Combining isotopic signatures of n(Sr)/n(Sr) and light stable elements (C,N, O,S) with multi-elemental profiling for the authentication of provenance of European cereal samples

The aim of this work (from the FP6 project TRACE) was to develop methods based on the use of geochemical markers for the authentication of the geographical origin of cereal samples in Europe (cf. EC regulations 2081/92 and 1898/06). For the first time, the potential usefulness of combining n(⁸⁷Sr)/n(⁸⁶Sr) and δ¹³C, δ¹⁵N, δ¹⁸O and δ³⁴S isotopic signatures, alone or with key element concentrations ([Na], [K], [Ca], [Cu] and [Rb], progressively identified out of 31 sets of results), was investigated through multiple step multivariate statistics for more than 500 cereal samples collected over 2 years from 17 sampling sites across Europe representing an extensive range of geographical and environmental characteristics.     

Plasticity of animal genome architecture unmasked by rapid evolution of a pelagic tunicate

Genomes of animals as different as sponges and humans show conservation of global architecture. Here we show that multiple genomic features including transposon diversity, developmental gene repertoire, physical gene order, and intron-exon organization are shattered in the tunicate Oikopleura, belonging to the sister group of vertebrates and retaining chordate morphology. Ancestral architecture of animal genomes can be deeply modified and may therefore be largely nonadaptive. This rapidly evolving animal lineage thus offers unique perspectives on the level of genome plasticity. It also illuminates issues as fundamental as the mechanisms of intron gain.     

Brownian motion of stiff filaments in a crowded environment

The thermal motion of stiff filaments in a crowded environment is highly constrained and anisotropic; it underlies the behavior of such disparate systems as polymer materials, nanocomposites, and the cell cytoskeleton. Despite decades of theoretical study, the fundamental dynamics of such systems remains a mystery. Using near-infrared video microscopy, we studied the thermal diffusion of individual single-walled carbon nanotubes (SWNTs) confined in porous agarose networks. We found that even a small bending flexibility of SWNTs strongly enhances their motion: The rotational diffusion constant is proportional to the filament-bending compliance and is independent of the network pore size. The interplay between crowding and thermal bending implies that the notion of a filament's stiffness depends on its confinement. Moreover, the mobility of SWNTs and other inclusions can be controlled by tailoring their stiffness.     

The Mucus of Actinia equina (Anthozoa,Cnidaria): An Unexplored Resource for Potential Applicative Purposes

The mucus produced by many marine organisms is a complex mixture of proteins and polysaccharides forming a weak watery gel. It is essential for vital processes including locomotion, navigation, structural support, heterotrophic feeding and defence against a multitude of environmental stresses, predators, parasites, and pathogens. In the present study we focused on mucus produced by a benthic cnidarian, the sea anemone Actinia equina (Linnaeus, 1758) for preventing burial by excess sedimentation and for protection. We investigated some of the physico-chemical properties of this matrix such as viscosity, osmolarity, electrical conductivity, protein, carbohydrate, and total lipid contents. Some biological activities such as hemolytic, cytotoxic, and antibacterial lysozyme-like activities were also studied. The A. equina mucus is mainly composed by water (96.2% ± 0.3%), whereas its dry weight is made of 24.2% ± 1.3% proteins and 7.8% ± 0.2% carbohydrates, with the smallest and largest components referable to lipids (0.9%) and inorganic matter (67.1%). The A. equina mucus matrix exhibited hemolytic activity on rabbit erythrocytes, cytotoxic activity against the tumor cell line K562 (human erythromyeloblastoid leukemia) and antibacterial lysozyme-like activity. The findings from this study improve the available information on the mucus composition in invertebrates and have implications for future investigations related to exploitation of A. equina and other sea anemones’ mucus as a source of bioactive compounds of high pharmaceutical and biotechnological interest.     

Bovine serum albumin produces a synergistic increase in the antioxidant activity of virgin olive oil phenolic compounds in oil-in-water emulsions

Virgin olive oil is valued for its flavor, but unacceptable off-flavors may develop on storage in food products containing this oil due to oxidation. The oxidative stability of oil-in-water emulsions containing bovine serum albumin (BSA) and virgin olive oil phenolic compounds was studied. Four oil-in-water emulsions with and without BSA and phenols isolated from virgin olive oil were prepared. These model systems were stored at 60 degrees C to speed up lipid oxidation. Primary and secondary oxidation products were monitored every three days. Peroxide values and conjugated diene contents were determined as measures of the primary oxidation products. p-Anisidine values and volatile compounds were determined as measures of the secondary oxidation products. This latter determination was carried out by headspace solid-phase microextraction coupled with gas chromatography. Although olive oil phenolic compounds and BSA contributed some antioxidant activity when present as individual additives, the combination of BSA with phenols in an emulsion showed 58-127% synergy, depending on which analytical method was used in the calculation. The emulsion containing phenolic compounds and BSA showed a low level of deterioration after 45 days of storage at 60 degrees C.     

Effect of lime-induced leaf chlorosis on ochratoxin A, trans-resveratrol, and epsilon-viniferin production in grapevine (Vitis vinifera L.) berries infected by Aspergillus carbonarius

Berries of Vitis vinifera L. cv. Merlot, grown on a neutral or calcareous soil, were infected, at phenological phases of veraison and ripening, by a conidial suspension of Aspergillus carbonarius to control ochratoxin A production and trans-resveratrol- and epsilon-viniferin-induced synthesis as affected by the soil lime content. Chlorosis occurrence was evaluated by a visual rating scale at veraison, and the leaves from vines growing on the calcareous soil showed the typical yellowing, whereas those grown on the neutral soil were dark green. Berry mineral element yield was recorded at veraison and ripening. Infection symptoms on berries were more severe at ripening in bunches collected from vines grown in calcareous soil. Ochratoxin A concentration increased at phenological phase of veraison in berries harvested from vines cultivated in calcareous soil. A. carbonarius enhanced trans-resveratrol and epsilon-viniferin production in infected berries more than in the control samples. Moreover, at veraison their concentration in the berries collected from vines grown in calcareous soil was greater than that recorded from berries collected from vines grown in the neutral soil. The lowest symptom severity was observed on berries containing the highest copper concentration.     

Multivariate approach to evaluate the penetrometer resistance in different tillage systems

At present, the penetrometer is the most widely used instrument for assessing in situ soil strength, one of the extrinsic factors affecting plant growth and crop productivity. In this paper we propose a method that discriminates penetrometer resistance due to different soil treatments, by means of Principal Component (PC) analysis. We hypothesized and demonstrated that penetrometer resistance values measured at different soil depths are correlated among themselves (multicollinearity). Considering measurements at each depth as different variables, PC analysis restructured data sets containing these correlated variables into a smaller number of components, whose scores were utilized in univariate analysis of variance (ANOVA) to test differences among imposed soil treatments. We applied the procedure to penetrometer resistance values measured by means of a hand-held cone penetrometer in two long-term experiments conducted in southern Italy, on durum wheat (Triticum durum Desf.) under continuous cropping. In the first trial, four different soil tillage treatments were compared; in the second, two different tillages and two residue management systems were examined. In both trials, PC analysis reduced the original 14 depths of measurements into only 4 PC's, based on correlations of their resistance values, explaining more than 80% of the total variation. Furthermore, ANOVA applied to the scores of each PC, clearly indicated treatment effects on soil strength.

The proposed method has thus allowed assemblage a posteriori of penetration resistance data into only a few significative intervals, using correlations among the measurements made at the different depths. This way, the possible resistance differences due to tillage and/or management treatments have been more easily and more unambiguously showed.     

Seasonal patterns of spore deposition of heterobasidion species in four forests of the Western alps

ABSTRACT Patterns of spore deposition by Heterobasidion species were studied between the spring of 1998 and December 2000 in four forests in the western Alps using woody traps. The maximum spore deposition rate (DR) ranged from 169 to 1,550 spores m(-2) h(-1). Although spores were captured from February to October at most sites, inoculum concentration consistently peaked in the late summer or early fall. In one of the four study sites, similar patterns of DR were recorded in 2 years of sampling. A significant correlation (r = 0.654, P = 0.001) was found between DR and the average minimum air temperature in the 4 weeks before sampling. Approximately 1,200 spores were isolated and identified at the species level by polymerase chain reaction-based methods. Single-spore isolates were consistently clampless, indicating the sampled airspora was almost exclusively composed of haploid basidiospores. No significant variations of basidiospore frequencies were detected for either H. abietinum or H. annosum among sampling periods. However, the frequency of H. parviporum spores was always significantly higher in the summer. These findings suggest different patterns of sporulation among Heterobasidion species.     

Cladosporium cladosporioides‐complex infection in a mixed‐breed dog

A 3‐year‐old female mixed‐breed dog was referred with a 2‐day history of serious dyspnea, coughing, lethargy, anorexia, and a low‐grade right anterior lameness. At presentation, the dog had an increased respiratory rate, dull heart and lung sounds, and cyanotic mucous membranes. It was hyperthermic and slightly dehydrated. Laboratory findings showed mild neutrophilia with a left shift, while serum biochemistry variables were in the normal range. However, urinalysis revealed mild proteinuria and rare erythrocytes and leukocytes on sediment examination. Thoracic radiographs showed a diffuse mixed interstitial and alveolar pattern with an air bronchogram, while appendicular radiographs showed a right humeral interrupted brush‐like periosteal reaction. Thoracic ultrasonography revealed mediastinal lymph node enlargement. Cytology from a fine‐needle aspirate of mediastinal lymph nodes revealed a pyogranulomatous lymphadenitis with numerous fungal hyphae. Culture on Sabouraud dextrose agar isolated dark fungal colonies with microscopic features consistent with Cladosporium spp. Sequencing of the internal transcribed spacer region identified the fungus as a species of the Cladosporium cladosporioides‐complex.