Saccharobisindole,Neoasterric Methyl Ester,and 7-Chloro-4(1H)-quinolone: Three New Compounds Isolated from the Marine Bacterium Saccharomonospora sp.

Analysis of the chemical components from the culture broth of the marine bacterium Saccharomonospora sp. CNQ-490 has yielded three novel compounds: saccharobisindole (1), neoasterric methyl ester (2), and 7-chloro-4(1H)-quinolone (3), in addition to acremonidine E (4), pinselin (5), penicitrinon A (6), and penicitrinon E (7). The chemical structures of the three novel compounds were elucidated by the interpretation of 1D, 2D nuclear magnetic resonance (NMR), and high-resolution mass spectrometry (HRMS) data. Compound 2 generated weak inhibition activity against Bacillus subtilis KCTC2441 and Staphylococcus aureus KCTC1927 at concentrations of 32 μg/mL and 64 μg/mL, respectively, whereas compounds 1 and 3 did not have any observable effects. In addition, compound 2 displayed weak anti-quorum sensing (QS) effects against S. aureus KCTC1927 and Micrococcus luteus SCO560.     

Efficacy of Netminder® silicone release coating for biofouling reduction in bay scallop grow‐out and comparative effects on scallop survival,growth and reproduction

Netminder^®, a water‐based silicone barrier release coating, was highly effective in reducing biofouling of lantern nets during grow‐out/overwintering of bay scallops, Argopecten irradians irradians, in a large‐scale restoration programme in New York, USA. Compared with untreated nets, scallops held in Netminder^®‐coated nets experienced reduced survival after 8 months, probably due to higher loads of epibionts on their shells. However, this was countered by higher reproductive and overall condition of scallops in treated vs. untreated nets; there were no consistent differences in shell growth in different net treatments. Although further testing is recommended under a wider range of conditions, we conclude that for the purposes of our scallop restoration work, coating nets with Netminder^® would eliminate the need for a gear change in spring, thus reducing labour costs; the coating process should be refined so that Velcro closures of nets do not become sealed shut.     

Isolation and characteristics of eight novel polymorphic microsatellite loci from the genome of garlic (Allium sativum L.)

Here we characterized eight novel polymorphic SSR markers, developed from an enriched genomic library of garlic (Allium sativum L.). These SSRs produced a total of 64 alleles across 90 garlic accessions, with an average of 8 alleles per locus. Values for observed (H_O) and expected (H_E) heterozygosity ranged from 0.16 to 0.77 (mean = 0.44) and from 0.22 to 0.86 (mean = 0.65), respectively. Six loci deviated significantly (P < 0.05) from Hardy–Weinberg equilibrium (HWE). The averages of gene diversity and PIC values were 0.65 and 0.62, respectively. The mean genetic similarity coefficient was 0.4380, indicating that among garlic accessions existed wide genetic variation. Based on 64 alleles obtained by 8 SSRs, a phenogram was constructed to understand the relationships among the 90 accessions. These newly developed SSRs should prove very useful tools for genotypes identification, assessment of genetic diversity and population structure in garlic.     

Estimation of irrigation return flow from paddy fields considering the soil moisture

The objective of this study was to estimate irrigation return flow in irrigated paddy fields considering the soil moisture. The proposed model was applied to examine its feasibility with regard to the growing period of rice. Simulation results showed a good agreement between the observed and simulated values: root mean square error (RMSE) of 6.05-7.27 mm day⁻¹, coefficient of determination (R²) of 0.72-0.73, and coefficient of efficiency (E) of 0.54-0.55. The estimated average annual irrigation return flow during the period from 1998 to 2001 was 306.2 mm, which was approximately 25.7% of the annual irrigation amounts. Of this annual irrigation return flow, 14.1% was attributable to quick and 11.6% to delayed return flow. These results indicate that considerable amounts of irrigation water in the paddy fields were returned to streams and canals by surface runoff and groundwater discharge. The modeling assessment method proposed in this study can be used to manage agriculture water and estimate irrigation return flow under different hydrological and water management conditions.     

Immobilization antigen-independent protection of olive flounder (Paralichthys olivaceus) against Philasterides dicentrarchi (Ciliophora: Scuticociliatia) infection

To determine whether olive flounder (Paralichthys olivaceus) immunized with lysate of Philasterides dicentrarchi could be protected immobilization antigen (i-antigen) type independently, fish were immunized with lysate of ciliates obtained from in vitro cultures or ciliates obtained from infected fish. Fish immunized with ciliates obtained from infected fish were completely protected against artificial infection with in vitro cultured P. dicentrarchi, in spite of a weak or no serum agglutination activity against in vitro cultured ciliates. The present results indicate that i-antigen-independent protection was elicited by immunization of fish with the ciliates lysate, and the cultured ciliates would provide a good source for preparation of vaccines, which are cross-protective against various i-antigen types of P. dicentrarchi.     

SNP Markers Discovery in Soybean with Use of Degenerate Oligolucleotide Primed PCR

There are several strategies that can be applied in SNP discovery, as for example the locus-specific amplification of target genome regions （Primmer et al., 2002; Van et al., 2004） or simultaneous assembly of anonymous sequences which are the product of whole genome shotgun sequencing （Webber and Myers, 1997） or reduced representation shotgun sequencing （Altshuler et al., 2000）. The majority of these methods are highly cost-prohibitive, however, and there is a necessity for development of new strategies that would be more suitable for small and medium-scale laboratories.     

Determination of chlorate and chlorite and mutagenicity of seafood treated with aqueous chlorine dioxide.

The use of chlorine dioxide (ClO(2)) as a potential substitute for aqueous chlorine to improve the quality of seafood products has not been approved by regulatory agencies due to health concerns related to the production of chlorite (ClO(2)(-)) and chlorate (ClO(3)(-)) as well as possible mutagenic/carcinogenic reaction products. Cubes of Atlantic salmon (Salmo salar) and red grouper (Epinephelus morio) were treated with 20 or 200 ppm aqueous chlorine or ClO(2) solutions for 5 min, and extracts of the treated fish cubes and test solutions were checked for mutagenicity using the Ames Salmonella/microsome assay. No mutagenic activity was detected in the treated fish samples or test solutions with ClO(2). Only the sample treated with 200 ppm chlorine showed weak mutagenic activity toward S. typhimurium TA 100. No chlorite residue was detected in sea scallops, mahi-mahi, or shrimp treated with ClO(2) at 3.9-34.9 ppm. However, low levels of chlorate residues were detected in some of the treated samples. In most cases, the increase in chlorate in treated seafood was time- and dose-related.     

Chemical Composition Change in TSP Due to Dust Storm at Gosan, Korea: Do the Concentrations of Anthropogenic Species Increase Due to Dust Storm?

Aerosol composition change between dust storm and non-dust storm periods in spring is studied using the total suspended particle data measured at Gosan, a background area in Korea. The concentrations of eight inorganic ions and 12 elements were analyzed for the TSP samples collected from March 1992 to May 2006. Two-step statistical analyses were carried out for the data: F test and t test. The concentrations of anthropogenic ionic species showed increasing trend since 2003. The absolute concentrations of most anthropogenic species such as sulfate or nitrate increased (from 7.33 to 9.25 µg m^?3 and from 2.04 to 4.84 µg m^?3, respectively) during the dust storm period. However, the enrichment factors or normalized concentrations based on Al of most anthropogenic species decreased during dust storm period (factor of 0.1–0.5). It suggests that, in general, relative importance of anthropogenic species during dust storm would be not high.     

LED-UV grafting of vinylsulfone dyes onto photo-oxidized wool fabrics

Photografting coloration of wool was carried out under UV-LED irradiation at room temperature using aqueous vinylsulfone dye solution containing vinylsulfonic acid as a comonomer. UV-LED irradiation of the 395 nm emission is more energy efficient, less damaging to the dyes, and much safer to human eyes compared with polychromatic mercury UV lamps. However, in case of the UV-LED lamps, the wool needs to be photo-oxidized either by UV/ozone or polychromatic UV irradiation before the dye photografting. The surface treatments increased the sulfur and oxygen contents in the modified wool surfaces. While the optimally photografted wool fabrics under the UV-LED lamp yielded a K/S value of 9.9, the K/S of the grafted wool increased to 25.2 and 13.6 after the UV/Ozone or polychromatic UV preoxidation at UV energies of 10.6 J/cm² and 25 J/cm² respectively. The color fastness properties of the photografted fabrics were far better than with those of the conventionally reactive-dyed fabrics, implying that the high-molecular-weight photografted dyes seemed to be more durable than the low-molecular dyes.