Genetic diversity of the root‐knot nematode Meloidogyne enterolobii and development of a SCAR marker for this guava‐damaging species

The objectives of this work were to evaluate the genetic variability of Meloidogyne enterolobii by molecular markers, and develop species‐specific molecular markers for application in detection. Sixteen M. enterolobii isolates from different geographical regions (Brazil and other countries) and hosts were used in this study. The identification and purification of the populations were carried out based on isoenzyme phenotype. The DNA amplification of the intergenic region (IGS) of the rDNA and of the region between the cytochrome oxidase subunit II (COII) and 16S rRNA genes (mtDNA) produced specific fragments of the expected size for this nematode, i.e. 780 and 705 bp, respectively. Intraspecific variability among the isolates was evaluated with three different neutral molecular markers: AFLP, ISSR and RAPD. The results showed a low level of diversity among the isolates tested, indicating that M. enterolobii is a genetically homogeneous root‐knot nematode species. The RAPD method allowed the identification of a species‐specific RAPD fragment for M. enterolobii. This fragment was cloned and sequenced, and from the sequence obtained, a set of primers was designed and tested. The amplification of a 520‐bp‐long fragment occurred only for the 16 isolates of M. enterolobii and not for the 10 other Meloidogyne species tested. In addition, positive detection was achieved in a single individual female, egg‐mass and second stage juvenile of this nematode. This SCAR species‐specific marker for M. enterolobii represents a new molecular tool to be used in the detection of this nematode from field samples and as a routine diagnostic test for quarantine devices .     

The Warrumbungle Post‐Fire Recovery Project—raising the profile of soils

The impacts of a wildfire and subsequent rainfall event in 2013 in the Warrumbungle National Park in New South Wales, Australia were examined in a project designed to provide information on post‐fire recovery expectations and options to land managers. A coherent suite of sub‐projects was implemented, including soil mapping, and studies on soil organic carbon (SOC) and nitrogen (N), erosion rates, groundcover recovery and stream responses. It was found that the loss of SOC and N increased with fire severity, with the greatest losses from severely burnt sandstone ridges. Approximately 2.4 million t of SOC and ~74,000 t of N were lost from soil to a depth of 10 cm across the 56,290 ha affected. Soil loss from slopes during the subsequent rainfall event was modelled up to 25 t ha^?1, compared to a long‐term mean annual soil loss of 1.06 t ha^?1 year^?1. Groundcover averages generally increased after the fire until spring 2015, by which time rates of soil loss returned to near pre‐fire levels. Streams were filled with sand to bank full levels after the fire and rainfall. Rainfall events in 2015–2016 shifted creek systems into a major erosive phase, with incision through the post‐fire sandy bedload deposits, an erosive phase likely related to loss of topsoils over much of the catchment. The effectiveness of the research was secured by a close engagement with park managers in issue identification and a communications programme. Management outcomes flowing from the research included installation of erosion control works, redesign of access and monitoring of key mass movement hazard areas.     

Dietary protein requirement for juvenile mandarin fish,Siniperca scherzeri

An 8‐week feeding trial was conducted to investigate the dietary protein requirement of juvenile mandarin fish, Siniperca scherzeri, a demersal freshwater piscivore with high commercial value in East Asia. Five isolipidic (100 g/kg) and isoenergetic (20 MJ/kg) practical diets were formulated to contain graded levels of 450, 500, 550, 600, and 650 g/kg crude protein, using mackerel fishmeal as the sole source of protein. Each of the five test diets was fed to visual satiety to triplicate groups of fish (initial mean body weight ± SE; 20.1 ± 0.2 g) reared in a recirculating freshwater system over the experimental period. Fish growth performance in terms of weight gain tended to improve with increasing dietary protein level, and the highest values were observed in those fish fed the 600–650 g/kg diets. Feed intake significantly declined as the protein content of the diet increased. Feed efficiency and protein retention tended to increase with increasing dietary protein levels, from 450 to 600 g/kg, and then declined when dietary protein content further increased to 650 g/kg. A similar trend was also found for the protein efficiency ratio, although the observed changes did not reach statistical significance. Whole‐body composition and plasma biochemical parameters were not significantly affected by the dietary protein content. Based on these findings and a broken‐line model of growth, 614.4 g/kg seems to be the proper amount of protein in a practical diet for >20 g mandarin fish.     

Growth and survival of juvenile red drum,Sciaenops ocellatus,acclimated to freshwater at three different stocking densities in a partial recirculation system

Preliminary technical baseline information for the inland culture of juvenile red drum, Sciaenops ocellatus, in a freshwater fish hatchery is presented. Three initial stocking densities (d₁ = 83, d₂ = 167, and d₃ = 250 fish/m³) were tested in a semirecirculation system for 575 days using a commercially available feed (48.1% protein, 25% lipids, and 0.13% fiber). Initial and final mean fish weight were 7.11 ± 0.02 g and 287.6 ± 27 g. As carrying capacity appeared to have been reached, only data from Days 1–333 were analyzed. One‐way ANOVA analyses indicated that the survival rate of the smaller density (d₁ =40 ± 3.7%) was significantly different from the other two densities (d₃ = 21 ± 1.1% and d₂ = 23 ± 1.0%), which did not differ between them. Absolute growth rate (0.87 ± 0.02 g/day) was not significantly different between densities (F = 0.23. p = .801). Neither was weight significantly different between treatments. There were significant differences in the feed conversion rate (FCR) between densities (F = 8.54; p = .02). FCR for d₁ was significantly lower than for the two other densities, which did not differ from each other. A von Bertalanffy growth model was adjusted (R² = 0.95), and weight–length relationship presented negative allometric values (b = 2.85, R² = 0.98).     

Crude protein in low‐fish meal diets for juvenile Litopenaeus vannamei can be reduced through a well‐balanced supplementation of essential amino acids

The use of supplemental essential amino acids (EAAs) has been shown to provide an opportunity to minimize excess levels of crude protein (CP) in animal feeds. The present study investigated the effect of reducing the amount of CP in low‐fish meal diets (5%) for juvenile Litopenaeus vannamei. Four sets of diets were prepared containing (% on a fed basis, mean ± SD) 31.24 ± 0.71, 33.70 ± 0.41, 36.90 ± 0.44, and 39.63 ± 0.14% CP, with each protein level containing a total dietary methionine (Met) (Met + Cys) level of 0.56 ± 0.02 (1.07 ± 0.23), 0.71 ± 0.01 (1.22 ± 0.20), 0.88 ± 0.02 (1.38 ± 0.22), or 1.04 ± 0.02% (1.55 ± 0.18%). Shrimp of 1.00 ± 0.08 g were stocked in 84 outdoor tanks of 1 m³ at a rate of 100 shrimp/m² and raised for 75 days. Final survival ranged from 83 to 97% and was unaffected by Met content. Both survival and yield were significantly depressed when shrimp were fed the 31% CP diet. Shrimp grew at a weekly rate of between 0.79 and 0.97 g, achieving a final body weight (BW) in excess of 10.8 g. There was a significant interaction between CP and Met over BW. Shrimp fed 0.56% Met achieved the lowest BW at harvest. Increasing CP beyond 34% did not enhance BW. With a dietary Met content of 0.71%, the highest BW was achieved with 34% CP compared to other levels. There was a significant improvement in Feed Conversion Ratio (FCR) when CP was raised from 31 to 34%. Similarly, dietary Met levels above 0.71% resulted in a significantly better FCR compared to 0.56%. Our study has shown that, if dietary Met (Met + Cys) meets a minimum of 0.71% (1.22%), levels of CP could be reduced from 40 to 34% without adverse effects on shrimp performance.     

Getting cosy in freshwater: Assumed to be brackish pike are not so brackish after all

Pike (Esox lucius) occupy coastal streams and rivers of the Baltic Sea, where they attain large sizes (>5 kg). These large sizes are perhaps due to the fact that they can tolerate relatively high salinities and can thus forage in the nearby more productive brackish environments. In an attempt to quantify the extent to which pike utilise brackish environments, and to provide some insight into the underlying causes for brackish water migrations, we tagged 30 pike from a western Baltic river with acoustic transmitters and were able to track 21 individuals for 1 year. Based on experienced from local anglers, this population was assumed to be brackish in nature, where individuals underwent freshwater migrations to spawn. Our findings however suggest that the smallest and most active individuals make short exits into brackish waters and do so on rare occasions. Our results further indicate that neither sex nor size is related to activity level. We suggest that these patterns reflect two distinct behaviours—active and passive—and that large pike can be supported by the food availability in the river, without the need to venture into coastal zones, thus defying the conventional view that Baltic pike are all brackish in nature.     

Decolonising Pacific research,building Pacific research communities and developing Pacific research tools: The case of the talanoa and the faafaletui in Samoa

In building Samoan academic researcher capacity in Samoa, we argue that there is a need to first establish the kind of researcher community advocated by Linda Tuhiwai Smith, and to do so through developing research tools, such as the talanoa and faafaletui, in partnership with researcher capacity‐building initiatives such as the applied postgraduate social and health research methods course (coded PUBX731‐HSA505) run by the Centre for International Health, University of Otago, in partnership with the National University of Samoa. This paper offers a commentary on the talanoa and faafaletui as Pacific research methodologies, and asks what its value might be for researchers in Samoa. It reflects on the learning experiences of staff and students of the applied social and health research methods course in relation to the talanoa and faafaletui as Pacific research methodologies or methods. It concludes that developing Pacific research and researcher capacity in Pacific Island countries, such as Samoa, must include opening up spaces within these communities to critically engage what is Pacific or Samoan or indigenous about these research tools, methods or methodologies, and how they might differ in form or substance from other methods or methodologies.     

Development and characterization of a new set of 164 polymorphic EST‐SSR markers for diversity and breeding studies in rubber tree (Hevea brasiliensis Müll. Arg.)

Despite its economic importance and recent genome release, the need for molecular tools for Hevea brasiliensis is high. In the frame of a disease resistance study, EST sequences were retrieved from public database or generated by sequencing SSH libraries. Sequences were trimmed and microsatellite motifs searched using an ad hoc bioinformatic pipeline, and pairs of primers for the amplification of candidate markers were generated. We found a total of 10 499 unigenes from both sources of sequences, and 673 microsatellites motifs were detected using the default parameters of the pipeline. Two hundred sixty‐four primer pairs were tested and 226 (85.6%) successfully amplified. Out of the amplified candidate markers, 164 exhibited polymorphism. Relationships based on dendrograms using simple matching index and diversity statistics based on EST‐SSRs were compared with Genomic SSRs, showing the potentialities of EST‐derived microsatellites for resistance studies but also for population genetics approaches.     

Influence of land management on soil nutrients and microbial biomass in the central loess plateau,northwest China

Loss of soil organic matter under cropping systems is often considered one of the most serious forms of agriculturally induced soil degradation. Therefore, understanding how to improve or maintain soil fertility is of importance for sustainable systems of agriculture. This study deals with the effects of succession fallow and fertilization combined with crop rotation on the chemical properties and microbial biomass of soil in the central Loess Plateau, China. In order to create a more uniform experimental environment and avoid the influence of different crop residues, wheat/potato (W/P) rotation was selected as a fertilization treatment. The results showed that with increasing fallow time organic carbon (Corg) and total nitrogen (TN) slightly increased, microbial biomass carbon (MBC) and MBC/Corg gradually decreased, and microbial biomass nitrogen (MBN) remained unchanged. However, only MBC/Corg among all the microbial parameters measured showed significant differences at various stages of fallow. Although there was a decrease in organic carbon and total nitrogen in the fertilized plots, MBC was not significantly different in the various fallow and fertilized plots except for one‐year‐old fallows, which had the highest MBC. MBN, MBC/Corg and MBN/TN in fertilized plots were higher than for plots at different stages of fallow. Fertilization can increase organic carbon, total nitrogen, MBC and MBN content (compared to the control). It was concluded that appropriate land management, such as fertilization combined with crop rotation and reducing one‐year‐old fallow, would be useful ways to improve or maintain soil fertility. Copyright © 2005 John Wiley & Sons, Ltd.     

Effects of Annealing and Concentration of Calcium Salts on Thermal and Rheological Properties of Maize Starch During an Ecological Nixtamalization Process

The objective of the present work was to study the effect of annealing and concentration of Ca(OH)₂ (lime) and calcium salts on the thermal and rheological properties of maize starch during an ecological nixtamalization process. Thermal and rheological properties of maize starch changed during the ecological nixtamalization process because of three main causes: the annealing phenomenon, type of calcium salt, and calcium salt concentration. In all treatments thermal properties (T_o, T_p, and T_f) of nixtamal starch increased owing to the annealing process, whereas the type of salt or lime increased thermal properties and decreased pasting properties in this order: CaCl₂ > CaSO₄ > Ca(OH)₂ ≈ CaCO₃. This behavior was because of the dissociation of each salt or lime in water. Anions (OH⁻) can penetrate much more easily into the starch granule and start the gelatinization process by rupturing hydrogen bonds. Additionally, amylose‐lipid complexes were formed during the nixtamalization processes, as indicated by an increasing peak at 4.5 Å in X‐ray diffraction patterns.