is evaluated according to the longevity of the irrigated system. An index is defined, based on the ratio of long-enduring simulations among a set of repetitions of a given scenario. Even if simulation results display significant diversity for a given scenario due to random factors in the processes simulated, the ratio of long-enduring simulations is repeatable. This entails to explore the overall behavior of the virtual irrigated system and to build theories concerning the viability of Senegalese irrigated systems. An example is given showing the need for strong coherence for a given environment among individual rules and collective rules.     

The development of Raparadish (x Brassicoraphanus, 2n=38), a new crop in agriculture

Summary Raparadish, x Brassicoraphanus, the amphidiploid hybrid between Brassica rapa (syn. B.campestris) and Raphanus sativus (fodder radish) was made by Dolstra (1982). Primary hybrid plants grew vigorously, suggesting that the amphidiploid AARR might be useful as a fodder crop. Three populations of this new material were studied, with special attention to improvement of fertility and resistance to beet cyst nematode (Heterodera schachtii), whilst preserving genetic variability. For lack of progress one of the populations was abandoned after the fourth generation. The other two populations were observed through nine or ten generations. Apart from the last two generations mass selection for seed set was carried out on the basis of single plants. This led to a considerable increase in average seed production, without losing a wide variation for this trait. Thus more progress is being expected. Five cycles of mass selection for resistance to beet cyst nematodes led to a considerable increase of the level of resistance of both populations. The prospects of this new agricultural crop are discussed.     

Inheritance of resistance to potato virus Y in garden pepper (Capsicum annuum L.)

Summary Bell pepper suffers considerable losses from a strain of potato virus Y (PVY^o-sbp). Crosses were attempted between two resistant lines Perennial and S41-1 and two highly susceptible bell pepper commercial cultivars California Wonder and Yolo Wonder. Studies of F₁'s, F₂'s, back crosses and F₃'s indicated that Perennial and S41-1 carry a recessive gene imparting resistance to potato virus Y.     

Response of Rapeseed (Brassica napus L.) Growth, Yield, Oil Content and Its Fatty Acids to Nitrogen Rates and Application Times

A steady and progressive increase in rapeseed yield was observed with each increment in applied nitrogen rates up to 213 kg/ha in both seasons. As for nitrogen application times, the analyzed data showed that adding a split dose (either 1/2 or 1/3) before the third irrigation was a common part between high yielding treatments in 1985/86 season. Nitrogen rates X application times interaction affected rapeseed yield significantly during the first winter season. The highest seed yield of 2.5 t/ha was obtained by adding 213 kg N/ha in two split doses at sowing and just before the third irrigation. The second yield value of 2.47 t/ha was produced under the same N rate when applied in two split doses before second and third irrigation. However, in the second season (1986/87), rapeseed plants did not exhibit significant responses to nitrogen rates X application times interaction.
Chemical analyses showed that rapeseed oil content and its fatty acids (Palmetic, Stearic, Oleic, Linoleic, Linolenic, Arachidic and Erucic) percentages were not significantly affected by either nitrogen rates or application times in both seasons. A very low content of Erucic acid (0.1–0.9 %) in all tested sample was noticed.     

Inheritance of Eye Pattern and Seed Coat Colour in Cowpea (Vigna unguiculata [L.] Walp.)

The F₂ progenies of crosses between several cowpea (V. unguiculata) lines were investigated for variation of eye pattern and seed coat colour. It was found that three (W, H, O) and five (R, P, B, M, N) major genes control eye pattern and seed coat colour, respectively. The recessive gene (GO) for restricted eye pattern enables the underlying basic white or cream seed coat colour to be observed. A similar effect is obtained with the recessive gene (rr) for colour expression. The expression of mottling (V), possibly a seed coat pattern, may for be observed when it is combined with the genes for certain eye patterns. The significance of these findings in breeding for consumer preference for specific seed coat colour is discussed.     

A SCAR marker linked to the ToMV resistance gene, Tm22, in tomato

A polymerase chain reaction (PCR)-based co-dominant marker was developed which is tightly linked to Tm2². This dominant locus confers resistance to ToMV in tomato. Random-amplified-polymorphic DNA (RAPD) screening was carried out with DNA from ToMV-susceptible and resistant tomato near-isogenic lines. A polymorphic band linked to ToMV resistance was observed. The polymorphic fragment was cloned and the DNA sequences of both ends determined. Specific PCR primers were designed from these sequences. PCR amplification with the specific primers resulted in an amplified band (SCAR) in both susceptible and resistant tomato lines. The amplified band from the susceptible lines could, however, be discerned from that of the resistant ones after cleavage with the restriction enzyme Hind III. In an F₂ population of 90, the polymorphic markers co-segregated with susceptibility or resistance, as determined by biological assays for ToMV resistance. The reported SCAR marker is linked to ToMV resistance not only in cultivars derived from American lineage, but also from European lineage. This method enables the distinction of homozygous and heterozygous individual plants in segregating populations, and provides a convenient and rapid assay for both selection and quality control during breeding programs and hybrid seed production, respectively. This revised version was published online in July 2006 with corrections to the Cover Date.     

Repeatability of different stability parameters for grain yield in chickpea

The presence of genotype × environment (GE) interactions in plant breeding experiments has led to the development of several stability parameters in the past few decades. The present study investigated the repeatability of these parameters for 16 chickpea (Cicer arietinum L.) genotypes by correlating their estimates obtained from extreme subsets of environments within a year and also over years. Based on the estimates of response and stability parameters within each trial, the ranking of genotypes in the low-yielding subset differed from that in the high-yielding subset. This indicates poor repeatability for response and stability parameters over the extreme environmental subsets. The estimates of mean yield and stability parameters represented by ecovalence, W²_i, were consistent over years, whereas those of response parameters (b_i, and S²_i) showed poor repeatability. Our results suggest that single-year results for yield and stability can be used effectively for selecting cultivars with stable grain yield if tested in a wider range of environments.