Assignment testing reveals multiple introduced source populations including potential ash hybrids (Fraxinus excelsior × F. angustifolia) in Ireland

Large-scale reforestation programmes are a major source of unwarranted gene flow and can have profound consequences on local genetic diversity. Recently, ash has been introduced to Ireland from continental Europe to stock plantations but has often exhibited poor stem form. It was not known whether these trees were Fraxinus excelsior, Fraxinus angustifolia or interspecific hybrids that are known to occur in continental Europe. F. excelsior is the only native ash in Ireland, so the introduced populations represent a potential threat for the genetic diversity of native populations. We characterized the introduced trees within two plantations (Clonee and Kildalkey) using morphological characters and six microsatellite markers. Samples from continental Europe were included for comparison. Plantations exhibited higher genetic diversity than control populations because our data suggest they contain a mixture of several provenances. There was a small but significant differentiation between plantations and control populations (Ф_CT = 0.0211). Bayesian analysis to infer population structure and to assign introduced individuals to reference populations clearly demonstrated the presence of hybrid individuals within the plantations. The percentage of trees detected with potential hybrid origin ranged from 28 to 58 % depending on the plantation and the threshold data analysis level chosen. Most hybrids could be considered cryptic because there was a lack of intermediate morphology for hybrid individuals that mainly clustered with F. excelsior. The results indicated that the source of material at the two plantation sites differed. Management options to minimize the impact of these introduced populations are discussed.     

The role of grazing in creating suitable sward structures for breeding waders in agricultural landscapes

French wet grasslands support important populations of lapwings and other waders. Grazing management is a key issue in the use of grasslands by these birds since they are very sensitive to sward structure (height and heterogeneity). To assess the impact of different grazing regimes on sward structure during spring, sward height was repeatedly measured in a coastal marsh for 2 years. Sward structure was characterised by variables related to height classes and an index of heterogeneity. Grazing regimes were described by stocking rates per period and N fertilisation level. Heterogeneity index was quadratically related to mean sward height both years. Four types of sward structures were characterised through principal component analysis. Co-inertia analysis showed a strong relationship between grazing regimes and sward structure. However, during spring, the relationship between stocking rate and sward structure differed according to year, impact of grazing being greater during drought year. Suitable sward structures were observed for both lapwings and redshanks. Wader habitat management through grazing calls for more attention to be paid to the delayed effects of autumn and winter grazing regimes. Sward heterogeneity emerges as a new characteristic to control, because it may introduce new constraints for livestock production.     

THE USE OF SODIUM METABISULPHITE IN SILAGE MAKING

Three trials in which metabisulphite was used as a silage additive are described and the results discussed.
The data from two small-scale trials suggests that metabisulphite and molasses each have a similar effect on the quality of the silage produced, and that wilting appeared to be more effective than either of these two additives.
A comparison of silages in two large-scale trials indicates the necessity for uniform distribution of the metabisulphite.     

Variation among seven genotypes of Lycopersicon esculentum and 36 accessions of L. hirsutum for interspecific crossability

To improve the efficiency of introgressing genes from Lycopersicon hirsutum (H) into L. esculentum (E), environmental and genetic variation for the number of progeny per fruit from E × H crosses was quantified. Over three dates in a year, 36 H accessions were crossed to seven E accessions in a greenhouse. The proportion of total variation for the number of E × H progeny per fruit due to environment (dates, location, and error), H accession, E accession, interactions between E and H, and interactions between accessions and environments was 0.42, 0.26, 0.12, 0.11, and 0.09, respectively. Sampling greater numbers of fruit on a single date improved the efficiency of recovering progeny more than increased sampling over time. The specific combination of E and H parents can profoundly affect the number of E × H progeny recovered and therefore the efficiency of gene introgression. Accessions of H from the southern edge of the species' natural geographic range generally yielded few to zero progeny per fruit in crosses with E. In contrast to the southern H accessions, most northern accessions produced greater than 40 E × H progeny per fruit. Most genes within H should be readily accessible for tomato breeding but genes that are found only in southern H accessions may be challenging to introgress. This revised version was published online in July 2006 with corrections to the Cover Date.     

User-friendly extraction and multistage tandem mass spectrometry based analysis of lipid-linked oligosaccharides in microalgae

Background

Protein N-glycosylation is initiated within the endoplasmic reticulum through the synthesis of a lipid-linked oligosaccharides (LLO) precursor. This precursor is then transferred en bloc on neo-synthesized proteins through the action of the oligosaccharyltransferase giving birth to glycoproteins. The N-linked glycans bore by the glycoproteins are then processed into oligomannosides prior to the exit of the glycoproteins from the endoplasmic reticulum and its entrance into the Golgi apparatus. In this compartment, the N-linked glycans are further maturated in complex type N-glycans. This process has been well studied in a lot of eukaryotes including higher plants. In contrast, little information regarding the LLO precursor and synthesis of N-linked glycans is available in microalgae.

Methods

In this report, a user-friendly extraction method combining microsomal enrichment and solvent extractions followed by purification steps is described. This strategy is aiming to extract LLO precursor from microalgae. Then, the oligosaccharide moiety released from the extracted LLO were analyzed by multistage tandem mass spectrometry in two models of microalgae namely the green microalgae, Chlamydomonas reinhardtii and the diatom, Phaeodactylum tricornutum.

Results

The validity of the developed method was confirmed by the analysis of the oligosaccharide structures released from the LLO of two xylosyltransferase mutants of C. reinhardtii confirming that this green microalga synthesizes a linear Glc₃Man₅GlcNAc₂ identical to the one of the wild-type cells. In contrast, the analysis of the oligosaccharide released from the LLO of the diatom P. tricornutum demonstrated for the first time a Glc₂Man₉GlcNAc₂ structure.

Conclusion

The method described in this article allows the fast, non-radioactive and reliable multistage tandem mass spectrometry characterization of oligosaccharides released from LLO of microalgae including the ones belonging to the Phaeodactylaceae and Chlorophyceae classes, respectively. The method is fully adaptable for extracting and characterizing the LLO oligosaccharide moiety from microalgae belonging to other phyla.

     

Space geodetic observations of nazca-south america convergence across the central andes

Space geodetic data recorded rates and directions of motion across the convergent boundary zone between the oceanic Nazca and continental South American plates in Peru and Bolivia. Roughly half of the overall convergence, about 30 to 40 millimeters per year, accumulated on the locked plate interface and can be released in future earthquakes. About 10 to 15 millimeters per year of crustal shortening occurred inland at the sub-Andean foreland fold and thrust belt, indicating that the Andes are continuing to build. Little (5 to 10 millimeters per year) along-trench motion of coastal forearc slivers was observed, despite the oblique convergence.     

Cytologic and histologic features of a poorly differentiated glioma in a dog

A 5-year old female Boxer with a 1-week history of progressive paresis and paraplegia had a T10-13 subarachnoid filling defect on myelography. Exploratory hemilaminectomy revealed an intramedullary spinal cord tumor which was subsequently diagnosed as a poorly differentiated glioma, most likely an anaplastic ependymoma. The cytologic, histologic, and immunocytochemical staining characteristics of this neoplasm are described. Differential diagnoses, including primary and secondary tumors involving the central nervous system are discussed.     

Detection and estimation of Citrus Tristeza Virus infection rates based on Elisa Assays of packing house fruit samples

Enzyme-linked immunosorbent assay (ELISA) proved to be a sensitive detector for citrus tristeza virus (CTV) in orange fruits (Citrus sinensis (L.) Osbeck). Samples of five fruits were taken from 350-kg packing house containers and tested by ELISA to predict the infection rate of CTV in two infected orange groves. The predicted infection rates, 1% and 11%, were in reasonable agreement with the observed rates of 1% (15/1400) and 16% (324/2053), respectively. The 360 test samples from reputedly uninfected groves all tested negative. These results suggest that the ELISA procedure may provide a general method of detecting viral or other systemic pathogenic infections using the fruit as the test material in place of tree tissue. Fruit samples can be collected routinely at the packing house to reduce test costs.     

Kinetics of Uptake and Metabolism of Atrazine in Model Plant Systems

The present work concerns atrazine absorption and metabolism by corn (Zea mays.) seedlings immersed in an aqueous medium in comparison with Acer pseudoplatanus cell cultures. At the point of equilibrium, the apparent concentration inside the A. pseudoplatanus cells (with a moderate lipid content: 0·17% of dry weight) was about twice that of the medium. This equilibrium was probably due to a simple partition process; part of the atrazine was dissolved in the cell water and reached the same concentration as in the external medium while the rest was concentrated inside the cellular lipids. The theoretical calculation of the lipid/water partition, taking into account the value of log P measured not with the lipids but with octanol (log P=2·5), gave a value of 1·5 for concentration inside the plant material. Such an equilibrium, resulting from a partition process between water and lipids, was also obtained in non-living corn seedlings. In living seedlings, an over-concentration of radioactivity due to [¹⁴C]atrazine derivatives was rapidly obtained inside roots and shoots giving concentrations respectively 7- and 12-fold higher than that of atrazine in the external medium. This was due to very rapid chemical transformation of atrazine into its hydroxy derivatives, especially hydroxyatrazine. This hydrolysis of atrazine in corn was due to the presence of high levels of benzoxazinone derivatives in corn seedling cells. The hydroxylated metabolites were able to concentrate in the cells very rapidly and were unable to diffuse freely into the external medium. As a consequence, this process facilitated the penetration of large quantities of atrazine which became rapidly hydroxylated, allowing therefore the passive penetration of atrazine to be further improved, since the concentration C₁ in the receiver compartment was always close to zero. The passive transfer of atrazine, following Fick's law: dq/dt=-Pa (C₀–C₁), was therefore optimized. © 1997 SCI.