A soil-diagnostic key to manage saline and waterlogged catchments in the Mt Lofty Ranges, South Australia

Abstract. Dryland salinity in the Mt Lofty Ranges, South Australia has developed as a result of native vegetation being replaced with pastures that use less water. Groundwaters have risen and mobilized ions (sodium, chloride, sulphate and iron) stored within deeply weathered micaceous sandstones and schists. Salinity resulting from sodium chloride is common in agricultural catchments around Australia, but saline sulphidic soils (with sulphate and iron) have only been studied in South Australia. Salinity is also associated with waterlogging and secondary sodicity. The amelioration of dryland salinity and waterlogging involves management of whole catchments, not just the area that is currently saline. It is imperative that all processes operating in saline catchments and their interactions are clearly understood.
Salinity, waterlogging, sodicity, sulphidization and water erosion were studied in four saline sub-catchments in the Mt Lofty Ranges. Grey (bleached) and yellow mottles (iron depletions) or black and red stains (iron concentrations) develop under certain conditions of water saturation, salinization, sulphidization, sodification and water erosion in surface and subsurface horizons. The amounts of these diagnostic features were used to develop a farm planning key for managing saline catchments in the Mt Lofty Ranges. Using soil diagnostic features, soil-water processes in saline catchments are easily identified by farmers and land managers. Management options (e.g. fencing, tree planting and drainage) are then targeted to specific soils and can be easily incorporated by agricultural advisers into farm management plans. We recommend that soil diagnostic features which help predict the onset of land degradation be used in the production of land capability maps for farm planning purposes.     

Convergence of Campylobacter species: implications for bacterial evolution

The nature of species boundaries in bacteria remains controversial. In particular, the mechanisms of bacterial speciation and maintenance in the face of frequent genetic exchange are poorly understood. Here, we report patterns of genetic exchange that show two closely related zoonotic pathogenic species, Campylobacter jejuni and Campylobacter coli, are converging as a consequence of recent changes in gene flow. Population expansion into a novel ecological niche generated by human activity is the most probable explanation for the increase in genetic exchange between these species. Bacterial speciation can therefore occur by mechanisms analogous to those seen in metazoans, where genetic diversification and incipient speciation caused by ecological factors have been reported in several genera.     

Human-specific gain of function in a developmental enhancer

Changes in gene regulation are thought to have contributed to the evolution of human development. However, in vivo evidence for uniquely human developmental regulatory function has remained elusive. In transgenic mice, a conserved noncoding sequence (HACNS1) that evolved extremely rapidly in humans acted as an enhancer of gene expression that has gained a strong limb expression domain relative to the orthologous elements from chimpanzee and rhesus macaque. This gain of function was consistent across two developmental stages in the mouse and included the presumptive anterior wrist and proximal thumb. In vivo analyses with synthetic enhancers, in which human-specific substitutions were introduced into the chimpanzee enhancer sequence or reverted in the human enhancer to the ancestral state, indicated that 13 substitutions clustered in an 81-base pair module otherwise highly constrained among terrestrial vertebrates were sufficient to confer the human-specific limb expression domain.     

Phosphorylation of ULK1 (hATG1) by AMP-activated protein kinase connects energy sensing to mitophagy

Adenosine monophosphate-activated protein kinase (AMPK) is a conserved sensor of intracellular energy activated in response to low nutrient availability and environmental stress. In a screen for conserved substrates of AMPK, we identified ULK1 and ULK2, mammalian orthologs of the yeast protein kinase Atg1, which is required for autophagy. Genetic analysis of AMPK or ULK1 in mammalian liver and Caenorhabditis elegans revealed a requirement for these kinases in autophagy. In mammals, loss of AMPK or ULK1 resulted in aberrant accumulation of the autophagy adaptor p62 and defective mitophagy. Reconstitution of ULK1-deficient cells with a mutant ULK1 that cannot be phosphorylated by AMPK revealed that such phosphorylation is required for mitochondrial homeostasis and cell survival during starvation. These findings uncover a conserved biochemical mechanism coupling nutrient status with autophagy and cell survival.     

Melt inclusions in veins: linking magmas and porphyry Cu deposits

At a porphyry copper-gold deposit in Bajo de la Alumbrera, Argentina, silicate-melt inclusions coexist with hypersaline liquid- and vapor-rich inclusions in the earliest magmatic-hydrothermal quartz veins. Copper concentrations of the hypersaline liquid and vapor inclusions reached maxima of 10.0 weight % (wt %) and 4.5 wt %, respectively. These unusually copper-rich inclusions are considered to be the most primitive ore fluid found thus far. Their preservation with coexisting melt allows for the direct quantification of important oreforming processes, including determination of bulk partition coefficients of metals from magma into ore-forming magmatic volatile phases.