Displacement above the hypocenter of the 2011 Tohoku-Oki earthquake

The moment magnitude (M(w)) = 9.0 2011 Tohoku-Oki mega-thrust earthquake occurred off the coast of northeastern Japan. Combining Global Positioning System (GPS) and acoustic data, we detected very large sea-floor movements associated with this event directly above the focal region. An area with more than 20 meters of horizontal displacement, that is, four times larger than those detected on land, stretches several tens of kilometers long along the trench; the largest amount reaches about 24 meters toward east-southeast just above the hypocenter. Furthermore, nearly 3 meters of vertical uplift occurred, contrary to observed terrestrial subsidence.     

Mass propagation method from the cutting of three dipterocarp species

We developed a vegetative propagation system for mass-producing three dipterocarps species,Shorea selanica Bl.,Shorea leprosula Mig., andShorea platyclados Sloot. This system uses fog evaporative cooling inside a greenhouse to reduce the leaf-to-air vapor pressure deficit (leaf-to-air VPD) inside the propagator, even under high irradiance conditions. This cooling method has no negative influence on medium conditions such as overwetting. A plastic tent propagator combined with this cooling method was used for vegetative propagation experiments. In mass-production experiments, the annual rooting percentages from the cuttings were low in the first 2 years (1997–1998) due to operational problems of the tent propagator (S. selanica, 48–51%;S. leprosula, 56–59%;S. platyclados: 50–63%). A hard cover propagator improved the rooting percentages in the mass-production experiments in 1999 because it made operations easier (S. selanica, 70%;S. leprosula, 77%;S. platyclados, 77%). This system, which uses a combination of fog evaporative cooling and a hard plastic propagator, should be useful for the mass propagation of these dipterocarp planting stocks. This study was carried out under a joint project of the Ministry of Forestry, Indonesia and Komatsu Ltd. The project was supported by Research Association for Reforestation of Tropical Forest (RETROF) organized by Japanese Forestry Agency.     

The T allele at the g.1471620G>T in the EDG1 gene associated with high marbling in Japanese Black cattle is at a low frequency in breeds not selected for marbling

Our previous study detected a single nucleotide polymorphism (SNP), g.1471620G > T , in the 5' flanking region of the endothelial differentiation sphingolipid G-protein-coupled receptor 1 ( EDG1 ) gene, which has been considered as a positional functional candidate for the gene responsible for marbling, and showed association of the g.1471620G > T SNP with marbling in Japanese Black beef cattle. In the present study, we investigated the allele frequency distribution of the g.1471620G > T SNP among the 5 cattle breeds, Japanese Black, Japanese Brown, Japanese Short Horn, Holstein, and Brown Swiss breeds. The T allele at the g.1471620G > T SNP associated with high marbling was found at high frequency in Japanese Black breed that has been subjected to a strong selection for high marbling, while the allele was absent or at very low frequencies in the other breeds that have not been strongly selected for high marbling. Based on this finding, we hypothesized that the pressure of the strong selection for high marbling in Japanese Black breed has increased the frequency of the T allele at the g.1471620G > T SNP in the EDG1 .     

Two forms of cytochrome P450 cDNA from 3-methylcholanthrene-treated European eel Anguilla anguilla

ABSTRACT:     The cytochrome P450 (CYP) represents a large group of microsomal monooxygenases that catalyze drugs as well as a host of lethal environmental contaminants such as dioxins, leading to either detoxification and excretion from the animal or generation of carcinogenic intermediates. In the present study two forms of cDNA were cloned (Eu MC1 and Eu MC2) for European eel CYP1A genes by polymerase chain reaction (PCR) techniques. The cDNA of Eu MC1 was 3368 bp long coding 521 amino acid residues, and that of Eu MC2 was 2464 bp long coding 517 amino acid residues. Identities of deduced amino acid sequences between Eu MC1 and Japanese eel CYP1A1 and that between Eu MC2 and the second form of Japanese eel CYP1A were 98% and 97%, respectively, showing decisively that Eu MC1 and Eu MC2 are orthologous to Japanese eel CYP1A1 and the second form of CYP1A, respectively. A striking difference between the two eel species was that the Eu MC1 peptide was two amino acid residues longer than that of the Japanese eel CYP1A1. Existence of two loci of CYP1A in Japanese and European eels may suggest that the two forms of CYP1A exist widely among the eel species, because the divergence between the two eel species has been shown to be close to the basal divergence among eels. The identities in CYP1A may help to estimate genetic distance between European and Japanese eels.     

The relationship between plasma leptin concentrations and the distribution of body fat in crossbred steers

The objective of the present study was to examine the relationship between plasma leptin levels and fat distribution in crossbred steers. Twenty-four crossbred steers (Japanese Black × Holstein) were used in this study. Six steers belonged to the growing phase (11 months of age), and 18 steers to the finishing phase (from 21 to 28 months of age). Plasma leptin levels correlated positively with body fat weight ( r  = 0.807, P  < 0.01), body fat percentage ( r  = 0.802, P  < 0.01), visceral fat weight ( r  = 0.807, P  < 0.01), visceral fat percentage ( r  = 0.780, P  < 0.01), subcutaneous fat weight ( r  = 0.745, P  < 0.01), subcutaneous fat percentage ( r  = 0.734, P  < 0.01), intermuscular fat weight ( r  = 0.793, P  < 0.01), intermuscular fat percentage (0.775, P  < 0.01), renal fat weight ( r  = 0.694, P  < 0.01), renal fat percentage ( r  = 0.642, P  < 0.01), subcutaneous fat thickness ( r  = 0.755, P  < 0.01), intermuscular fat thickness ( r  = 0.721, P  < 0.01), beef marbling score ( r  = 0.706, P  < 0.01) and the crude fat content of Musculus longissimus thoracis ( r  = 0.592, P  < 0.01). The location of fat deposits did not affect the correlation values. However, when steers were divided into growing ( n  = 6) and finishing ( n  = 18) groups, there was no significant correlation between plasma leptin levels and the carcass characteristics related to fat deposition (fat weight, fat percentage, carcass traits) in either group. These results suggest that plasma leptin levels in crossbred steers positively correlate with body fat content and carcass traits when these parameters vary widely.     

Response of Biochemical Markers of Bone Metabolism to Exercise Intensity in Thoroughbred Horses

We studied the response of biochemical markers of bone metabolism to exercise intensity in horses. Four horses were walked on a mechanical walker for one week (pre-exercise). Then they performed low-speed exercise on a high-speed treadmill in the first week and medium-speed exercise in the second week and high-speed exercise in the third week of training. We measured two indices of bone resorption, serum hydroxyproline concentration and the urinary deoxypyridinoline/creatinine ratio, and serum osteocalcin (OC) concentration as an index of bone formation. Both indices of bone resorption gradually decreased during the experiment. Serum OC concentration did not change in the first week but was significantly lower in the second and the third weeks compared to in the pre-exercise period and in the first week. These results suggest that the low-speed exercise decreased bone resorption but did not affect bone formation, which possibly results in increasing bone mineral content and strengthening of bones. The high-speed exercise decreased bone formation and bone resorption, i.e., bone turnover was suppressed. The low-speed exercise may be preferable for increasing bone mineral content.     

Gentian Kobu-sho-associated virus: a tentative, novel double-stranded RNA virus that is relevant to gentian Kobu-sho syndrome

A virus-like dsRNA of about 23 kbp was detected in gentian plants showing Kobu-sho syndrome including stunting, shortened internodes, and tumors on stems, nodes and roots. Nucleotide sequence analysis has suggested that this dsRNA is related to Pestivirus species but not to any other plant viruses. It was protected from externally added RNase, suggesting that the dsRNA is encapsidated. The dsRNA was co-extracted in a crude homogenate of glutaraldehyde-fixed tissue with the virus-like particles that have been associated previously with Kobu-sho syndrome in gentian (Usugi et al. Jpn J Phytopathol 76:21–24, 2010). The RNA sequence was detected in more than 99 % of Kobu-sho gentian individuals but in less than 20 % of apparently healthy gentian individuals from fields affected with Kobu-sho. Thus, we propose naming the virus Gentian Kobu-sho-associated virus.