Molecular identification of chlamydial cause of abortion in small ruminants in Jordan

Chlamydophila abortus (Ch. abortus) is the etiological agent of ovine enzootic abortion (OEA) and one of the most common infectious agents of abortion in small ruminants worldwide. RFLP-PCR analysis of the outer membrane protein gene (OMP2 gene) was used for diagnosis and characterization of chlamydial causes of abortion in small ruminants in Jordan. Sixty-six placental tissues and 15 vaginal swabs were collected from aborted ewes and does to identify cause of abortion in Jordan. Thirty-eight placental samples (58 %) and 13 vaginal swabs (87 %) were positive for chlamydial DNA. Shedding of bacteria in vaginal swabs was detected within 7 days after abortion. The results of this study showed that chlamydiosis is one of the important causes of abortion in small ruminants in Jordan. In addition, vaginal swab is an excellent sample for molecular diagnosis of chlamydiosis. DNA sequencing and RFLP analysis of the OMP2 reveal that all chlamydial cause of abortion in small ruminants in Jordan are due to Ch. abortus. While, Ch. pecorum was not detected in any sample. OMP2 gene of the isolated Jordanian strain was identical (100 %) to Ch. abortus FAS strain. In conclusion, Ch. abortus is an important cause of abortion in Jordan; vaginal swab within 7 days of abortion can be used for molecular diagnosis of chlamydiosis in small ruminants.     

Association of a novel SNP in exon 10 of the IGF2 gene with growth traits in Egyptian water buffalo (Bubalus bubalis)

Insulin-like growth factor 2 (IGF2) plays an important role in muscle growth and it might be used as a marker for the growth traits selection strategies in farm animals. The objectives of this study were to detect polymorphisms in exon 10 of IGF2 and to determine associations between these polymorphisms and growth traits in Egyptian water buffalo. PCR-single-strand conformation polymorphism (SSCP) and DNA sequencing methods were used to detect any prospective polymorphism. A novel single nucleotide polymorphism (SNP), C287A, was detected. It was a non-synonymous mutation and led to replacement of glutamine (Q) amino acid (aa) by histidine (H) aa. Three different SSCP patterns were observed: AA, AC, and CC, with frequencies of 0.540, 0.325, and 0.135, respectively. Association analyses revealed that the AA individuals had a higher average daily gain (ADG) than other individuals (CC and AC) from birth to 9 months of age. We conclude that the AA genotype in C287A SNP in the exon 10 of the IGF2 gene is associated with the ADG during the age from birth to 9 months and could be used as a potential genetic marker for selection of growth traits in Egyptian buffalo.     

Screening techniques and sources of resistance to foliar diseases caused by major necrotrophic fungi in grain legumes

Summary Necrotrophic pathogens of the cool season food legumes (pea, lentil, chickpea, faba bean and lupin) cause wide spread disease and severe crop losses throughout the world. Environmental conditions play an important role in the development and spread of these diseases. Form of inoculum, inoculum concentration and physiological plant growth stage all affect the degree of infection and the amount of crop loss. Measures to control these diseases have relied on identification of resistant germplasm and development of resistant varieties through screening in the field and in controlled environments. Procedures for screening and scoring germplasm and breeding lines for resistance have lacked uniformity among the various programs worldwide. However, this review highlights the most consistent screening and scoring procedures that are simple to use and provide reliable results. Sources of resistance to the major necrotrophic fungi are summarized for each of the cool season food legumes. Marker-assisted selection is underway for Ascochyta blight of pea, lentil and chickpea, and Phomopsis blight of lupin. Other measures such as fungicidal control and cultural control are also reviewed. The emerging genomic information on the model legume, Medicago truncatula, which has various degrees of genetic synteny with the cool season food legumes, has promise for identification of closely linked markers for resistance genes and possibly for eventual map-based cloning of resistance genes. Durable resistance to the necrotrophic pathogens is a common goal of cool season food legume breeders.     

Investigations on the breeding behaviour of aneuploids of guava

Summary The breeding behaviour of aneuploids of guava (Psidium guajava L.) such as trisomic, tetrasomic, and higher aneuploids has been studied. Reciprocal crosses between aneuploids and diploids indicated less than 100% crossability. The aneuploids when used as male parents crossed less frequently than as female parents and certain aneuploids crossed more readily than others. Differences were observed in fruit size, fruit weight, and seed number in the reciprocal crosses.The extra chromosome was found to be transmitted through both the egg cell and the pollen. However, the frequency of transmission was greater through the egg cell than the pollen. As high as 26% transmission of extra chromosomes were obtained through the egg cell. There was no clear cut difference between trisomics and higher aneuploids with regard to the frequency of transmission of extra chromosomes.     

Compounds Identified from Marine Mangrove Plant (Avicennia alba) as Potential Antiviral Drug Candidates against WDSV,an In-Silico Approach

Walleye dermal sarcoma virus (WDSV) is a type of retrovirus, which affects most of the adult walleye fishes during the spawning time. The virus causes multiple epithelial tumors on the fish’s skin and fins that are liable for more than 50% of the mortality rate of fish around the world. Till now, no effective antiviral drug or vaccine candidates have been developed that can block the progression of the disease caused by the pathogen. It was found that the 582-amino-acid (aa) residues long internal structural gag polyprotein of the virus plays an important role in virus budding and virion maturation outside of the cell. Inhibition of the protein can block the budding and virion maturation process and can be developed as an antiviral drug candidate against the virus. Therefore, the study aimed to identify potential natural antiviral drug candidates from the tropical mangrove marine plant Avicennia alba, which will be able to block the budding and virion maturation process by inhibiting the activity of the gag protein of the virus. Initially, a homology modeling approach was applied to identify the 3D structure, followed by refinement and validation of the protein. The refined protein structures were then utilized for molecular docking simulation. Eleven phytochemical compounds have been isolated from the marine plant and docked against the virus gag polyprotein. Three compounds, namely Friedlein (CID244297), Phytosterols (CID12303662), and 1-Triacontanol ({"type":"entrez-protein","attrs":{"text":"CID68972","term_id":"813536909"}}CID68972) have been selected based on their docking score −8.5 kcal/mol, −8.0 kcal/mol and −7.9 kcal/mol, respectively, and were evaluated through ADME (Absorption, Distribution, Metabolism and Excretion), and toxicity properties. Finally, molecular dynamics (MD) simulation was applied to confirm the binding stability of the protein-ligands complex structure. The ADME and toxicity analysis reveal the efficacy and non-toxic properties of the compounds, where MD simulation confirmed the binding stability of the selected three compounds with the targeted protein. This computational study revealed the virtuous value of the selected three compounds against the targeted gag polyprotein and will be effective and promising antiviral candidates against the pathogen in a significant and worthwhile manner. Although in vitro and in vivo study is required for further evaluation of the compounds against the targeted protein.     

Influence of Progesterone Withdrawal on Pregnancy-Related Parameters During Post-Implantation Early Pregnancy Loss

Pharmacologically-induced luteolysis or treatment with an antiprogestin in early post-implantation pregnancy in dogs results in asynchronous death and resorption of conceptuses, indicating variable rates of response of individual conceptuses towards progesterone deficiency. This variability also seems to occur in bitches showing pregnancy failure in response to spontaneous luteal deficiency. In a total of 10 beagle pregnancies (two consecutive pregnancies of five bitches), abortifacient treatments beginning on day 24 after ovulation (ov) involved either administration of a progestin antagonist (total of six pregnancies, in three bitches) or a luteolytic regimen of prostaglandin F_2α-analogue together with a dopamine agonist (total of four pregnancies, in two bitches). The outcomes were evaluated in relation to four control pregnancies in two bitches by assay of serum progesterone, prolactin and relaxin at selected time points or within selected time periods, by ultrasound of conceptuses including measurement of uterine blood flow, and parameters of the blood fibrinolytic system including plasma fibrinogen and plasminogen. The process of embryonic death and conceptus resorption was variable in onset and duration both in bitches that received the progesterone antagonist aglepristone (AGLE) and in those under the luteolytic treatment (cloprostenol combined with cabergoline). Pregnancy termination (death of all embryos or foetuses, respectively) occurred as early as day 29 and as late as day 41 after ov in AGLE-treated bitches, and not earlier than day 37 after ov in luteolytic-treatment bitches. Impending embryonic death was not predicted by changes in relaxin concentration, parameters of the fibrinolytic system, or in the perfusion of small uteroplacental vessels.     

Landscape analysis of plant diversity

Studies to identify gaps in the protection of habitat for speciesof concern have been inconclusive and hampered by single-scale orpoor multi-scale sampling methods, large minimum mapping units(MMU's of 2 ha to 100 ha), limited and subjectively selected fieldobservations, and poor mathematical and ecological models. Weovercome these obstacles with improved multi-scale samplingtechniques, smaller MMU's (< 0.02 ha), an unbiased sampling designbased on double sampling, improved mathematical models includingspecies-area curves corrected for habitat heterogeneity, andgeographic information system-based ecological models. We applythis landscape analysis approach to address resource issues inRocky Mountain National Park, Colorado. Specifically, we quantifythe effects of elk grazing on plant diversity, identify areas ofhigh or unique plant diversity needing increased protection, andevaluate the patterns of non-native plant species on thelandscape.Double sampling techniques use satellite imagery,aerial photography, and field data to stratify homogeneous andheterogeneous units and keystone ecosystems (ecosystems thatcontain or support a high number of species or have distinctivespecies compositions). We show how a multi-scale vegetationsampling design, species-area curves, analyses of within- andbetween-vegetation type species overlap, and geographic informationsystem (GIS) models can be used to quantify landscape-scalepatterns of vascular plant diversity in the Park.The new multi-scale vegetation plot techniques quickly differentiated plantspecies differences in paired study sites. Three plots in the OuzelBurn area (burned in 1978) contained 75 plant species, while only17 plant species were found in paired plots outside the burn.Riparian areas contained 109 plant species, compared to just 55species in paired plots in adjacent forests. However, plant speciesrichness patterns inside and outside elk exclosures were morecomplex. One elk exclosure contained more species than its adjacentopen range (52 species inside and 48 species outside). Two elkexclosures contained fewer species inside than outside (105 and 41species inside and 112 and 74 species outside, respectively).However, there was only 26% to 48% overlap (using Jaccard'sCoefficient) of plant species composition inside and outside theexclosures. One elk exclosure had 13% cover of non-indigenousspecies inside the exclosure compared to 4% outside, butnon-indigenous species cover varied by location.We compared plantdiversity patterns from vegetation maps made with 100 ha, 50 ha, 2ha, and 0.02 ha MMU's in the 754 ha Beaver Meadows study area usingfour 0.025 ha and twenty-one 0.1 ha multi-scale vegetation plots.Preliminary data suggested that the 2 ha MMU provided an accurateestimate of the number of plant species (–14%) for a study area,but the number of habitats (polygons) was reduced by 67%, andaspen, a unique and important habitat type, was missed entirely. Wedescribe a hypothesis-driven approach to the design andimplementation of geospatial databases for local resourcemonitoring and ecosystem management.