Marine Sulfated Polysaccharides as Promising Antiviral Agents: A Comprehensive Report and Modeling Study Focusing on SARS CoV-2

SARS-CoV-2 (severe acute respiratory syndrome coronavirus-2) is a novel coronavirus strain that emerged at the end of 2019, causing millions of deaths so far. Despite enormous efforts being made through various drug discovery campaigns, there is still a desperate need for treatments with high efficacy and selectivity. Recently, marine sulfated polysaccharides (MSPs) have earned significant attention and are widely examined against many viral infections. This article attempted to produce a comprehensive report about MSPs from different marine sources alongside their antiviral effects against various viral species covering the last 25 years of research articles. Additionally, these reported MSPs were subjected to molecular docking and dynamic simulation experiments to ascertain potential interactions with both the receptor-binding domain (RBD) of SARS CoV-2’s spike protein (S-protein) and human angiotensin-converting enzyme-2 (ACE2). The possible binding sites on both S-protein’s RBD and ACE2 were determined based on how they bind to heparin, which has been reported to exhibit significant antiviral activity against SARS CoV-2 through binding to RBD, preventing the virus from affecting ACE2. Moreover, our modeling results illustrate that heparin can also bind to and block ACE2, acting as a competitor and protective agent against SARS CoV-2 infection. Nine of the investigated MSPs candidates exhibited promising results, taking into consideration the newly emerged SARS CoV-2 variants, of which five were not previously reported to exert antiviral activity against SARS CoV-2, including sulfated galactofucan (1), sulfated polymannuroguluronate (SPMG) (2), sulfated mannan (3), sulfated heterorhamnan (8), and chondroitin sulfate E (CS-E) (9). These results shed light on the importance of sulfated polysaccharides as potential SARS-CoV-2 inhibitors.     

Natural regeneration of Pinus brutia Ten. in a recreational public forest in Zawita-Kurdistan region,Iraq

Zawita natural forest has recently has been subject to mass recreational activities during spring that have denuded large areas of the forest.It was thus essential to assess regeneration before designing optimizing strategies.To this end,we studied the overstory canopy and microhabitat conditions for recruitment of Pinus brutia Ten in 10 plots(20×25 m)on the southern aspects where the Zawita natural forest is still present.In total,1540 regenerating P.brutia were recorded,854 seedlings,597 saplings,and 89 trees.Seedlings and saplings were more frequent beyond the canopy than under the canopy of the parent trees.Regeneration requirements differed between seedlings and saplings.The probability of the occurrence of seedlings was negatively correlated with increasing litter depth and increasing soil compaction.The density of saplings only showed a positive significant correlation with increasing slope.The nearest neighbor index showed a trend toward a positive spatial association between understory shrubs with their neighboring seedlings at a mean distance of 1.6 m.Overall,the study highlighted the requirements for seedling regeneration as a relatively open canopy cover,a light understory litter layer,and noncompacted soils.These results are a step towards designing effective management and restoration programs.     

Wood‐rotting basidiomycetes are a minor component of fungal communities associated with Acacia hybrid trees grown for sawlogs in South Vietnam

Acacia hybrid (Acacia mangium × Acacia auriculiformis) clones are widely planted in Vietnam with a total of approximately 400,000 ha to meet the demand for pulpwood, sawn timber and wood chip exports. Silvicultural techniques such as pruning and thinning have been applied to improve productivity and sawlog quality of Acacia hybrid plantations. However, those techniques may also create opportunities for wood decay fungi to enter the Acacia hybrid stems through wounds and cause stem defects that reduce sawlog quality and the value of the plantation. The presence of fungal decay agents in Acacia hybrid trees was examined in two Vietnamese plantations. In July 2011, just prior to a second thinning, discoloured wood samples were taken from a three‐year‐old Acacia hybrid plantation at Phan Truong Hai for the isolation of fungi. In July 2012, approximately 18 months after pruning and thinning treatments, discoloured wood samples were taken from a three‐year‐old Acacia hybrid plantation at Nghia Trung for the isolation of fungi. DNA sequencing of the rDNA ITS identified the isolates. In May 2015, approximately 4 years after thinning and fertilizer treatments, discoloured and decayed wood samples were taken from the above (7‐year‐old) Acacia hybrid plantation at Phan Truong Hai for fungal identification. DNA was extracted directly from discoloured and decayed wood samples and fungal rDNA ITS amplicons sequenced on a Roche 454 sequencer. The results showed that silvicultural treatments did not affect the fungal communities associated with discoloured and decayed wood of Acacia hybrid plantation at Phan Truong Hai. A total of 135 fungal species or OTUs (operational taxonomic units) were identified, including 82 members of Ascomycota and 52 Basidiomycota.     

Effect of Plant Density on Wild Oat Competition with Competitive and Non Competitive Wheat Cultivars

Wild oat (Avena ludoviciana) is one of the worst weeds in wheat fields.The effect of wheat density on wild oat competition with more or less competitive wheat cultivars (Triticum aestivum) was investigated at the Experimental Farm of Plant Pests and Diseases Research Institute,Karaj,Iran.The experiment was established as a factorial combination of wheat varieties Roshan as non-competitive and Niknejad as competitive; three wheat densities (recommended density,recommended+25％,and recommended+50％,corresponding respectively with 300,375,and 450 plants m-2 for Roshan and 400,500,and 600 plants m-2 for Niknejad) and four wild oat densities (0,25,50,and 75 plants m-2) were selected for this experiment.Hyperbolic equations were used to describe relationship between yield and weed density.Increase in wheat density reduced wild oat biomass.Maximum wild oat biomass was achieved at the highest density of the wild oat together with the lowest wheat density.The results showed that higher densities of wheat are able to suppress wild oat dry matter production.Inter-specific competition in Niknejad was 1.7 times more than that in Roshan.Maximum yields of Niknejad and Roshan in the presence of wild oat were obtained at recommended density+25％ and recommended density,respectively.Increase in wheat density leads to a decrease in wheat yield due to an increase in intra-specific competition.Increase in wild oat density results in the reduction of wheat yield through decrease in fertile tiller per plant and spike m-2.     

Dantrolene may prevent organophosphate-induced oxidative stress and muscle injury

The effects of dantrolene against fenthion-induced oxidative stress and muscle injury were investigated in rats. Malondialdehyde (MDA), reduced glutathione (GSH) ascorbic acid, retinol and β-carotene levels in blood were measured. Histopathological alterations and apoptosis in diaphragm were examined. Fenthion increased the level of MDA and decreased the levels of GSH in blood. Dantrolene administration prevented the rise in MDA levels and increased the GSH levels. There was no significant difference between β-carotene levels of experimental groups. However, fenthion toxicity led to decrease in ascorbic acid and retinol levels, dantrolene administration significantly prevented this decrease. Dantrolene significantly decreased the inflammation, edema and muscle necrosis or apoptosis in diaphragm muscle. Results of present study showed that toxicity of organophosphate compound fenthion increases the lipid peroxidation and depresses endogenous antioxidative systems, and leads to muscle injury in organism. Again, dantrolene administration prevents lipid peroxidation, augments antioxidant activity, and decreases muscle injury and apoptosis.     

Two new lathyrane type diterpenoids from Euphorbia aellenii

Euphorbia aellenii Rech. f. (Euphorbiaceae) afforded a cytotoxic chloroform fraction from which two new esters of 6(17)-epoxylathyrol were identified (1 and 2). The structure of these compounds was elucidated by spectroscopic methods.     

A GIS based spatially explicit model of dispersal agent behavior

Spatial simulation models of seed dispersal have been constructed at the landscape level under the assumption of ubiquitous or uniform dispersibility. The anisotropic nature of vegetation distribution caused by different dispersal agents such as wind, gravity, water and animals were ignored. We propose a prototype of a GIS-based spatially explicit model of dispersal agent behavior (SEMODAR) to simulate the seed dispersal process by considering the unique behavioral characteristics of each seed dispersal agent. As a result, the influence of dispersal agent behavior on the species coexistence in competitive communities with and without habitat destruction could be explored. The model consists of four module components: dispersal rules, species competition, species colonization, and habitat destruction. An experimental simulation was conducted using three hypothetical species with differing competitive and migration abilities in both intact and disturbed conditions for 250 years. The findings of this study support the theoretical expectation that inferior competitors can coexist with superior competitors given that the inferior competitors have efficient colonization ability. The simulation also reveals the important role of agent behavior in the seed dispersal process and the biased impact of environment fragmentation on superior competitors that are not superior dispersers.     

Defoliation and nitrogen effects on photosynthesis and growth of Eucalyptus globulus

Plant responses to defoliation are complex. We established a field experiment in a nine-month-old Eucalyptus globulus Labill. plantation to examine the effects of pattern (upper crown versus lower crown removal), frequency (single, double or triple defoliation within a 12-month period) and severity (25 versus 38% of leaf area removed) of defoliation and the effect of soil nitrogen (N) on photosynthetic processes and stem growth. The photosynthetic responses observed following defoliation could be attributed to changes in source:sink ratios. Light-saturated CO(2) uptake (A(max)) increased with increasing severity and frequency of defoliation irrespective of defoliation pattern. Seedlings defoliated in autumn did not exhibit increases in A(max) until the following spring, whereas there was no such delay in photosynthetic responses associated with spring defoliation. Application of N before defoliation allowed trees to compensate for the effect of defoliation on stem diameter growth, which could not be explained simply in terms of increases in A(max). The observed increases in stem diameter increment following N fertilization of defoliated trees suggested increases in leaf area development, and there were changes in the leaf area:leaf dry mass ratio that may have increased light absorption by the crown. Nitrogen fertilization also increased partitioning of dry mass to branches at the expense of main stems, suggesting that N supply was important in rebuilding crowns following a defoliation event.     

Spinning performance and antibacterial activity of SeaCell® active/cotton blended rotor yarns

Microorganisms can lead to functional, hygienic and aesthetic (e.g. deterioration, staining) problems on textile products. Natural fibers especially cotton are more easily affected by microorganisms. Blending of cotton fibers with antimicrobial fibers can enhance the protective properties of products against microorganisms. Demand of antimicrobial performance from the products changes depending on the application area. Therefore determination of suitable antimicrobial fiber quantity for the desired application is important. In this study the spinning performance of SeaCell Active/cotton blended open end rotor yarns and antibacterial activities of fabrics produced by these blended yarns were investigated. Five different cotton/SeaCell Active blended slivers with SeaCell Active content from 3 % up to 53 % were prepared on drawframe machine and all slivers were spun into yarns on open end rotor spinning machine at a yarn count of 20 tex with α_Tt=3827 twist coefficient. The effects of rotor speed, opening roller speed, rotor, opening roller and navel type on the quality parameters of SeaCell Active/cotton blended yarns were investigated. Tensile properties, hairiness, unevenness and IPI values of the yarns were reported. All types of cotton/SeaCell Active blended yarns were knitted on a circular knitting machine. Antibacterial activity of the fabrics was analyzed quantitatively. Antibacterial tests showed that good antibacterial activity can be achieved after several washings even with 3 % of SeaCell Active fibers in fabrics.     

Influence of chemical and biological treatments on volatile oil composition of Artemisia annua Linn.

The relative abundance of isoprenoids and other volatile components in the aerial parts of Artemisia annua Linn. (Asteraceae) after different nutritional treatments was analyzed by GC and GC/MS. Hydro-distillation of untreated (control) plants yielded 0.28 ± 0.04% essential oil on fresh weight basis. Monoterpenes were predominant in the essential oil of which cis-limonene-1,2-epoxide (22.1%), artemisia ketone (11.5%), iso-pinocamphone (11.4%), thujyl alcohol (9.9%) and camphor (8.4%) were the major components. The essential oil distilled from A. annua treated with Azospirillum (2 ml/plant) amounted to 0.30 ± 0.03% of fresh weight and consisted mainly of neral (31.1%), β-caryophyllene (25.1%), artemisia ketone (10.0%), thujyl alcohol (9.4%), trans-bergamotene (8.5%) and spathulenol (4.8%). The essential oil from plants treated with basal N, P, K and S application (in the form of urea P₂O₅, K₂O and gypsum at a rate of 120, 50, 100 and 50 kg/ha, respectively) amounted to 0.32 ± 0.03% of fresh weight and consisted mainly of thujyl alcohol (33.3%), β-caryophyllene (15.5%), cis-undec-5-ene (14.4%), artemisia ketone (6.0%), trans-nerolidol (5.8%) and undec-4-ene (4.6%). The hydrodistillation of A. annua treated with Glomus (Mycorrhizal soil 50 g/plant) yielded 0.50 ± 0.02% essential oil on fresh weight basis. The sesquiterpenes were predominant in this essential oil and consisted of β-caryophyllene (51.2%), trans-bergamotene (15.4%), α-gurjunene (14.3%), germacrene D (5.1%) and ledol (4.5%) as major components. The only monoterpenes in the essential oil were neral, nerol and pulegone (each less than 1%). These findings suggest that A. annua treated with Glomus lacks glandular trichomes—the primary sites of synthesis of monoterpenes.