Multivariate approach to evaluate the penetrometer resistance in different tillage systems

At present, the penetrometer is the most widely used instrument for assessing in situ soil strength, one of the extrinsic factors affecting plant growth and crop productivity. In this paper we propose a method that discriminates penetrometer resistance due to different soil treatments, by means of Principal Component (PC) analysis. We hypothesized and demonstrated that penetrometer resistance values measured at different soil depths are correlated among themselves (multicollinearity). Considering measurements at each depth as different variables, PC analysis restructured data sets containing these correlated variables into a smaller number of components, whose scores were utilized in univariate analysis of variance (ANOVA) to test differences among imposed soil treatments. We applied the procedure to penetrometer resistance values measured by means of a hand-held cone penetrometer in two long-term experiments conducted in southern Italy, on durum wheat (Triticum durum Desf.) under continuous cropping. In the first trial, four different soil tillage treatments were compared; in the second, two different tillages and two residue management systems were examined. In both trials, PC analysis reduced the original 14 depths of measurements into only 4 PC's, based on correlations of their resistance values, explaining more than 80% of the total variation. Furthermore, ANOVA applied to the scores of each PC, clearly indicated treatment effects on soil strength.

The proposed method has thus allowed assemblage a posteriori of penetration resistance data into only a few significative intervals, using correlations among the measurements made at the different depths. This way, the possible resistance differences due to tillage and/or management treatments have been more easily and more unambiguously showed.     

Identification of toxigenic Pasteurella multocida in atrophic rhinitis of pigs by in vitro characterisation

Toxigenic strains of Pasteurella multocida were readily differentiated from non-toxigenic strains by an agarose overlay method using bovine turbinate cells or bovine lung cells. Cells which were young and densely confluent were best suited to this assay. The incubation period required to distinguish toxigenic strains was dependent on the confluence of the monolayers, which was affected by the seeding rate, cell passage level and growth time prior to overlay. The agarose overlay method correctly identified 11 of 11 reference strains of Pasteurella multocida, and visible cytotoxic changes were present in the monolayers after 48 to 65 h. Outbreaks of the enzootic form of atrophic rhinitis in 2 New South Wales piggeries were associated with the isolation of toxigenic type D strains of P. multocida.     

Uterine infection with bovine herpesvirus type 4 in dairy cows

Diseases of the reproductive tract are a frequent problem in dairy herds. Herpesviruses are uterine pathogens also involved in other clinical diseases; for example, bovine herpesvirus type 4 BoHV‐4 induces abortion, enteritis, metritis, pneumonia and vaginitis, but it can also be detected in healthy cows. The role of BoHV‐4 in the development of clinical endometritis (CE) or subclinical endometritis (SE) has not clearly been described. Therefore, the objective of this study was to describe the prevalence of uterine BoHV‐4 infection and its relationship with clinical, bacteriological and cytological findings in dairy cows 20–30 days after calving. The experiment was performed as a completely randomized block design, with farm (n = 10) as blocking criterion and with cow (n = 397) as the experimental unit. Logistic regression models were used to assess the effect of BoHV‐4 infection on CE, SE and reproductive performance. Proportion of cows infected with BoHV‐4 was 5.8% (n = 23/397). BoHV‐4 was isolated in 11.0% (n = 12/109), 4.8% (n = 4/84) and 3.6% (n = 7/194) of cows diagnosed as CE, SE or healthy, respectively. A logistic model revealed that BoHV‐4 infection showed a tendency to increase the risk for CE (AOR = 2.17; p = .10) but significantly reduced both, the odds for artificial insemination within 80 days post‐partum (dpp) (AOR = 0.37; p = .035) and for pregnancy within 200 dpp (AOR = 0.13; p = .004). Furthermore, BoHV‐4 infection increased the chance for intrauterine infection with Trueperella pyogenes (AOR = 5.55; p < .001) and vice versa (AOR = 5.79, p < .001). In conclusion, BoHV‐4 infection is associated with reduced chances for insemination and pregnancy by 200 dpp and showed a trend to be associated with increased risk for CE. Furthermore, BoHV‐4 and Trueperella pyogenes infections are strongly related.     

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

Genomes of animals as different as sponges and humans show conservation of global architecture. Here we show that multiple genomic features including transposon diversity, developmental gene repertoire, physical gene order, and intron-exon organization are shattered in the tunicate Oikopleura, belonging to the sister group of vertebrates and retaining chordate morphology. Ancestral architecture of animal genomes can be deeply modified and may therefore be largely nonadaptive. This rapidly evolving animal lineage thus offers unique perspectives on the level of genome plasticity. It also illuminates issues as fundamental as the mechanisms of intron gain.     

An approach to acorn production in Iberian dehesas

Acorn production is one of the most important products in silvopastoral systems in the Mediterranean region. In the present study we carried out two preliminary trials to analyze the distribution of production over time and the effect of pruning. The objective was to develop tools to manage this valuable resource within these systems. In the first part of the study, we analyzed the total acorn production of a holm oak stand, and its seasonal distribution (October–January) over two years (1997–1998 and 1998–1999) in five sites in the southwest of Spain. Mean total acorn production ranged from 590 to 830 kg ha⁻¹. There was considerable variation between the different sites and years studied, as was expected from studies on other oak species. A comparison was also made of acorn production, comparing annual acorn production between 40 pruned and 40 non-pruned trees, for the period 1994–1999. There was an interaction between ‘pruning treatment’ and ‘year’. Pruning, significantly decreased acorn production in all but two years when production was above the average, whereas production was not affected by pruning the three years that acorn yield was below the average. The study of acorn production and the analysis of the effect of pruning, needs to be studied over a longer time period.     

Monovarietal extra virgin olive oils: correlation between thermal properties and chemical composition

Thermal properties of monovarietal extra virgin olive oils were evaluated by means of differential scanning calorimetry (upon cooling) and related to their chemical composition (triacylglycerols, diacylglycerols, total and free fatty acids, oxidation status). The overall crystallization enthalpy did not significantly differ among samples and did not account for the differences observed in chemical compositions. On the contrary, a higher degree of unsaturation in the lipid profile induced a shift of the crystallization onset towards lower temperatures and narrowing of the crystallization temperature range. The presence of triacylglycerol lysis and lipid oxidation products shifted the crystallization towards higher temperatures and the phase transition developed over a larger temperature range. Differential scanning calorimetry thermograms were deconvoluted into three constituent exothermic peaks for all samples. The area of the two lower-temperature exotherms was found to be statistically correlated with the amount of triunsaturated and monosaturated triacylglycerols present in the oil. Thermal properties of extra virgin olive oil were found to be affected by oil chemical composition.     

Prevalence and concentration of Verotoxigenic Escherichia coli O157:H7 in adult sheep at slaughter from Italy

A 1-year study on the animal-level prevalence and concentration of Escherichia coli O157 in adult sheep at slaughter was performed, to collect qualitative and quantitative information on the diffusion of the pathogen in adult sheep from Italy. A total 533 samples were collected, with a similar distribution in the four seasons. For prevalence estimates, a simple random sampling technique was used. An immuno-magnetic separation technique was used for sample screening, with enumeration of the pathogen in positive samples, along with molecular and serological identification of isolates. An overall prevalence of 7.1% (38/ 533, 95% CI 4.9-9.3%) was observed for fully virulent E. coli O157. A wide interval of VTEC O157 per gram was observed (< 100 to 6 x 10(5) CFU g(-1)), with 28.9% (11/38) of positive samples > or = 1 x 10(3) CFU g(-1), set as the threshold for those animals defined 'active shedders' for the purpose of the study. Eight per cent (3/38) of animals shed > 1 x 10(4) g(-1) VTEC O157, which represents > 96% of the total VTEC O157 bacteria cultured from all animals tested. The prevalence estimate of active shedders was therefore 2.1% (95% CI 0.9-3.3%). Most (34/38, 89.5%) of the positive animals were found in summer (July-September). Prevalence and concentrations of virulent VTEC O157 obtained in this study contribute to the demonstration that adult sheep represent a relevant source of environmental contamination from virulent VTEC O157, as well as a source of VTEC O157 contamination for food of ovine origin (meat and dairy products), especially during warm months.