Genotyping of a microsatellite locus to differentiate clinical Ostreid herpesvirus 1 specimens

Ostreid herpesvirus 1 (OsHV-1) is a DNA virus belonging to the Malacoherpesviridae family from the Herpesvirales order. OsHV-1 has been associated with mortality outbreaks in different bivalve species including the Pacific cupped oyster, Crassostrea gigas. Since 2008, massive mortality events have been reported among C. gigas in Europe in relation to the detection of a variant of OsHV-1, called μVar. Since 2009, this variant has been mainly detected in France. These results raise questions about the emergence and the virulence of this variant. The search for association between specific virus genetic markers and clinical symptoms is of great interest and the characterization of the genetic variability of OsHV-1 specimens is an area of growing interest. Determination of nucleotide sequences of PCR-amplified virus DNA fragments has already been used to characterize OsHV-1 specimens and virus variants have thus been described. However, the virus DNA sequencing approach is time-consuming in the high-scale format. Identification and genotyping of highly polymorphic microsatellite loci appear as a suitable approach. The main objective of the present study was the development of a genotyping method in order to characterise clinical OsHV-1 specimens by targeting a particular microsatellite locus located in the ORF4 area. Genotyping results were compared to sequences already available. An excellent correlation was found between the detected genotypes and the corresponding sequences showing that the genotyping approach allowed an accuraté discrimination between virus specimens.     

Kinetic measurements of gait for osteoarthritis research in dogs and cats

Over the past 2 decades the measurement of ground reaction forces (GRF) has been extensively used in dogs and cats to gain insights on normal locomotion, discrepancies under pathologic conditions, and biomechanical changes following surgical procedures. Ground reaction forces have become a well-established outcome measure of pain-related functional impairment in animals affected by experimental and naturally occurring osteoarthritis. This paper comprehensively reviews the nature of GRF and presents arguments regarding its measurement in osteoarthritis research.     

Improved water and rice residue managements reduce greenhouse gas emissions from paddy soil and increase rice yields

Paddy and Water Environment - Optimization of land-use practices of rice cultivation for the mitigation of the most significant greenhouse gas (GHG) emissions from agriculture methane (CH4) and...     

丝棉木种子处理与圃地养干技术研究

本文对丝棉木的种子处理与圃地养干技术进行了试验研究,结果认为:丝棉木播种育苗进行种子处理时,必须脱去假种皮进行冬季沙藏,才能取得较好效果。在苗圃地养干,以抹芽养干方法最好。     

Use of molecular markers for the development of new cultivars and the evaluation of genetic diversity

Molecular markers bring new information on the determinism of trait variation and the organisation of genetic diversity within plant species of agricultural interest. We review here how this information can be used to increase the efficiency of plant breeding programs, considering both theoretical analyses and recent experimental data. Use of mapping information to assemble alleles of interest is discussed first, considering an increasing complexity in trait determinism and its consequences on the breeding schemes. Experimental data now confirm the efficiency of these approaches. They call however, for (i) a better modelling of phenotype determinism, to better anticipate the final effect of marker assisted selection and (ii) studies that would address trait variation determinism within a broad diversity, to increase the probability to identify alleles of key interest and identify stable marker-trait associations. Recent promising developments in genetic diversity analysis are discussed with respect to these last objectives. This revised version was published online in July 2006 with corrections to the Cover Date.     

Evaluation of a commercial enzyme-based serum cholesterol test kit for analysis of phytosterol and phytostanol products

Plant sterols (phytosterols) have been shown to possess serum cholesterol-lowering properties. In recent years, several phytosterol-enriched functional food products have been developed and marketed. Some phytosterol products contain common unsaturated sterols and some contain a subset of phytosterols called phytostanols (saturated sterols, also called plant stanols). Current methods for the quantitative analysis of plant sterols are labor intensive and require sophisticated gas or liquid chromatographs. In this study, a popular commercial spectrophotometric serum cholesterol test kit was evaluated for the analysis of plant sterols. The results indicate that the method could be modified to analyze phytosterols and phytostanols by increasing the incubation time. Both free phytosterols and fatty acyl phytosteryl esters were quantitatively analyzed, but ferulate phytosteryl esters, such as those that are found in corn and other cereals, were not hydrolyzed by the enzymes in the test kit and therefore were not detected.     

Transcriptome profiling helps to identify potential and true molecular switches of stealth to brute force behavior in <Emphasis Type="Italic">Pectobacterium atrosepticum</Emphasis> during systemic colonization of tobacco plants

In the present study, we have monitored the process of systemic plant colonization by the plant pathogenic bacterium Pectobacterium atrosepticum (Pba) using RNA-Seq analysis in order to compare bacterial traits under in planta and in vitro conditions and to reveal potential players that participate in switching from stealth to brute force strategy of the pathogen. Two stages of tobacco plant colonization have been assayed: i) the initial one associated with visually symptomless spread of bacteria throughout the host body via primary xylem vessels where bacterial emboli were formed (stealth strategy), and ii) the advanced stage coupled with an extensive colonization of core parenchyma and manifestation of soft rot symptoms (brute force strategy). Plant-inducible genes in Pba and potential players switching the pathogen’s behavior were revealed. Genes from the cfa locus responsible for the production of coronafacic acid displayed the strongest induction in the asymptomatic zone relative to the symptomatic one and were shown experimentally to act as the true strategy “switchers” of Pba behavior in planta. Surprisingly, cfa genes appeared to be unnecessary for establishment of the asymptomatic stage of plant colonization but were required for the transition to soft-rot-associated symptomatic stage coupled with over-induction of jasmonate-mediated pathway in the plant.     

When warmer means weaker: high temperatures reduce behavioural and immune defences of the larvae of a major grapevine pest

Phytophagous insects evolving in agroecosystems express numerous defences when faced with myriads of natural enemies. Such defensive traits might impair the effectiveness of biological control relying on these natural enemies, mostly parasitoids. In the case of parasitoid threat, these defences consist of the avoidance of the parasitoid (reduced exposure to antagonists through shortening of developmental time), hindrance of oviposition (evasive behaviours and morphological protection) or destruction of the parasitoid eggs (encapsulation and melanisation by means of the immune system). Previous works focused on one defensive trait only when investigating the effects of temperature on host resistance. By doing so, they assumed that all defensive traits would respond uniformly to a change occurring in thermal environment, which remains an undocumented fact. To test this assumption in the context of global warming, we adopted a global overview of host resistance by examining the effects of rising temperatures on multiple defensive traits used by the grape pest, Lobesia botrana, against its larval parasitoids. Although warmer conditions led to reduced exposure to parasitoids by accelerating larval development, warmer conditions also elicited extensive weakening of behavioural and immune defences. These results confirm that temperatures might differently modulate the levels of expression of several defensive traits. An increase in growth rate and pupal mass also occurred, especially for females, which may contribute to greater pest fecundity in the future. However, the decline of L. botrana resistance might enhance the efficiency of the biological control naturally exerted by parasitoids in vineyards, thereby limiting the damage to crops.     

Rice rhizodeposition and its utilization by microbial groups depends on N fertilization

Rhizodeposits have received considerable attention, as they play an important role in the regulation of soil carbon (C) sequestration and global C cycling and represent an important C and energy source for soil microorganisms. However, the utilization of rhizodeposits by microbial groups, their role in the turnover of soil organic matter (SOM) pools in rice paddies, and the effects of nitrogen (N) fertilization on rhizodeposition are nearly unknown. Rice (Oryza sativa L.) plants were grown in soil at five N fertilization rates (0, 10, 20, 40, or 60 mg N kg^?1 soil) and continuously labeled in a ¹³CO₂ atmosphere for 18 days during tillering. The utilization of root-derived C by microbial groups was assessed by ¹³C incorporation into phospholipid fatty acids. Rice shoot and root biomass strongly increased with N fertilization. Rhizodeposition increased with N fertilization, whereas the total ¹³C incorporation into microorganisms, as indicated by the percentage of ¹³C recovered in microbial biomass, decreased. The contribution of root-derived ¹³C to SOM formation increased with root biomass. The ratio of ¹³C in soil pools (SOM and microbial biomass) to ¹³C in roots decreased with N fertilization showing less incorporation and faster turnover with N. The ¹³C incorporation into fungi (18:2ω6,9c and 18:1ω9c), arbuscular mycorrhizal fungi (16:1ω5c), and actinomycetes (10Me 16:0 and 10Me 18:0) increased with N fertilization, whereas the ¹³C incorporation into gram-positive (i14:0, i15:0, a15:0, i16:0, i17:0, and a17:0) and gram-negative (16:1ω7c, 18:1ω7c, cy17:0, and cy19:0) bacteria decreased with N fertilization. Thus, the uptake and microbial processing of root-derived C was affected by N availability in soil. Compared with the unfertilized soil, the contribution of rhizodeposits to SOM and microorganisms increased at low to intermediate N fertilization rates but decreased at the maximum N input. We conclude that belowground C allocation and rhizodeposition by rice, microbial utilization of rhizodeposited C, and its stabilization within SOM pools are strongly affected by N availability: N fertilization adequate to the plant demand increases C incorporation in all these polls, but excessive N fertilization has negative effects not only on environmental pollution but also on C sequestration in soil.