The high prevalence of hepatitis E virus infection in wild boars in Ibaraki Prefecture,Japan

Hepatitis E virus (HEV) is known as a causative agent of zoonosis and food poisoning. Pigs and some species of wild animals, including wild boar, are known to be a reservoir of HEV. In this study, we investigated the situation regarding HEV infection in wild boars in Ibaraki Prefecture, Japan. Serum, liver and feces samples from 68 animals were collected, and the presence or absence of HEV genomic RNA and HEV antibodies were analyzed. The viral genome was detected in samples from 7 (10.3%) animals, with all HEVs classified as genotype 3, subtype 3b. HEV antibodies were detected in samples from 28 (41%) animals. This report demonstrates for the first time the high prevalence of HEV infection in wild boars in Ibaraki Prefecture.     

Postharvest anthracnose on Satsuma mandarin orange caused by <Emphasis Type="Italic">Colletotrichum fioriniae</Emphasis>

In early January 2015–2017, anthracnose was detected on Satsuma mandarin orange (SMO) (Citrus unshiu) fruits kept in farmers’ storage rooms in Saga Prefecture, Japan. Three single-spore isolates from rotten fruits reproduced the postharvest anthracnose symptoms in wound-inoculated SMO fruits and were re-isolated from lesions. The isolates were identified as Colletotrichum fioriniae based on conidial morphology, culture characteristics, rDNA-ITS, and beta-tubulin-2 gene sequences. This is the first report of postharvest anthracnose on SMO caused by C. fioriniae.     

High-resolution linkage mapping of the rat hooded locus

To identify a gene responsible for the hooded phenotype in the rat, high-resolution linkage mapping for the hooded locus was performed using IS (non-hooded) and LEA (hooded) rats. The map revealed that only Kit gene existed in the critical region, suggesting that the Kit is a strong candidate gene. However, mutation was not found in the coding region of the LEA rat Kit gene. Further, the expressions of Kit mRNA were not different in fetal neural tubes and both neonatal and adult skins between IS and LEA rats. Furthermore, Kit-positive cells, possibly melanocytes, were found in the non-pigmented hair follicles of hooded phenotype rats. Several hypotheses are conceivable to account for mechanisms in the appearance of hooded phenotype.     

An alternative menaquinone biosynthetic pathway operating in microorganisms

In microorganisms, menaquinone is an obligatory component of the electron-transfer pathway. It is derived from chorismate by seven enzymes in Escherichia coli. However, a bioinformatic analysis of whole genome sequences has suggested that some microorganisms, including pathogenic species such as Helicobacter pylori and Campylobacter jejuni, do not have orthologs of the men genes, even though they synthesize menaquinone. We deduced the outline of this alternative pathway in a nonpathogenic strain of Streptomyces by bioinformatic screening, gene knockouts, shotgun cloning with isolated mutants, and in vitro studies with recombinant enzymes. As humans and commensal intestinal bacteria, including lactobacilli, lack this pathway, it represents an attractive target for the development of chemotherapeutics.     

Influence of using texture information in remote sensed data on the accuracy of forest type classification at different levels of spatial resolution

We evaluated the influence of texture information from remote sensed data on the accuracy of forest type classification at different spatial resolutions. We used 4-m spatial resolution imagery to create five different sets of imagery with lower spatial resolutions down to 30 m. We classified forest type using spectral information alone, texture information alone, and spectral and texture information combined at each spatial resolution, and compared the classification accuracy at each resolution. The classification and regression tree method was used for classification. The accuracy of all three tests decreased slightly with lower spatial resolution. The accuracy with the combined data was generally higher than with either the spectral or texture information alone. At most resolutions, the lowest accuracy was with texture information alone. However, there was no clear difference in accuracy between the combined data and spectral data alone at 25- and 30-m spatial resolution. These results indicate that adding texture information to spatial information improves the accuracy of forest type classification from very high resolution (4-m spatial resolution) to medium resolution imagery (20-m spatial resolution), but this accuracy improvement does not appear to hold for relatively coarse resolution imagery (25- to 30-m spatial resolution).     

Estimation of stand volumes using the <Emphasis Type="Italic">k</Emphasis>-nearest neighbors method in Kyushu,Japan

The k-nearest neighbors (kNN) method is widely employed in national forest inventory applications using remote sensing data. The objective of this study was to evaluate the kNN method for stand volume estimation by combining LANDSAT/ETM+ data with 622 field sample plots from the Japanese National Forest Inventory (NFI) in Kyushu, Japan. The root mean square error (RMSE) and relative RMSE of the volume estimates rapidly decreased as the number of nearest neighbors (k) increased up to five, and then it slightly declined. They were consistently smaller for the Euclidean distance than for the Mahalanobis distance. The estimation errors (RMSE and relative RMSE) were 169.2 m³/ha and 66.2%, respectively (k = 10). The relative RMSE was similar to the previous studies. The estimated values were more accurate towards the mean value of the total volume, with an overestimation of the low volumes and an underestimation of the high volumes. We found a significant linear relationship between the observed stand volumes and estimated errors, which suggests that systematic errors may be reduced using this linearity. This research concluded that the kNN method is suitable for estimating stand volumes in Kyushu.     

Effect of settings of digital fisheye photography to estimate relative illuminance within forest under low light conditions

In order to evaluate the effects of settings of digital fisheye photography on estimates of relative illuminance (RI) within a forest under low light conditions, we assessed the effectiveness of some estimators, i.e., canopy openness (CO), sky factor (SF), and diffuse transmittance (DIF). The estimates were calculated from digital hemispherical photographs taken with two different exposure settings, i.e., the reference exposure setting and the auto-exposure setting. We also presented a new estimator (%Exposure), which does not require image analysis, and compared it with other estimators calculated from a digital hemispherical photograph using image analysis. The CO, SF, and DIF calculated from digital hemispherical photographs taken with auto-exposure setting were not significantly correlated with RI. However, those calculated from digital hemispherical photographs taken with reference exposure settings were significantly correlated with RI. On the other hand, %Exposure showed a slightly higher correlation with RI compared with the other estimators.     

Calibrating view angle and lens distortion of the Nikon fish-eye converter FC-E8

Recently, an inexpensive digital camera that can equip with a fish-eye converter lens, FC-E8, has been available from Nikon. The converter has more than 180° view angle and lens distortion. The objectives of the present study were to develop a procedure for calibrating the view angle and lens distortion of the fish-eye converter, and to examine the effect of the calibration on light environment estimates. Based on unpublished data provided by the Electric Image Technical Center of Nikon, a 12-order poly-nomial expression for the calibration was derived. The expression enabled us to calibrate the view angle and lens distortion for all selectable resolution digital images. Using a Nikon Coolpix 990 digital camera with the fish-eye converter, 105 hemispherical photographs were taken in 15 stands, and then the canopy cover and weighted openness were measured as the light environment estimates. The calibrated estimates were significantly higher than uncalibrated ones, but the differences were comparatively small, with the average differences being 0.658% for canopy cover and 0.344% for weighted openness. A strongly positive correlation between calibrated and uncalibrated estimates was observed. Both slope and intercept of the regression lines of the calibrated estimate against the uncalibrated one were significantly different between canopy cover and weighted openness, suggesting that the calibration effect would be different among light environment estimates. In conclusion, we should pay attention to the view angle and lens distortion of the fish-eye converter in estimating light environments using the Coolpix digital camera.     

Rapid and convenient method for preparing aurapten-enriched product from hassaku peel oil: implications for cancer-preventive food additives

Aurapten (7-geranyloxycoumarin) has been reported to be an effective inhibitor of chemical carcinogenesis in some rodent models. In the present study, a method for preparing an aurapten-enriched agricultural product has been established. Out of 17 Rutaceae varieties, the aurapten content in hassaku (Citrus hassaku Hort ex Y. Tanaka) fruit peel was marked, as well as that in natsumikan (C. natsudaidai) and grapefruit (C. paradisi). The aurapten content in hassaku peel was most abundant in April. Hassaku fruit peel oil, which was dissolved by heating precipitates including aurapten which had formed after freezing the peel oil at -20 degrees C, was used. After adsorbing aurapten from peel oil onto synthetic adsorbent SP70, the adsorbent was washed with 40% (v/v) ethanol in water to remove essential oils and pigments remaining on the adsorbent. Aurapten was then eluted with 80% (v/v) ethanol. In a laboratory-scale test, the recovery rates of aurapten and total carotenoids from the eluates were 74.3 and 4.6%, respectively. In a pilot-scale test, the recovery rate of aurapten in the aurapten-enriched preparation from dissolved hassaku oil was 91.0%, and its concentration was 64.1% (w/w). When stored for 180 days under sunlight, aurapten in powder form remained at 88.0-89.0% of the initial level, but only 31.3-43.8% in ethanol. The stability of aurapten in the aurapten-enriched preparation was higher than that of purified aurapten. These results suggest that aurapten is readily recovered from hassaku peel oil using SP70, and thus may be used as a food additive.