Swimming depths of the giant jellyfish <Emphasis Type="Italic">Nemopilema nomurai</Emphasis> investigated using pop-up archival transmitting tags and ultrasonic pingers

The swimming depths of 12 individual Nemopilema nomurai with bell diameters of 0.8–1.6 m were investigated using pop-up archival transmitting tags and ultrasonic pingers, and the validity of the research method was evaluated. The N. nomurai studied frequently showed vertical movement, with the swimming depth ranging from 0 to 176 m, The mean swimming depths of most individuals were less than 40 m. The swimming depths of N. nomurai in the northern Japan Sea in the winter were mostly deeper than those of this species in the southern Japan Sea in the autumn. This result suggests that the range of the depths almost depends on the vertical structure of the ocean. Swimming depths during the nighttime were significantly deeper than those during the daytime. More specifically, during the daytime, the swimming depths in the afternoon tended to be shallower than those in the morning, while during the nighttime, the swimming depths after midnight were deeper than those before midnight.     

The T allele at the g.1471620G>T in the EDG1 gene associated with high marbling in Japanese Black cattle is at a low frequency in breeds not selected for marbling

Our previous study detected a single nucleotide polymorphism (SNP), g.1471620G > T , in the 5' flanking region of the endothelial differentiation sphingolipid G-protein-coupled receptor 1 ( EDG1 ) gene, which has been considered as a positional functional candidate for the gene responsible for marbling, and showed association of the g.1471620G > T SNP with marbling in Japanese Black beef cattle. In the present study, we investigated the allele frequency distribution of the g.1471620G > T SNP among the 5 cattle breeds, Japanese Black, Japanese Brown, Japanese Short Horn, Holstein, and Brown Swiss breeds. The T allele at the g.1471620G > T SNP associated with high marbling was found at high frequency in Japanese Black breed that has been subjected to a strong selection for high marbling, while the allele was absent or at very low frequencies in the other breeds that have not been strongly selected for high marbling. Based on this finding, we hypothesized that the pressure of the strong selection for high marbling in Japanese Black breed has increased the frequency of the T allele at the g.1471620G > T SNP in the EDG1 .     

Nitrous oxide evolved from soil covered with plastic mulch film in horticultural field

Soil solarization practice, in which soil is covered with plastic mulch film and exposed to high temperature prior to crop cultivation, is expected to be an effective method for reducing weeds and pathogenic microorganisms without using agricultural chemicals. Although the production of nitrous oxide (N₂O), a major greenhouse gas, is enhanced in fertilized soil covered with plastic mulch films, its transport route to the atmosphere has not been sufficiently elucidated to date. In this study, we investigated the N₂O evolution from plastic-mulch-film-covered agricultural soil. In a horticultural field where ridge soil was covered with a plastic mulch film after fertilization, we observed significant N₂O flux from the soil surface of the unfertilized furrow between the ridges, indicating the horizontal diffusion of N₂O from the ridge soil covered with the mulch film to the adjacent furrow soil surface. On the other hand, the measurement of the permeance (permeation coefficient) of the plastic mulch film for gaseous N₂O by laboratory experiment revealed that N₂O gradually permeated the mulch film; the permeance increased exponentially with an increase in ambient temperature, indicating possible N₂O emission by permeation through the mulch film under field conditions. In winter, the amount of N₂O emission by permeation through the mulch film was estimated to be lower than that emitted from the furrow soil surface, and it was lower than that in summer. On the other hand, it was estimated to be much higher in summer owing to the higher permeance of the film at high temperatures.     

Effect of soil solarization on subsequent nitrification activity at elevated temperatures

Soil solarization is a nonchemical method of soil disinfection achieved by covering the soil surface with sheets of vinyl plastic to generate elevated soil temperature, generally over 45°C. Such elevated temperatures may be detrimental to some nitrifying microorganisms and favorable to others. However, little information exists to indicate how nitrification activity in soil is affected after solarization. We performed several experiments to investigate the effects of soil solarization on nitrification activity. We found that: (1) if a soil was subjected to pretreatment of 45 or 50°C for as little as 1 d, nitrification activity in a subsequent incubation at 30°C was less than that of a soil that did not receive any high-temperature pretreatment. However, if a soil received pretreatments of 45 or 50°C for more than 7 d, nitrification activity in a subsequent incubation at 45 or 50°C was greater than that of soil that did not receive high temperature pretreatment. (2) Nitrification activity in three kinds of soil taken from 0–5 cm depth after solarization treatment was greater at 45°C than 30°C. (3) Nitrification activity at 45°C in soil that had received solarization in the preceding year was greater than that in soil that had not been subjected to solarization. This was consistent with the fact that the population densities of ammonia oxidizers were greater in soils that had been subjected to solarization. These results suggest that soil solarization induces nitrifying microorganisms that are more active at 45–50°C than they are at 30°C, and that the effect of solarization on nitrification persists until the next crop season.     

Measurement of Si adsorption and “Active Si” in a soil amended with slag fertilizers by using stable isotope 30SP

The silicic acid adsorption by a soil (Eutric Gleysols) where slag fertilizers were applied was measured by the addition of a silicic acid solution labelled with ³⁰Si after soil incubation, in order to study the effect of slag application on the specific Si adsorption by the soil and to estimate the amount of Si in the soil solid phase which can easily enter the soil solution. It was evident that the application of slags increased the ability of soil to adsorb Si. It was also shown that the ³⁰Si added was diluted with not only the Si present in the soil solution but also the Si dissolved from the soil solid phase. We proposed the use of the term “active” for Si in soil which can take part in the isotopic dilution within 1 h. The amount of active Si in the soil solid and liquid phases (D ₆₀ - value) was calculated from the ³⁰Si content in the soil solution and compared with the amount of Si taken up by rice plant (Oryza sativa L.), which was determined in our previous study. The buffering capacity of the soil for Si, which can reflect the ability of soil to maintain the Si concentration in the soil solution constant when Si is added to or removed from the soil, was also determined. The D ₆₀ - value and the Si buffering capacity of the soil increased by slag application. These increases were large when the alkalinity of the applied slags was high. The correlation study revealed that the D ₆₀ - value was a better index of Si availability of the soil than the amount of Si dissolved from the soil solid phase during the incubation when the slags were previously applied.     

Field trap test for bioassay of synthetic (1<Emphasis Type="Italic">S</Emphasis>,4<Emphasis Type="Italic">R</Emphasis>)-4-isopropyl-1-methyl-2-cyclohexen-1-ol as an aggregation pheromone of <Emphasis Type="Italic">Platypus quercivorus</Emphasis> (Coleoptera: Platipodidae)

An ambrosia beetle, Platypus quercivorus, is a vector of Japanese oak wilt, which causes massive mortality of oak trees in Japan. Previous studies have identified (1S,4R)-4-isopropyl-1-methyl-2-cyclohexen-1-ol ((−)-IMCH) as the major component of the aggregation pheromone of P. quercivorus. We tested the ability of synthetic (−)-IMCH to attract P. quercivorus adults. The synthetic compound attracted 14.4 times as many P. quercivorus, of both sexes, as control traps. Control and (−)-IMCH-baited traps both captured 3.32 times as many males as females, probably because of the nature of Lindgren funnel traps and of male-biased emergence sex ratio early in the season of adult flights. (−)-IMCH was proved to be a major component of the aggregation pheromone of P. quercivorus.     

Development of structural composite products made from bamboo I: fundamental properties of bamboo zephyr board

A study was conducted to determine the suitability of zephyr strand from moso bamboo (Pyllostachys pubescens Mazel) for structural composite board manufacture. Thirty-two 1.8×40×40cm bamboo zephyr boards (BZB) were produced using four diameters of zephyr strand (9.5, 4.7, 2.8, and 1.5mm) and four target densities (0.6, 0.7, 0.8, and 0.9g/cm³). Results indicate that BZB exhibits superior strength properties compared to the commercial products. The size of the zephyr strand and the level of target density had a significant effect on the moduli of elasticity and rupture, internal bond strength, water absorption, and thickness swelling, but they did not have a significant effect on linear expansion. With regard to the physical properties, BZB exhibited less thickness swelling and exhibited good dimensional stability under dry-wet conditioning cycles.Part of this research was presented at the 48th annual meeting of the Japan Wood Research Society, Shizuoka, April 1998; it was reported at the 4th Pacific Rim Bio-Based Composite Symposium, Bogor, Indonesia, November 1998     

Two Akabane virus glycoprotein Gc domains induce neutralizing antibodies in mice

Akabane virus (AKAV), belonging to the genus Orthobunyavirus and family Peribunyaviridae, causes reproductive and congenital abnormalities in ruminants. Its envelope glycoprotein Gc is a neutralizing antigen, on which at least five distinct antigenic regions have been identified. We attempted to identify the domains using truncated recombinant AKAV Gc proteins expressed in Escherichia coli and monoclonal antibodies (mAbs) with AKAV-neutralizing activity. Dot blot analysis revealed that amino acid positions 1–97 and 189–397 (Gc_1–97 and Gc_189–397) in the truncated recombinant proteins reacted with the mAbs. Additionally, AKAV was neutralized by sera from mice immunized with these recombinant proteins. The results suggested that the two domains contain neutralizing epitopes and could be potential subunit vaccines against AKAV.     

Viral RNA extraction using an automatic nucleic acid extractor with magnetic particles and genetic characterization of bovine viral diarrhea virus in Tokachi Province,Japan, in 2016–2017

In this study, the viral genome extraction performance of automatic nucleic acid extractors and manual nucleic acid extraction kits was compared. We showed that compared with manual kits, the automatic extractors showed superior genome extraction performance using bovine viral diarrhea virus (BVDV) genome-positive cattle sera and bovine coronavirus/infectious bovine rhinotracheitis virus-spiked cattle nasal swabs. In addition, the subgenotyping of BVDV strains detected in Tokachi Province in Japan during 2016–2017 was performed. Results showed that most of these BVDV strains belonged to subgenotype 1b, while few strains belonged to subgenotypes 1a and 2a. This study showed the high applicability of automatic nucleic acid extractors in extracting multiple viral genomes and the dominant subgenotype of BVDV in Tokachi.