Classification and class-modeling of "Riviera Ligure" extra-virgin olive oil using chemical-physical parameters

The Protected Designation of Origin (PDO) "Riviera Ligure" for extra-virgin olive oils from Liguria specifies three additional geographical mentions corresponding to three different geographical areas. To obtain a complete characterization of this typical Italian product, 217 samples of olive oils produced in this North Italian region during 1998/99 and 1999/2000 were analyzed. For each sample 31 variables were determined by chemical-physical analyses, and the data were subjected to a multivariate statistical analysis. For the 1998/99 crop, characterized by favorable climatic conditions, class-models of the three geographical areas were obtained with good predictive ability, also considering the influence of the month of olive harvesting. The oil samples from the 1999/2000 crop were similarly studied, but bad climatic conditions and a widespread Dacus oleae infestation leveled out the peculiar features of the oils produced in the three areas.     

Quantitation of Bt-176 maize genomic sequences by surface plasmon resonance-based biospecific interaction analysis of multiplex polymerase chain reaction (PCR)

Surface plasmon resonance (SPR) based biosensors have been described for the identification of genetically modified organisms (GMO) by biospecific interaction analysis (BIA). This paper describes the design and testing of an SPR-based BIA protocol for quantitative determinations of GMOs. Biotinylated multiplex Polymerase Chain Reaction (PCR) products from nontransgenic maize as well as maize powders containing 0.5 and 2% genetically modified Bt-176 sequences were immobilized on different flow cells of a sensor chip. After immobilization, different oligonucleotide probes recognizing maize zein and Bt-176 sequences were injected. The results obtained were compared with Southern blot analysis and with quantitative real-time PCR assays. It was demonstrated that sequential injections of Bt-176 and zein probes to sensor chip flow cells containing multiplex PCR products allow discrimination between PCR performed using maize genomic DNA containing 0.5% Bt-176 sequences and that performed using maize genomic DNA containing 2% Bt-176 sequences. The efficiency of SPR-based BIA in discriminating material containing different amounts of Bt-176 maize is comparable to real-time quantitative PCR and much more reliable than Southern blotting, which in the past has been used for semiquantitative purposes. Furthermore, the approach allows the BIA assay to be repeated several times on the same multiplex PCR product immobilized on the sensor chip, after washing and regeneration of the flow cell. Finally, it is emphasized that the presented strategy to quantify GMOs could be proposed for all of the SPR-based, commercially available biosensors. Some of these optical SPR-based biosensors use, instead of flow-based sensor chips, stirred microcuvettes, reducing the costs of the experimentation.     

A comparative study on the interference of two herbicides in wheat and italian ryegrass and on their antioxidant activities and detoxification rates

A study was carried out to compare the effects of treating wheat (Triticum aestivum) and Italian ryegrass (Lolium multiflorum) with atrazine and fluorodifen. The herbicides interfered with photosynthesis and dark respiration, depending on the species. Atrazine decreased photosynthesis in both species and dark respiration in wheat, while fluorodifen caused decrements of photosynthetic activity of wheat. Antioxidant enzymes, such as ascorbate peroxidase (APX), dehydroascorbate reductase (DHAR), and glutathione reductase (GR), were generally more active in untreated and treated wheat with respect to Italian ryegrass, which explains why oxidative damage, expressed as malondialdehyde (MDA) content, was only found in ryegrass. Investigations on the activity of herbicide-detoxifying enzyme, glutathione S-transferase (GST), and on the accumulation and persistence of the herbicides in the plants showed higher detoxification rates in wheat than in the grass.     

Erratum to: Spatial and Temporal Heavy Metal Concentration (Cu,Pb, Zn,Hg, Fe,Mn, Ni) in Sediments of the Mar Piccolo in Taranto (Ionian Sea,Italy)

Water, Air, &; Soil Pollution -     

Trophic structure of a pond community dominated by an invasive alien species: Insights from stomach content and stable isotope analyses

1. Invaders affect native species across multiple trophic levels, influencing the structure and stability of freshwater communities. Based on the ‘trophic position hypothesis’, invaders at the top of the food web are more harmful to native species via direct and indirect effects than trophically analogous native predators are.
2. However, introduced and native predators can coexist, especially when non-native species have no ecological and behavioural similarities with natives, occupy an empty niche, or natives show generalist anti-predator strategies that are effective at the community level.
3. At present, conservation efforts are focused on eradicating invaders; however, their removal may lead to unwanted and unexpected outcomes, especially when invaders are well established and strongly interspersed with natives. This highlights the need to consider invaders in a whole-ecosystem context and to consider the evolutionary history and behavioural ecology of natives and invaders before active management is applied.
4. Here, stomach content and stable isotope analyses were combined to investigate a pond system dominated by invaders in order to understand the effects of the interactions among upper level predators and lower level members of the food web on the whole community structure.
5. Both diet and isotope analyses showed that several invaders contributed to the diet of natives and invaders. A significant isotope overlap was found among upper level predators. However, stomach content analysis suggested that predators reduced the potential competition differentiating the food spectrum by including additional prey in their diet. Both native and non-native upper level predators, by preying on invaders, seem not to exert a strong suppressive effect through predation and competition on native species.
6. This research confirms the importance of studying food webs to identify ecological conditions that forecast the potential for deleterious impacts before management is applied. In cases where invaders cannot be eradicated, management efforts should follow a conciliatory approach promoting the coexistence of native species with invaders.

     

Nanopore sequencing for the detection and identification of Xylella fastidiosa subspecies and sequence types from naturally infected plant material

Xylella fastidiosa (Xf) is a gram-negative bacterial plant pathogen that can infect over 500 plant species. While it is endemic in America, X. fastidiosa subsp. pauca was reported for the first time in Europe in 2013 on olive trees in southern Italy. The availability of fast, sensitive, and reliable diagnostic tools is indispensable for managing current and future outbreaks of Xf. In this paper, we use the OXford Nanopore Technologies (ONT) MinION platform for detecting and identifying Xf at species, subspecies, and sequence type (ST) level. Two workflows were developed: the first one provided a “shotgun” strategy, that is, exploring the possibility of detecting Xf within DNA extracted from plant samples. This allowed detection of Xf by direct DNA sequencing and identifying the subspecies only in samples with high bacterial levels. Nanopore amplicon sequencing was pursued as a second workflow. This consists of PCR amplification of a set of seven multilocus sequence typing (MLST) fragments, officially adopted for identifying Xf at type strain level, followed by Nanopore-sequencing of the amplicons and an ad hoc pipeline to generate MLST consensus calls. This combined approach, which takes only a few hours, allowed the detection and identification of Xf at ST level in plant material with low bacterial infection.     

Effect of pretilachlor and fenclorim on carbohydrate and protein formation in relation to their persistence in rice

The persistence of pretilachlor applied to rice singly or in combination with the safener fenclorim was investigated in connection with starch, glucose and protein formation. The addition of fenclorim to pretilachlor did not reduce the accumulation of the latter, but reduced its persistence in rice shoots, while the presence of pretilachlor did not affect the persistence of fenclorim, but significantly increased its accumulation in the shoots. Therefore the safening effect of fenclorim consisted of a more rapid detoxification of pretilachlor. Over the period of pretilachlor and fenclorim detoxification, decreases in starch content, partially counterbalanced by increases of free glucose, and decreases in total protein content were observed in pretilachlor-treated shoots; decreases in both starch and free glucose, as well as in total protein content, were observed in fenclorim -treated shoots compared with the untreated controls. The decreases in starch and total glucose appeared to be a direct consequence of reduced glucokinase and ribulose-1,5-bisphosphate carboxylase activity, and the decrease in total protein an indirect consequence of reduced glutamine synthetase and glutamate synthase activity, in response to pretilachlor and fenclorim treatments.     

Effects of different cooking methods on nutritional and physicochemical characteristics of selected vegetables

The objective of the present study was to evaluate the effect of three common cooking practices (i.e., boiling, steaming, and frying) on phytochemical contents (i.e., polyphenols, carotenoids, glucosinolates, and ascorbic acid), total antioxidant capacities (TAC), as measured by three different analytical assays [Trolox equivalent antioxidant capacity (TEAC), total radical-trapping antioxidant parameter (TRAP), ferric reducing antioxidant power (FRAP)] and physicochemical parameters of three vegetables (carrots, courgettes, and broccoli). Water-cooking treatments better preserved the antioxidant compounds, particularly carotenoids, in all vegetables analyzed and ascorbic acid in carrots and courgettes. Steamed vegetables maintained a better texture quality than boiled ones, whereas boiled vegetables showed limited discoloration. Fried vegetables showed the lowest degree of softening, even though antioxidant compounds were less retained. An overall increase of TEAC, FRAP, and TRAP values was observed in all cooked vegetables, probably because of matrix softening and increased extractability of compounds, which could be partially converted into more antioxidant chemical species. Our findings defy the notion that processed vegetables offer lower nutritional quality and also suggest that for each vegetable a cooking method would be preferred to preserve the nutritional and physicochemical qualities.     

Studies on proofing of yeasted bread dough using near- and mid-infrared spectroscopy

Dough proofing is the resting period after mixing during which fermentation commences. Optimum dough proofing is important for production of high quality bread. Near- and mid-infrared spectroscopies have been used with some success to investigate macromolecular changes during dough mixing. In this work, both techniques were applied to a preliminary study of flour doughs during proofing. Spectra were collected contemporaneously by NIR (750-1100 nm) and MIR (4000-600 cm(-1)) instruments using a fiberoptic surface interactance probe and horizontal ATR cell, respectively. Studies were performed on flours of differing baking quality; these included strong baker's flour, retail flour, and gluten-free flour. Following principal component analysis, changes in the recorded spectral signals could be followed over time. It is apparent from the results that both vibrational spectroscopic techniques can identify changes in flour doughs during proofing and that it is possible to suggest which macromolecular species are involved.