A physical map of the 1-gigabase bread wheat chromosome 3B

As the staple food for 35% of the world's population, wheat is one of the most important crop species. To date, sequence-based tools to accelerate wheat improvement are lacking. As part of the international effort to sequence the 17-billion-base-pair hexaploid bread wheat genome (2n = 6x = 42 chromosomes), we constructed a bacterial artificial chromosome (BAC)-based integrated physical map of the largest chromosome, 3B, that alone is 995 megabases. A chromosome-specific BAC library was used to assemble 82% of the chromosome into 1036 contigs that were anchored with 1443 molecular markers, providing a major resource for genetic and genomic studies. This physical map establishes a template for the remaining wheat chromosomes and demonstrates the feasibility of constructing physical maps in large, complex, polyploid genomes with a chromosome-based approach.     

Impact of Macrotermes termitaria as a source of heterogeneity on tree diversity and structure in a Sudanian savannah under controlled grazing and annual prescribed fire (Burkina Faso)

Macrotermes termitaria are conspicuous features of savannah ecosystems in the Sudanian and Sahelian zones of West Africa. The mounds, alive or abandoned, are a major source of heterogeneity in the landscape. The purpose of the present study was to assess the impact of termitaria on tree community in a state forest of the Sudanian regional centre (Tiogo forest, Burkina Faso), under controlled burning and grazing experiments. A comparative inventory was carried out in a split-plot experiment (16 subplots of 2500 m²): 8 subplots where fire regime and grazing were controlled and 8 subplots exposed to grazing and with annual prescribed fire since 1992. All tree individuals (≥1.5 m) were recorded, both on termitaria and outside and their basal area at stump level was measured. A total of 61 observed (or 65.7 ± 2.4 estimated) tree species were recorded on 28 Macrotermes subhyalinus mounds (54 observed species or 60.8 ± 3.3 estimated), the immediate surroundings (44 observed and 59.0 ± 0.0 estimated species) and the rest of subplots (56 observed and 63.6 ± 0.0 estimated). Specific density was higher on mounds in comparison with the surroundings (P < 0.05). Results showed that termitaria played a key role in maintaining higher species diversity as compared to their surroundings (P < 0.05). Differences in species diversity between termitaria and immediate surroundings appeared more pronounced in disturbed plots (submitted to both fire and grazing). Some species, such as Tamarindus indica, Boscia senegalensis, Cadaba farinosa, Capparis sepiaria and Maerua angolensis are found solely on termitaria. Besides, the density of trees was significantly higher on termitaria compared to the surrounding (P < 0.05), as well as total basal area per unit of 100 m² area (P < 0.05). We concluded that Macrotermes termitaria play an important role as a source of heterogeneity in this Sudanian savannah woodland ecosystem. This role is particularly important in ecosystems under stresses. Termitaria acted as refuge for tree vegetation. The density and dynamics of M. subhyalinus termitaria should, therefore, be taken into account in the global strategy of the forest resources management and conservation.     

Airborne fungal succession in a rice field of Cuba

This study characterised the airborne mycobiota of a rice plantation in Bauta (Havana, Cuba), with a view to improving crop quality. Culturable airborne fungi were sampled between March 2007 and February 2008 using a volumetric method (SAS Super 100) with potato dextrose agar as culture medium. The total fungal count was 51,425 cfu/m³. The 39 filamentous genera identified included several major rice pathogens (Bipolaris, Curvularia, Alternaria, Pyricularia, Cercospora and Fusarium) as well as potentially mycotoxigenic species of Fusarium, Penicillium and Aspergillus. Analysis of the influence of weather-related factors on spore counts revealed that total counts and Penicillium counts correlated positively with daily relative humidity, mean temperature and dew point.     

Remote sensing and epidemiology: examples of applications for two vector-borne diseases

Remote sensing techniques have greatly contributed to improve our capacity to observe our environment and its processes. For about 15 years, the use of satellite images for epidemiological purposes has been largely promoted to determine diseases distributions and their variations through time. In some circumstances, when diseases are strongly related to environmental data such as climate, vegetation or land-use, radiation values can be included in prediction models. In other cases, remote sensing data provide information for drawing thematic layers involved in the epidemiological processes, which may differ according to the different ecotypes and ecosystems. According to its final goal, the users can choose from the panel of available radiometers with specific characteristics including spatial resolution and frequency of data. In this paper, two examples of major vector-borne diseases, namely Animal Trypanosomosis and Bluetongue, illustrate these applications.     

Assessment of PCR for routine identification of species of the Mycoplasma mycoides cluster in ruminants

DNA amplification techniques offer considerable promise for the identification of Mycoplasma mycoides cluster members. They avoid antigenic cross-reactivity and variability that hamper serological methods. Many sets of primers, specific of these different members and of Mycoplasma putrefaciens, have been proposed. To assess the reliability of some of these PCR tests in routine laboratory diagnostic use, 230 field strains supposed to belong to this group were simultaneously identified by PCR and an antigenic method. The results were well correlated to antigenic identification for M. putrefaciens, but PCR failed to identify respectively 74% and 52% of M. mycoides subsp. mycoides Large Colony type and M. capricolum subsp. capricolum strains. Any identification of M. mycoides subsp. mycoides Small Colony type must be confirmed by two different tests. Difficulties in defining the M. species bovine serogroup 7 were also encountered with both the PCR and immunological methods. The occurrence of putative variable antigen(s) on the mycoplasma surface may explain part of the identification difficulties encountered with the immunological methods.     

Differing trophic niches of three French stygobionts and their implications for conservation of endemic stygofauna

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Main stem movement of Atlantic salmon parr in response to high river temperature

Atlantic salmon become thermally stressed when water temperatures exceed 23 °C. To alleviate this stress, they behaviourally thermoregulate by moving to patches of cold water, often forming large aggregations. These patches are known as thermal refuges. Given the consensus that climate change will increase temperatures in Atlantic salmon catchments, thermal refuges will become increasingly important in minimising summer mortalities. While the behaviour of salmonids within thermal refuges is fairly well understood, less is known about their main stem movement in search of thermal refuges or its thermal and temporal cues. We detail the results of a PIT telemetry study to investigate the main stem movement behaviour of thermally stressed Atlantic salmon parr in a temperature‐impacted river. PIT antennas placed around two thermal refuges and at the upstream and downstream limits of their surrounding reach were used to record the movement of salmonids during a heatwave. We observed parr movement at the upstream and downstream antennas 135 min prior to the occurrence of the midpoint of aggregations in the thermal refuges, indicating that Atlantic salmon parr make reach‐scale movements in search of cool water prior to aggregating. Logistic regression showed that the number of degree hours >28 °C predicted the occurrence of main stem movement with a good degree of accuracy, indicating that this temperature represents a fundamental threshold causing Atlantic salmon parr to move towards cool water. Such data could be instrumental in allowing river managers to place limits on human activity within rivers, allowing salmon populations time to recover following heat stress events.     

Efficacy of fipronil, amitraz and (S)-methoprene combination spot-on for dogs against adult dog fleas (Ctenocephalides canis, Curtis, 1826)

A novel spot-on formulation combining fipronil, amitraz and (S)-methoprene (CERTIFECT?, Merial Limited, GA, USA) was evaluated in adult Beagle dogs in a study to determine its adulticidal efficacy against the dog flea (Ctenocephalides canis, Curtis, 1826). Sixteen dogs were randomly allocated to treatment groups: 8 dogs served as untreated controls, and 8 dogs were treated once. Treatment consisted of applying a new combination formulation to deliver at least 6.7mg fipronil/kg body weight (bw), 8.0mg amitraz/kg bw, and 6.0mg (S)-methoprene/kg bw. The combination was designed to enhance the efficacy against ticks of the original fipronil/(S)-methoprene combination. Each dog was infested with 100 adult unfed dog fleas within 24h prior to treatment and then at weekly intervals for 8 weeks after treatment. At 24h after treatment or after each subsequent infestation, each dog was combed thoroughly to remove live fleas to be counted. A single treatment with CERTIFECT provided excellent knock-down of fleas within 24h after treatment and controlled re-infestations for up to 7 weeks (efficacy ≥96.5%, p<0.05).