Modeling multi-scale spatial ecological processes under the discrete event systems paradigm

A multi-scale spatial ecological model of a wet sclerophyllous forest subject to recurrent fires is presented. The model is specified in a Discrete Event Systems framework (DEVS) (Zeigler, 1990) interfaced with a Geographic Information System (GIS), and includes the ability to simulate landscape dynamics at several levels of resolution simultaneously. This is achieved by encoding a modular hierarchical representation of the forest landscape components into a set of nested, interconnected, and spatially referenced dynamic models. The results of the landscape dynamics simulations are displayed as sequences of maps through time, illustrating the potential of this modeling methodology for dealing with complex hierarchical structures that operate at several spatial and temporal resolutions.Research work supported by Junta Nacional de Investigaçäo Científica e Tecnológica, Portugal, and the Advanced Resource Technology Program, University of Arizona, USA.     

Characterization of urea–formaldehyde resin penetration into medium density fiberboard fibers

The amount of UF resin penetration into fibers, used for the production of medium density fiberboard (MDF), is unknown. To evaluate the relationship between resin viscosity and resin penetration depth, an experimental procedure involving confocal laser scanning microscopy (CLSM) and a Toluidine Blue O staining system was performed. The results indicate that CLSM in combination with a Toluidine Blue O staining system is a good way to characterize UF resin penetration into wood fibers. The main penetration direction is toward the fiber lumen. For wet fibers, whose moisture content is about 88%, the effect of resin viscosity with a range of 80 cps – 340 cps on penetration is very similar, with all adhesives reaching or almost reaching the fiber lumen after 60 min at room temperature. For MDF industrial samples, the highest depth of penetration of the adhesive was attained in the second dryer stage. After the second dryer stage, the resin penetration into the fiber did not increase.     

Metaphase-I analysis of a Triticum aestivum x T. monococcum hybrid by the C-banding technique

Summary The meiotic pairing behaviour at metaphase I of a Triticum aestivum×Triticum monococcum hybrid has been studied by means of the C-banding technique to ascertain the homology between the chromosomes in the A genome of the two species. The technique allowed the A and B genome chromosomes and the 2D, 3D and 5D chromosomes to be identified. Differences in the level of chromosome pairing in the A genome were noted. The T. monococcum 4A chromosome did not pair with any of the T. aestivum chromosomes in any of the metaphase I cells analysed. Two reciprocal translocations between the 2B and 2D chromosomes on one side and the 2A and 3D on the other side have been identified. The usefulness of the C-banding technique in the study of chromosome homology among species related to wheat is discussed.     

Marker-based screening of maize inbred lines using support vector machine regression

The phenomenon of heterosis is widely used in hybrid breeding programmes, despite the fact that no satisfactory molecular explanation is available. Estimators of quantitative genetic components like GCA and SCA values are tools used by the plant breeder to identify superior parental individuals and to search for high heterosis combinations. Obtaining these estimators usually requires the creation of new parental combinations and testing their offspring in multi-environment field trials. In this study we explore the use of ɛ-insensitive Support Vector Machine Regression (ɛ-SVR) for the prediction of GCA and SCA values from the molecular marker scores of parental inbred lines as an alternative to these field trials. Prediction accuracies are obtained by means of cross-validation on a grain maize data set from the private breeding company RAGT R2n. Results indicate that the proposed method allows the routine screening of new inbred lines despite the fact that predicting the SCA value of an untested hybrid remains problematic with the available molecular marker information and standard kernel functions. The genotypical performance of a testcross hybrid, originating from a cross between an untested inbred line and a well-known complementary tester, can be predicted with moderate to high accuracy while this cannot be said for a cross between two untested inbred lines.     

QTL mapping of a partial resistance to the corn delphacid‐transmitted viruses in Lepidopteran‐resistant maize line Mp705

A partial resistance to maize mosaic virus (MMV) and maize stripe virus (MStV) was mapped in a RILs population derived from a cross between lines MP705 (resistant) and B73 (susceptible). A genetic map constructed from 131 SSR markers spanned 1399 cM with an average distance of 9.6 cM. A total of 10 QTL were detected for resistance to MMV and MStV, using composite interval mapping. A major QTL explaining 34–41% of the phenotypic variance for early resistance to MMV was detected on chromosome 1. Another major QTL explaining up to 30% of the phenotypic variation for all traits of resistance to MStV was detected in the centromeric region of chromosome 3 (3.05 bin). After adding supplementary SSR markers, this region was found to correspond well to the one where a QTL of resistance to MStV already was located in a previous mapping study using an F₂ population derived from a cross between Rev81 and B73. These results suggested that these QTL of resistance to MStV detected on chromosome 3 could be allelic in maize genome.