Optimisation of Key Abiotic Factors of PAH (Naphthalene, Phenanthrene and Anthracene) Biodegradation Process by a Bacterial Consortium

The aim of this work was to determine the optimum values for the biodegradation process of six abiotic factors considered very influential in this process. The optimisation of a polycyclic aromatic hydrocarbon (naphthalene, phenanthrene and anthracene) biodegradation process was carried out with a degrading bacterial consortium C2PL05. The optimised factors were the molar ratio of carbon/nitrogen/phosphorus (C/N/P), the nitrogen source, the iron source, the iron concentration, the pH and the carbon source. Each factor was optimised applying three different treatments during 168 h, analysing cell density by spectrophotometric absorbance at 600 nm and PAH depletion by HPLC. To determine the optimum values of the factors, an analysis of variance was performed using the cell density increments and biotic degradation constants, calculated for each treatment. The most effective values of each factor were: a C/N/P molar ratio of 100:21:16, NaNO₃ as nitrogen source, Fe₂(SO₄)₃ as iron source using a concentration of 0.1 mmol l^?1, a pH of 7.0 and a mixture of glucose and PAHs as carbon source. Therefore, high concentrations of nutrients and soluble forms of nitrogen and iron at neutral pH favour the biodegradation. Also, the addition of glucose to PAHs as carbon source increased the number of total microorganism and enhanced PAH biodegradation due to the augmentation of PAH degrader microorganisms. It is also important to underline that the statistical treatment of data and the combined study of the increments of the cell density and the biotic biodegradation constant have facilitated the accurate interpretation of the optimisation results. For an optimum bioremediation process, it is very important to perform these previous bioassays to decrease the process development time and, therefore, the costs.     

Additive and interactive effects of functionally dissimilar soil organisms on a grassland plant community

The productivity and diversity of plant communities are affected by soil organisms such as arbuscular mycorrhizal fungi (AMF), root herbivores and decomposers. However, it is unknown how interactions between such functionally dissimilar soil organisms affect plant communities and whether the combined effects are additive or interactive. In a greenhouse experiment we investigated the individual and combined effects of AMF (five Glomus species), root herbivores (wireworms and nematodes) and decomposers (collembolans and enchytraeids) on the productivity and nutrient content of a model grassland plant community as well as on soil microbial biomass and community structure. The effects of the soil organisms on productivity (total plant biomass), total root biomass, grass and forb biomass, and nutrient uptake of the plant community were additive. AMF decreased, decomposers increased and root herbivores had no effect on productivity, but in combination the additive effects canceled each other out. AMF reduced total root biomass by 18%, but decomposers increased it by 25%, leading to no net effect on total root biomass in the combined treatments. Total shoot biomass was reduced by 14% by root herbivores and affected by an interaction between AMF and decomposers where decomposers had a positive impact on shoot growth only in presence of AMF. AMF increased the shoot biomass of forbs, but reduced the shoot biomass of grasses, while root herbivores only reduced the shoot biomass of grasses. Interactive effects of the soil organisms were detected on the shoot biomasses of Lotus corniculatus, Plantago lanceolata, and Agrostis capillaris. The C/N ratio of the plant community was affected by AMF.In soil, AMF promoted abundances of bacterial, actinomycete, saprophytic and AMF fatty acid markers. Decomposers alone decreased bacterial and actinomycete fatty acids abundances but when decomposers were interacting with herbivores those abundances were increased. Our results suggests that at higher resolutions, i.e. on the levels of individual plant species and the microbial community, interactive effects are common but do not affect the overall productivity and nutrient uptake of a grassland plant community, which is mainly affected by additive effects of functionally dissimilar soil organisms.     

Coatings in cryoaridic soils and other records of landscape and climate changes in the Ak-Khol Lake basin (Tyva)

An assemblage of coatings in cryoaridic soils (Skeletic Cambisols Protocalcic) of southwestern Tyva is considered as a key block of soil memory, which is an intrasoil archive of landscape and climate changes in regional geosystems in the Holocene. The results of hierarchical macro-, meso-, and micromorphological studies of a large assemblage of coatings and the data on the X-ray microanalysis of coatings and composition of stable carbon and oxygen isotopes, as well as on radiocarbon dating of coatings are presented. The synthesis of the results made it possible to reconstruct the main evolutionary phases of cryoaridic soils in the Holocene and landscape and climate changes that induced their alteration. The following climatogenic evolutionary phases of pedogenesis were distinguished: (1) formation of microsparite–micritic dense silica-containing coatings due to short-term fluctuations of the shallow alkaline bicarbonate groundwater level in the semiarid–arid climate; (2) formation of sparitic dense coatings under the slow accumulation of carbonates from low-mineralized bicarbonate water at the higher lake level as compared to the present one in the less arid conditions; (3) the eluvial-illuvial formation of micritic loose coatings under stable automorphic semiarid conditions; (4) formation of Fe-humus coatings in cool humid climate (Al–Fe-humus phase of pedogenesis); (5) the recommencement of the eluvial-illuvial formation of micritic loose coatings under aridization of the last thousand years of the Holocene.     

Evaluation of partial root-zone drying for potential field use as a deficit irrigation technique in commercial vineyards according to two different pipeline layouts

The use of partial root-drying (PRD) irrigation implies doubling pipelines instead of using a conventional single pipeline. However, pipelines can be spaced a short distance apart (e.g. 1 m) along the vine row (“D” layout) or joined with cable ties and laid as a single pipeline (“S” layout). Pipelines in “S” configuration are laid under the vine row, and in “D” at both sides of the vine row. These two different layouts can change the wetted soil zone and affect grapevine response to irrigation. The focus of this study was therefore on establishing the role of pipeline layout in vine-grape (cv. ‘Tempranillo’) response under semi-arid conditions in which PRD is managed as a deficit irrigation technique. Six irrigation treatments were applied, which resulted from the combination of Control (C, full irrigation), PRD and seasonal sustained deficit irrigation (SSDI), and “S” and “D” pipeline layouts. SSDI and PRD were irrigated to 50% C throughout the irrigation season, and C irrigation was scheduled according to a crop water balance technique. Midday stem water potential (Ψ_stem) and leaf conductance (g_l) indicated that, on the whole, PRD treatments had a slightly higher water status than SSDI treatments, but a substantially lower status than C treatments. Use of the “D” pipeline layout significantly reduced Ψ_stem in both PRD and SSDI treatments and in some instances for Control conditions, too. Berry yield, vine intercepted radiation, leaf abscisic acid (ABA) and g_l were highly correlated with Ψ_stem. Differences in water status between PRD-S and SSDI-S, according to a sub-surface irrigation test, seemed to be more related to changes in soil evaporation losses and irrigation efficiency than to any intrinsic PRD effect. PRD-S accounted for water savings equivalent to 10% according to the ratio between applied water and grape production for the SSDI-S treatment, whereas PRD-D berry yield was not significantly different from that associated with the SSDI-S treatment. In conclusion, under the growing conditions of this experiment, PRD-S offered the possibility of slightly improving water conservation when irrigation was applied to the soil surface.     

Evidence from numerical experiments for a feedback dynamo generating Mercury's magnetic field

The observed weakness of Mercury's magnetic field poses a long-standing puzzle to dynamo theory. Using numerical dynamo simulations, we show that it could be explained by a negative feedback between the magnetospheric and the internal magnetic fields. Without feedback, a small internal field was amplified by the dynamo process up to Earth-like values. With feedback, the field strength saturated at a much lower level, compatible with the observations at Mercury. The classical saturation mechanism via the Lorentz force was replaced by the external field impact. The resulting surface field was dominated by uneven harmonic components. This will allow the feedback model to be distinguished from other models once a more accurate field model is constructed from MErcury Surface, Space ENvironment, GEochemistry, and Ranging (MESSENGER) and BepiColombo data.     

Fear erasure in mice requires synergy between antidepressant drugs and extinction training

Antidepressant drugs and psychotherapy combined are more effective in treating mood disorders than either treatment alone, but the neurobiological basis of this interaction is unknown. To investigate how antidepressants influence the response of mood-related systems to behavioral experience, we used a fear-conditioning and extinction paradigm in mice. Combining extinction training with chronic fluoxetine, but neither treatment alone, induced an enduring loss of conditioned fear memory in adult animals. Fluoxetine treatment increased synaptic plasticity, converted the fear memory circuitry to a more immature state, and acted through local brain-derived neurotrophic factor. Fluoxetine-induced plasticity may allow fear erasure by extinction-guided remodeling of the memory circuitry. Thus, the pharmacological effects of antidepressants need to be combined with psychological rehabilitation to reorganize networks rendered more plastic by the drug treatment.     

A stem cell molecular signature

Mechanisms regulating self-renewal and cell fate decisions in mammalian stem cells are poorly understood. We determined global gene expression profiles for mouse and human hematopoietic stem cells and other stages of the hematopoietic hierarchy. Murine and human hematopoietic stem cells share a number of expressed gene products, which define key conserved regulatory pathways in this developmental system. Moreover, in the mouse, a portion of the genetic program of hematopoietic stem cells is shared with embryonic and neural stem cells. This overlapping set of gene products represents a molecular signature of stem cells.     

Interplay of intra- and intermolecular H-bonding in a progressively solvated macrocyclic peptide

Studying solvation of a large molecule on an atomic level is challenging because of the transient character and inhomogeneity of hydrogen bonding in liquid water. We studied water clusters of a protonated macrocyclic decapeptide, gramicidin S, which were prepared in the gas phase and then cooled to cryogenic temperatures. The experiment spectroscopically tracked fine structural changes of the clusters upon increasing the number of attached water molecules from 1 to 50 and distinguished vibrational fingerprints of different conformers. The data indicate that only the first two water molecules induce a substantial change of the gramicidin S structure by breaking two intramolecular noncovalent bonds. The peptide structure remains largely intact upon further solvation, reflecting the interplay between the strong intramolecular and weaker intermolecular hydrogen bonds.