Interactions between Escherichia coli and allophane—II. Metabolism

A purified allophane clay fraction increased the respiration of Escherichia coli (ATCC 11303B) by buffering the suspension against decreases in pH. Allophane had no significant effect on respiration in the presence of 0.02 M phosphate buffer. When E. coli was exposed to pH values below 5.0 in the presence of allophane, allophane supernatant (which contains soluble Al), or soluble Al. toxicity was evident even after raising the pH to 7.0.     

Ontology-based simulation of water flow in organic soils applied to Florida sugarcane

An ontology-based simulation (OntoSim) is a unique data modeling environment where soil–plant-nutrient processes are represented as database objects and the user-defined relationships among objects are used to generate computer code (Java) for running the simulation. The aim of this study was to model hydrologic processes of sugarcane-grown organic soils utilizing OntoSim in the Everglades Agricultural Area (EAA) of South Florida. This OntoSim-Sugarcane model describes the complex hydrology of sub-irrigation and open ditch drainage commonly used on Florida farms.Model calibration was conducted by (i) selecting rectangular farm water management units (<12 ha), which are encompassed with farm ditches, from two farms in the EAA, (ii) assembling all relevant input data including water tables (WT) recorded at the monitoring farm well of each unit, and (iii) optimizing the fits between the simulated and observed daily WT during two consecutive water years (WY). By calibrating two site-specific parameters – lateral saturated hydraulic conductivities of soil profiles and vertical saturated hydraulic conductivity of the underlying limestone bedrock – good agreement between simulated and observed daily WT was obtained (Nash–Sutcliffe efficiency coefficient >0.65; coefficient of residual mass <1%) within the units during WY96–97 (May 1995–April 1997). The validation of the model during subsequent WY98–99 at both units also showed Nash–Sutcliffe efficiency >0.55 and coefficient of residual mass <3%. It indicated that OntoSim-Sugarcane is able to simulate daily fluctuations of WT within the farm units and estimate lateral drainage/sub-irrigation and deep seepage that significantly contribute to the water balance at farms in the EAA. Thus, it can be a promising management tool to provide farmers with accurate assessment of water movement in this agricultural area.     

Climate change and the future for coral reef fishes

Climate change will impact coral-reef fishes through effects on individual performance, trophic linkages, recruitment dynamics, population connectivity and other ecosystem processes. The most immediate impacts will be a loss of diversity and changes to fish community composition as a result of coral bleaching. Coral-dependent fishes suffer the most rapid population declines as coral is lost; however, many other species will exhibit long-term declines due to loss of settlement habitat and erosion of habitat structural complexity. Increased ocean temperature will affect the physiological performance and behaviour of coral reef fishes, especially during their early life history. Small temperature increases might favour larval development, but this could be counteracted by negative effects on adult reproduction. Already variable recruitment will become even more unpredictable. This will make optimal harvest strategies for coral reef fisheries more difficult to determine and populations more susceptible to overfishing. A substantial number of species could exhibit range shifts, with implications for extinction risk of small-range species near the margins of reef development. There are critical gaps in our knowledge of how climate change will affect tropical marine fishes. Predictions are often based on temperate examples, which may be inappropriate for tropical species. Improved projections of how ocean currents and primary productivity will change are needed to better predict how reef fish population dynamics and connectivity patterns will change. Finally, the potential for adaptation to climate change needs more attention. Many coral reef fishes have geographical ranges spanning a wide temperature gradient and some have short generation times. These characteristics are conducive to acclimation or local adaptation to climate change and provide hope that the more resilient species will persist if immediate action is taken to stabilize Earth's climate.     

Fisher accessibility and habitat complexity influence the distribution of adult Cherax cainii (Decapoda: Parastacidae) in a water supply reservoir

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Sheep scab outbreaks in Great Britain between 1973 and 1992: spatial and temporal patterns.

In January 1973, the mange mite Psoroptes ovis was found in a sheep flock in Lancashire, UK after a 20 year period of eradication. Over the next 20 years, a total of 1480 flock outbreaks were reported, until June 1992 when the control of sheep scab was deregulated. The spatial and temporal patterns of the number of outbreaks in each month over this period were analysed using time series methods, a geographical information system (GIS) and second order approaches to the exploration of space-time interaction (K-function analysis). The monthly time series displays clear evidence of seasonal cyclicity, with most outbreaks being reported in the winter months. After removal of the summer compulsory dip in 1988 however, there is evidence of a change in the seasonal pattern, with more cases being reported in the autumn months. There is also evidence of a contribution from a sinusoidal wave with a period of 8 years, which roughly corresponds to the major changes in the national control policy. The spatial pattern also appears to expand and contract on a roughly 4 year cycle, again reflecting the oscillating periods of success and failure. Examination of the spatial and temporal pattern revealed strong evidence of space-time clustering (p < 0.001) and a major contribution to the pattern from very local (< 12 km) spread within 5 months of an arbitrary outbreak.     

Within-flock transmission of sheep scab in naive sheep housed with single infested sheep.

The within flock transmission of sheep scab was studied in two trials, which lasted 14 and 12 weeks, respectively. A total of 40 non-infested, scab-naive sheep were divided into six groups of between 6 and 20 individuals. Each group was subsequently housed with a single infested index case, carrying scab lesions of different ages. The groups of sheep in both trials were video recorded continuously and all the sheep were individually examined on a weekly basis. The occurrence of transmission was measured in two ways: first, by the detection of early scab lesions during clinical examination and, second, by an increase in the rubbing of individual sheep as noted from the analysis of the video recordings. These two methods complemented each other in predicting the week on which transmission occurred. Overall, transmission was detected in 34 of the 40 scab-naive sheep. Transmission was shown to occur at about the time when the population of adult mites in lesions on index cases reached their peak numbers. The highest number of mites at this time, however, differed markedly between index sheep. There was no obvious relationship between the incidence of transmission and the time index sheep spent rubbing each day or other index sheep variables, including the age of the lesion or the time since the introduction to the scab free sheep.