Effects of strains, strain crosses and environments on additive genetic and phenotypic variances in Drosophila melanogaster

SUMMARY: The stability of phenotypic, additive genetic and environmental variances of thorax length of Drosophila melanogaster in pure and synthetic strains was examined in two different environments. Two pure strains from different geographic locations (Melbourne and Townsville) were used, together with three synthetic populations formed from them. The existence of differences in thorax length between the Melbourne and Townsville populations, genotype by environment interaction, and heterosis in crosses between these populations indicate that they are genetically different. Thus geographic separation can cause differences in mean thorax length of flies from different populations. Both the difference in selection histories between the two localities and drift could lead to these differences. Up to the thirty fifth generation there was no evidence of any reduction in the difference between the Melbourne and Townsville populations, in either laboratory environment. The genetic differentiation of strains therefore may be maintained over many generations under new environmental conditions. The fluctuation over generations of heterosis of thorax length is possibly caused by the fluctuation of the rate of loss of favourable epistatic interaction in crossbred genotypes in combination with natural selection effects. V(p) was significantly higher in poor than in the good environment. This higher V(p) in the poor environment is most likly due to higher non additive genetic variance. V(p) was also significantly influenced by strain. In general, V(p) values of synthetic strains were higher than those of pure strains in both environments. Finally, the additive and environmental variances of thorax length were relatively stable across strains, generations and environments. ZUSAMMENFASSUNG: Wirkung von Herkünften, Kreuzungen und Umwelten auf additiv-genetische und ph?notypische Varianzen in Drosophila melanogaster Die Stabilit?t ph?notypischer, additiv-genetischer und umweltbedingter Varianzen der Thoraxl?nge von Drosophila melanogaster in reinen und synthetischen Herkünften wurde in zwei verschiedenen Umwelten überprüft. Zwei reine Herkünfte von verschiedenen Gegenden (Melboune und Townsville) wurden zusammen mit drei zwischen ihnen gebildeten synthetischen Populationen untersucht. Unterschiede in Thoraxl?nge zwischen Melbourne- und Townsvilleherkünften, Genotypumweltinteraktionen und Heterosis in Kreuzungen zwischen diesen Populationen zeigen, da? sie sich genetisch unterscheiden. Die geographische Trennung kann also Unterschiede in der mittleren Thoraxl?nge zur Folge haben, wobei unterschiedliche Selektionsgeschichte in beiden Gegenden und Drift dies verursachen k?nnen. Bis zur 35. Generation gab es in keinem Labormilieu einen Hinweis auf eine Reduktion der Unterschiede zwischen den beiden Populationen. Die genetische Differenz der Herkünfte erh?lt sich daher auch unter neuen Umweltverh?ltnissen über viele Generationen. Die Schwankung in Heterosis für Thoraxl?nge ist m?glicherweise durch Schwankungen in der Verlustrate günstiger epistatischer Interaktionswirkungen in Kreuzungsgenotypen zusammen mit natürlichen Selektionswirkungen verursacht. V(p) war durch Umweltbedingungen signifikant beeinflu?t und h?her in schlechtem als in gutem Milieu. Der hohe Wert in schlechtem Milieu ist wahrscheinlich auf nicht-additiv-genetische Varianz zurückzuführen. V(p) wurde auch signifikant durch Herkunft beeinflu?t und Werte in synthetischen Linien waren h?her Linien in beiden Milieus. Additive und umweltbedingte Varianzen waren über Linie, Generationen und Umwelt relativ stabil.     

Effect of magnesium on crop yields within maize–green manure–T. aman rice cropping pattern on acid soil

An experiment was conducted to study the response of maize to magnesium (Mg) and to find out the residual effect of Mg and green manure (GM) on transplanted aman (T. aman) rice in the maize–GM–T. aman cropping pattern. There were six treatments: T₁ (recommended dose of fertilizer (RDF) + 0 kg Mg + 2 t CaCO₃ ha^?1), T₂ (RDF + 10 kg Mg + 2 t CaCO₃ ha^?1), T₃ (RDF + 20 kg Mg +2 t CaCO₃ ha^?1), T₄ (RDF + 30 kg Mg + 2 t CaCO₃ ha^?1), T₅ (RDF) and T₆ (2 t CaCO₃ ha^?1). The response of maize to Mg was quadratic and the optimum dose of Mg was found to be 19 kg ha^?1, which resulted in maximum yield of 10,507 kg ha^?1. The residual effect of Mg along with GM and reduced dose of chemical fertilizer resulted in significant increase of grain yield of rice. Thus, N₂₅₀P₆₀K₁₀₀Mg₁₉S₄₀Zn₅B₂ kg ha^?1 for maize, only 20 kg N ha^?1 for GM (Sesbania) and N₆₀P₉K₃₃S₁₀Zn₁B₁ kg ha^?1 for T. aman appeared as the best combination for maximizing the productivity and may be recommended for this pattern at non-calcareous light-textured soils of Bangladesh. Application of lime increased soil pH, and this together with fertilizer and GM tended to improve soil fertility and thus may be recommended for soil amelioration.     

Green nano-emulsion intervention for water-soluble glyphosate isopropylamine (IPA) formulations in controlling Eleusine indica (E. indica)

This article describes the development of environmentally friendly nano-emulsion system for water-soluble herbicide application. Pseudoternary phase diagrams were established in the emulsion system of fatty acid methyl esters (FAMEs)/alkylpolyglucosides (APG) and/or 3-(3-hydroxypropyl)-heptamethyltrisiloxane (organosilicone)/water encompassed with 41% (w/w) glyphosate isopropylamine (IPA) as herbicide active. Pre-formulations were selected from isotropic (L) region in the phase diagrams and their emulsion system characteristics were determined. The microemulsion systems were chosen and then dispersed into water using low-energy stirring method (200 rpm for 5 min). Oil-in-water (O/W) nano-emulsions were formed with particle sizes of diameter less than 200 nm. The nano-emulsion systems showed significantly lower surface tension than a commercial formulation (Roundup®). In the biological application study, treatments of nano-emulsion formulations and Roundup® were applied on narrow-leaved weed Eleusine indica. Multiple doses of glyphosate IPA of the treatments were applied for the construction of dose-response curves for determination of effective dose (ED₅₀). The nano-emulsion formulation showed lower ED₅₀ was 0.40 kg a.e./ha in controlling the weed than Roundup® was 0.48 kg a.e./ha. This finding suggested that the possibility of using nano-emulsion system to increase penetration and uptake of glyphosate IPA.     

Mycelium of arbuscular mycorrhizal fungi increases soil water repellency and is sufficient to maintain water-stable soil aggregates

Using an in vitro bioreactor system in which the arbuscular mycorrhizal (AM) fungus Glomus intraradices was grown in a soil devoid of detectable living microbes, we could show that the mycelium of this fungus contributed to the maintenance of water-stable soil aggregates and increased soil water repellency, as measured by water drop penetration time. This is to our knowledge the first demonstration of a causal link between AM fungal growth and water repellency of soil aggregates. Our results also place AM fungal contributions to soil aggregation on a firm mechanistic footing by showing that hyphae are sufficient to produce effects, in the absence of other soil biota, which have always been included in previous studies.     

Effect of nitrogen fertilizer levels and irrigation on quality characteristics in bread wheat (Triticum aestivum L.)

In order to evaluate irrigation regimes and nitrogen fertilization on quality characteristics of wheat cultivars, a field experiment was carried out using split-plot factorial design based on randomized complete block design with three replications in Quchan, Iran (2010–2012). Main plots were assigned with four irrigation regimes; I1, 90 mm; I2, 130 mm; I3, 170 mm based on evaporation from a class A pan; and I4, water deficit stress during post-anthesis stage; sub-plots were assigned with four levels of nitrogen (N1, 0; N2, 70; N3, 140; and N4, 210 kg ha^?1); and three wheat cultivars (V1, Mihan; V2, C-87-6; and V3, C-87-11) were used as factorial. The results showed that nitrogen fertilization increased some quality characteristics. Under water deficit (I4), gluten index, grain protein content, grain yield, and sedimentation volume decreased. Significant interactions between irrigation regimes and both nitrogen levels and cultivars were observed.     

Efficiency of Coated Urea on Nutrient Uptake and Maize Production

A field experiment was conducted to study the effects of coated urea with urease inhibitor [copper (Cu) and zinc (Zn)], nitrification inhibitor (DMPP), biochar and geopolymer on ammonium, nitrate, Cu, Zn content and crop yield of maize. The treatments were composed of urea alone (control), urea coated Cu and Zn (UCuZn), urea coated with Cu, Zn, and DMPP (UCuZnDMPP), urea impregnated with biochar (Ubio) and urea coated with geopolymer (Ug2). Data showed that treatments with Cu, Zn, and DMPP produced lower ammonium (NH₄) and nitrate (NO₃) in UCuZn and UCuZnDMPP while they had the highest concentration of Cu and Zn in soil and plant tissues. Plots treated with UCuZn and UCuZnDMPP produced maximum N concentrations in grains and yield, with increases by 79.5% and 74.1%, respectively, as compared with urea (control). This finding demonstrates that by slow down the hydrolysis and nitrification process using urease and nitrification inhibitor were beneficial to increased N uptake, ultimately produced higher yield.     

Genotypic, phenotypic, biochemical, physiological and pathogenicity-based categorisation of Acanthamoeba strains

The genus Acanthamoeba includes more than 20 morphological species, but classification is problematical. Recently, the discovery of substantial interstrain differences in ribosomal DNA (rDNA) sequences has prompted questions about the relatedness of strains of the same species. In this study, therefore, we have investigated relationships between two isolates of A. polyphaga, CCAP 1501/3c and ATCC 30871, using morphological, biochemical, physiological, molecular and cytotoxicity assays. We observed that A. polyphaga ATCC 30871 exhibited up to six arms in endocyst while A. polyphaga CCAP 1501/3c exhibited a maximum of 5 arms thus indicating their position in group 2 and 3, respectively. Acanthamoeba polyphaga ATCC 30871 exhibited growth at 37 degrees C and growth on 1M mannitol plates while A. polyphaga CCAP 1501/3c did not. In addition, both isolates exhibited differences in isoenzyme banding patterns and rDNA restriction fragment polymorphisms. More importantly, A. polyphaga ATCC 30871 produced cytotoxicity on corneal epithelial cells while A. polyphaga CCAP 1501/3c had no effects, suggesting differences in pathogenicity. Thus, all the results provide evidence for significant differences between the strains and further provided the basis for reclassification of the isolates. Implications of these results in the clinical diagnosis of pathogenic Acanthamoeba are discussed.     

Changes in chemical and selected biochemical components,protein quality,and digestibility of mung bean (Vigna radiata) during gemination and cooking

The effect of germination on the nutritive value of mung beans (Vigna radiata) was studied in raw and cooked samples after 0, 2 and 4 days of germination. Water content increased, but crude protein, lipids, crude fiber, ash and carbohydrates decreased with germination. Trypsin inhibitor activity did not change significantly while hemagglutinins were absent. Essential amino acids (methionine, tyrptophan and lysine) decreased with germination.Net protein ratio (NPR) and protein efficiency ratio (PER) in rats decreased with germination especially in cooked sprouts. True digestibility did not change consistently due to germination or cooking. In conclusion, loss of protein quality in mung beans occurs upon germination and cooking.Publication INCAP/UNU-4.     

Rigidoporus microporus and the white root rot disease of rubber

Rigidoporus microporus is an economically important plant pathogenic fungus causing particularly severe losses to the rubber industry worldwide. The pathogen is responsible for white root rot (WRR) disease, infecting the host roots via white fibrous mycelia, causing vascular disfunction, and visible symptoms including leaf discolouration and dieback in severely infected trees. The final stage of the disease is characterized by the appearance of basidiocarps at the tree collar. The development of WRR in rubber plantations is dependent on fungal diversity in the soil, pH, temperature, and cation levels. Several ‘-omics’ approaches have been undertaken to understand how R. microporus functions with the objective, ultimately, to control WRR. Unfortunately, no resistant rubber clone has been identified to date. The disease is managed through physical and chemical methods that are laborious and negatively impact the environment, respectively. Recent developments in research on R. microporus shed light on potential sustainable routes to WRR disease control using beneficial microorganisms and natural compounds. This review discusses the characteristics of R. microporus isolates from different geographical origins, the pathogenicity and virulence mechanisms of the necrotrophic fungal pathogen, factors that influence the development of WRR, recent findings from the multi-omics studies, and control methods that are available to combat this economically important pathogen.