Using 3D animations to teach intracellular signal transduction mechanisms: taking the arrows out of cells

Traditional methods of teaching intracellular biological processes and pathways use figures or flowcharts with the names of molecules linked with arrows. Many veterinary students, presented with such material, simply memorize the names or chemical structures of the molecules and are then likely to forget the material once the examination is completed. To address this problem, the authors designed, created, and field-tested new teaching media that incorporate realistic three-dimensional (3D) animations depicting the dynamic changes that occur in intracellular molecules during cellular activation. Testing found that veterinary students taught using traditional teaching media (e.g., lectures, handouts, textbooks) are proficient in memorizing the names and order of intracellular molecules but unable to appreciate the interactions between these elements or their spatial relationships within cells. In contrast, more than 90% of veterinary students taught using 3D animations not only recall the facts about the intracellular elements but also develop accurate mental images of the interactions among these molecules and their spatial relationships. These findings strongly suggest that the comprehension of complex biological processes by veterinary students can be enhanced by the use of dynamic 3D depictions of these processes in the classroom.     

Study of the Structure–Activity Relationship of an Anti-Dormant Mycobacterial Substance 3-(Phenethylamino)Demethyl(oxy)aaptamine to Create a Probe Molecule for Detecting Its Target Protein

The current tuberculosis treatment regimen is long and complex, and its failure leads to relapse and emergence of drug resistance. One of the major reasons underlying the extended chemotherapeutic regimen is the ability of Mycobacterium tuberculosis to attain a dormant state. Therefore, the identification of new lead compounds with chemical structures different from those of conventional anti-tuberculosis drugs is essential. The compound 3-(phenethylamino)demethyl(oxy)aaptamine (PDOA, 1), isolated from marine sponge of Aaptos sp., is known as an anti-dormant mycobacterial substance, and has been reported to be effective against the drug resistant strains of M. tuberculosis. However, its target protein still remains unclear. This study aims to clarify the structure–activity relationship of 1 using 15 synthetic analogues, in order to prepare a probe molecule for detecting the target protein of 1. We succeeded in creating the compound 15 with a photoaffinity group that retained antimicrobial activity, which proved to be a suitable probe molecule for identifying the target protein of 1.     

Inheritance of leaf angle in Triticum aestivum L.

Summary A 6×6 diallel was prepared to study the inheritance of leaf angle in T. aestivum L. Genetic analysis in terms of diallel cross parameters and graphic analysis indicated the control of additive gene effects in the expression of this character. The results of F₁ analysis were supported by the analysis of F₂ data.     

Seedling emergence,coleoptile length,and plant height relationships in crosses of dwarf and standard-height wheats

Summary Seedling emergence was closely correlated with coleoptile length and plant height among parents, F₂ and F₃, populations of crosses involving dwarf wheats Olesen Dwarf (CI 14497), Norin 10 derivative D6301, Tom Thumb derivative D6899, and the standard-height varieties Ramona 50 and Nainari 60. Genetic mechanisms that governed plant height also influenced coleoptile length, but the relative effects of genes showing dominant or epistatic effects appeared to be different. With respect to the two parents involved in each of 15 crosses, mean F₂ coleoptile lengths were consistently closer to the low parent value than were corresponding mean F₂ plant heights. A slight curvilinear relationship was also found between coleoptile length and plant height of F₃ lines. The results suggest that selection of semidwarf wheats with long coleoptiles and improved emergence properties from crosses involving the dwarf wheats of this study would be unlikely.     

Current and historical inputs of mercury to high-latitude lakes in Canada and to Hudson Bay

Sediment cores collected from several lakes in northern Canada have been analyzed for mercury and several other chemical contaminants. Sites ranged from the Experimental Lakes Area of northwestern Ontario, north to Cornwallis Island, and west to the southern Yukon. Cores were sliced at sites of collection and individual slices were freeze dried and analyzed for Pb-210 and Cs-137 to estimate average time intervals of deposition. The earliest date estimated by Pb-210 was about 1850, and mercury concentrations in some lakes were clearly increasing before then, assuming no vertical movements of mercury within the sediments. Extrapolation of dates downward to deeper slices, assuming a constant sedimentation rate, indicated that in some lakes mercury inputs increased slowly even in the 1500's, more rapidly after 1750, and more rapidly yet over the current century. These increases are interpreted as increased fluxes of mercury to the lakes as a result of long-range transport of atmospheric mercury, since there are no local industrial sources of mercury. Slices taken near the bottom of a core are taken to estimate the geological component while elevations in excess of that in surface slices are taken to represent contamination from fallout. This partitioning suggests that sediments in the eastern Northwest Territories are dominated by pollution, while those from the western Northwest Territories are influenced more by their geological settings. Two cores from Hudson Bay suggest that mercury is increasing there too, but has not yet exceeded geological sources. Mercury shows little or no tendency to decline in the most recent slices; indicating that inputs of mercury remain at or near their historical maxima. Given relatively high and continuing inputs of mercury to northern lakes it seems likely that some portion of that mercury may find its way into the food chain, hence the long-term prospect is for increasing levels of mercury in northern fish.     

A comprehensive framework of forest stand property–density relationships: perspectives for plant population ecology and forest management

? Context

There are many stand property–density relationships in ecology which represent emergent properties of plant populations. Examples include self-thinning, competition–density effect, constant final yield, and age-related decline in stand growth. We suggest that these relationships are different aspects of a general framework of stand property–density relationships.

? Aims

We aim to illustrate the generalities and ecological implications of stand property–density relationships, and organize them in a comprehensive framework.

? Methods

We illustrate relationships between stand property and density (1) at one point in time, (2) over time, and (3) independent of time. We review the consequences of considering different variables to characterize stand property (mean tree size, mean tree growth, stand growth, stand yield, stand leaf area).

? Results

We provide a framework that integrates the broad categories of stand property–density relationships and individual expressions of these relationships. For example, we conclude that constant final yield is a special case of the growth–growing stock relationship for life forms were yield is a reasonable approximation of growth (non-woody plants).

? Conclusion

There is support in the literature for leaf area being broadly integrative with respect to various expressions of stand property–density relationships. We show how this is and suggest implications for plant population ecology and forest management.     

Top Dressing of Feed with Desiccated Chlamydospores of Duddingtonia flagrans for Biological Control of the Pre-Parasitic Stages of Ovine Haemonchus contortus

Feeding trials were conducted with stall-fed sheep parasitized with Haemonchus contortus. For 10 days they were offered 250 g of a concentrate feed that had been top-dressed with desiccated chlamydospores of Duddingtonia flagrans at 1×10⁵, 5×10⁵, 1×10⁶ or 2×10⁶ chlamydospores/kg body weight. Pooled faeces from each group on day 7 of spore feeding were spread on different pasture plots. On day 28 after the start of spore feeding, further pooled faeces from each group were spread on the same plots. The larval burdens on the plots were monitored for 2 months and the larval harvest from in vitro faecal cultures were monitored regularly. The application of 1×10⁶ or more spores/kg body weight virtually eliminated larvae from both the pasture and the faecal cultures. The application of as few as 1×10⁵ spores/kg body weight had a profound impact on larval recovery. The effect persisted while the spores were being fed but not for more than 4 days following discontinuation of spore feeding. Top dressing supplementary feed with dried chlamydospores offers a potential way of using D. flagrans for biological control of the pre-parasitic stages of H. contortus.     

Genetical relationships between reactions to bacterial leaf spot,yellow mosaic and Cercospora leaf spot diseases in mungbean (Vigna radiata)

Summary Studies on the inheritance pattern of bacterial leaf spot (BLS), yellow mosaic (YM) and Cercospora leaf spot (CLS) reactions in crosses of BLS and YM resistant/tolerant but CLS susceptible × CLS resistant but BLS and YM susceptible parents indicated that resistances to BLS and CLS were governed by single dominant genes, whereas YM tolerance was a monogenic recessive character. The studies also indicated that these three genes were inherited independently. The simple inheritance pattern and independent assortment of the genes governing resistance/tolerance to these diseases suggest that the usual breeding methods will be adequate to develop multi-disease resistant mungbean cultivars.Paper XII in the series Studies on resistance in crops to bacterial diseases in India.     

Root zone temperature alters storage root formation and growth of sweetpotato

Large mounds amended with plant residues are a common cultivation method for sweetpotato (Ipomoea batatas) in the western parts of the Papua New Guinea highlands, with a suggested benefit of elevated root zone temperature (RZT) from decomposition. This study aimed to evaluate whether RZT affects the formation and growth of sweetpotato storage roots. Experiments evaluated the effects of a constant elevated RZT on the Beauregard cultivar and of a short‐term increase in RZT on the Beauregard and Northern Star cultivars. Plants were grown in 18‐L pots divided into a control compartment (constant RZT at 20°C) and a treated compartment (RZT at 30, 40 or 50°C). Constant elevated RZT was maintained until harvest, while short‐term increase in RZT occurred in weeks 2 and 3 only. Constant elevated RZT did not affect the total number of storage roots, but RZT of 30°C and above reduced the dry‐biomass of storage roots. The short‐term increase in RZT did not alter the total number or dry‐biomass of storage roots in Beauregard, while both of these attributes were reduced at RZT of 40°C or above in Northern Star. Elevated RZT inhibited dry‐biomass accumulation of storage root, with a more pronounced impact at constant elevated RZT. These results demonstrate that any benefits of the mound culture on sweetpotato yield production do not arise through the influence of temperature elevation.