Factor analysis applied in genomic selection studies in the breeding of Coffea canephora

Euphytica - Head splitting is a major physiological disease in cabbage. The most effective approach for controlling head splitting is to deploy genetic resistance by breeding cabbage cultivars with...     

Spatially structured genetic diversity of the Amerindian yam (Dioscorea trifida L.) assessed by SSR and ISSR markers in Southern Brazil

Dioscorea trifida L. (Dioscoreaceae) is among the economically most important cultivated Amerindian yam species, whose origin and domestication are still unresolved issues. In order to estimate the genetic diversity maintained by traditional farmers in Brazil, 53 accessions of D. trifida from 11 municipalities in the states of São Paulo, Santa Catarina, Mato Grosso and Amazonas were characterized on the basis of eight Simple Sequence Repeats (SSR) and 16 Inter Simple Sequence Repeats (ISSR) markers. The level of polymorphism among the accessions was high, 95 % for SSR and 75.8 % for ISSR. The SSR marker showed higher discrimination power among accessions compared to ISSR, with D parameter values of 0.79 and 0.44, respectively. Although SSR and ISSR markers led to dendrograms with different topologies, both separated the accessions into three main groups: I—Ubatuba-SP; II—Iguape-SP and Santa Catarina; and III—Mato Grosso. The accessions from Amazonas State were classified in group II with SSR and in a separate group with ISSR. Bayesian and principal coordinate analyzes conducted with both molecular markers corroborated the classification into three main groups. Higher variation was found within groups in the AMOVA analysis for both markers (66.5 and 60.6 % for ISSR and SSR, respectively), and higher Shannon diversity index was found for group II with SSR. Significant but low correlations were found between genetic and geographic distances (r = 0.08; p = 0.0007 for SSR and r = 0.16; p = 0.0002 for ISSR). Therefore, results from both markers showed a slight spatially structured genetic diversity in D. trifida accessions maintained by small traditional farmers in Brazil.     

High K+ supply avoids Na+ toxicity and improves photosynthesis by allowing favorable K+ : Na+ ratios through the inhibition of Na+ uptake and transport to the shoots of Jatropha curcas plants

This study assessed the relationships between external K⁺ supply and K⁺ : Na⁺ ratios associated with Na⁺ toxicity in Jatropha curcas. Plants were exposed to increasing external K⁺ concentrations (6.25, 12.5, 25, 37.5, and 50 mM), combined with 50 mM NaCl in a nutrient solution. Photosynthesis progressively increased as the external K⁺ : Na⁺ ratios increased up to 0.75. The increase of photosynthesis and plant dry matter correlated positively with K⁺ : Na⁺ in xylem and leaves. The transport rates of K⁺ and Na⁺ from roots to xylem and leaves were inversely correlated. These ions presented an antagonistic pattern of accumulation in all organs. Maximum rates of photosynthesis and plant growth occurred with leaf K⁺ : Na⁺ ratios that ranged from 1.0 to 2.0, indicating that this parameter in leaves might be a good indicator for a favorable K⁺ homeostasis under salinity conditions. The higher K⁺ affinity and selectivity compared with Na⁺ in all organs associated with higher xylem flux and transport to shoots are essential for maintaining adequate K⁺ : Na⁺ ratios at the whole‐plant level. These characteristics, combined with adequate K⁺ concentrations, allow J. curcas to sustain high rates of photosynthesis and growth even under toxic NaCl levels.     

IGF-I,GHR and UCP mRNA expression in the liver and muscle of high- and low-feed-efficiency laying Japanese quail at different environmental temperatures

In this study, we analyzed insulin-like growth factor I (IGF-I), growth hormone receptor (GHR) and uncoupling protein (UCP) mRNA expression in the muscle and liver of high- (0.23 g/g) and low- (0.17 g/g) feed-efficiency (FE) Japanese quail at three different air temperatures: comfortable (25 °C), heat stress (38 °C) for 12 h or cold stress (10 °C) for 12 h. Total RNA was extracted from the liver and breast muscle of each quail, and cDNA was amplified using specific primers for the target genes. Expression was analyzed using quantitative real-time PCR (qRT-PCR). IGF-I mRNA expression was higher in the livers of high-FE quail than in the livers of low-FE quail under both heat and cold stress conditions. High-FE birds also showed higher GHR mRNA expression independent of temperature. UCP mRNA expression in the liver was lower in high-FE birds and higher under heat stress compared with the other conditions. IGF-I mRNA expression was higher in the muscle of high-FE quail under the three conditions tested, and UCP mRNA expression was higher under cold stress. Our results suggest that air temperature affects the expression of genes related to growth and mitochondrial energy production, and quail with different feed efficiencies respond differently to environmental stimuli.     

Chickens treated with a nitric oxide inhibitor became more resistant to Plasmodium gallinaceum infection due to reduced anemia,thrombocytopenia and inflammation

Malaria is a serious infectious disease caused by parasites of the Plasmodium genus that affect different vertebrate hosts. Severe malaria leads to host death and involves different pathophysiological phenomena such as anemia, thrombocytopenia and inflammation. Nitric oxide (NO) is an important effector molecule in this disease, but little is known about its role in avian malaria models. Plasmodium gallinaceum- infected chickens were treated with aminoguanidine (AG), an inhibitor of inducible nitric oxide synthase, to observe the role of NO in the pathogenesis of this avian model. AG increased the survival of chickens, but also induced higher parasitemia. Treated chickens demonstrated reduced anemia and thrombocytopenia. Moreover, erythrocytes at different stages of maturation, heterophils, monocytes and thrombocytes were infected by Plasmodium gallinaceum and animals presented a generalized leucopenia. Activated leukocytes and thrombocytes with elongated double nuclei were observed in chickens with higher parasitemia; however, eosinophils were not involved in the infection. AG reduced levels of hemozoin in the spleen and liver, indicating lower inflammation. Taken together, the results suggest that AG reduced anemia, thrombocytopenia and inflammation, explaining the greater survival rate of the treated chickens.     

Soy protein isolate/poly(lactic acid) injection-molded biodegradable blends for slow release of fertilizers

A slow release fertilizer system consisting of materials derived exclusively from biomass, and suitable for i) production of injection-molded parts such as containers for growing plants, and ii) use as granules, is reported. Soy (Glycine max L. Merr.) protein isolate/poly(lactic acid) blends plasticized with triacetin (SPI/PLA-TA) were used as matrix for NPK fertilizer incorporation. Upon melt processing, this composite material formed a highly ordered porous matrix of SPI in which PLA domains are homogeneously dispersed with NPK salts. Dynamic conductivity measurements indicated good release properties as the cumulative amount increased much slower with time as compared to pure NPK sample. Biodegradation was accessed by examining weight loss and surface morphology as a function of incubation time in soil.     

Influence of stocking density on the behaviour of juvenile Litopenaeus vannamei (Boone, 1931)

Applied ethology can help to improve Litopenaeus vannamei aquaculture. Our purpose was to demonstrate an influence of stocking density on behaviour. The shrimp were first distributed in aquaria and observed via an ad libitum observational method to construct an ethogram of social and feeding behavioural categories. The resulting ethogram consisted of retreat, cannibalism, getting to the feeding tray, occupying the feeding tray and getting feed. We then kept shrimp in aquaria at densities of 50, 75 and 100 animals m^?2 and observed them via a behavioural sampling method using our ethogram as well as focal animal sampling of behaviours derived from the literature. These literature‐derived behaviours consisted of inactivity, feeding, crawling, exploration, burying, swimming and cleaning. We found that stocking density affects the behaviour of the shrimp. Optimal searching and feeding and a low frequency of crawling and swimming occurred at a density of 50 animals m^?2, indicating a higher potential for growth and welfare at this density.     

Effects of ethylene and 1-methylcyclopropene (1-MCP) on gene expression and activity profile of alpha-1,4-glucan-phosphorylase during banana ripening

Starch phosphorylases are enzymes that can use starch as substrate, and they are supposed to act in both in starch synthesis and degradation. This paper reports the effects of ethylene and 1-methylcyclopropene (1-MCP) on the degradation of starch and phosphorylase activity and gene expression. The results indicate that phosphorylase activity is induced during ripening and that it is associated with the onset of starch degradation. The regulation of banana phosphorylase activity is mainly dependent on gene expression, and the absence of ethylene perception by 1-MCP had a positive effect. However, this effect can be precluded by increased levels of ethylene, both autocatalytic and exogenous.