A real-time polymerase chain reaction assay for the detection of the myxozoan parasite Henneguya ictaluri in channel catfish

Proliferative gill disease (PGD), caused by the myxozoan parasite Henneguya ictaluri, is the most prevalent parasitic infection affecting commercial channel catfish (Ictalurus punctatus) aquaculture. There are currently no effective chemotherapeutic or biological control measures for PGD, which often peaks during the spring and fall when water temperatures are between 16-25 degrees C. The current diagnostic techniques of gross examination of gill clip wet mounts and histopathology are subject to false-negatives during the early stages of infection, and the quantifiable nature of end-point polymerase chain reaction (PCR) is subjective. Consequently, a rapid and more sensitive quantitative real-time PCR assay was developed for the detection of H. ictaluri during the early stages of infection in channel catfish. A 23 base-pair TaqMan probe was designed based on previously published H. ictaluri PCR protocols. The sensitivity of the assay was the equivalent of a single H. ictaluri actinospore, and in a pond challenge study, quantitative real-time PCR proved to be more sensitive than gross examination, microscopic examination of gill clip wet mounts, and histopathologic examination of gill tissue sections. Future applications of this assay will focus on developing methodologies to be used in conjunction with current pond-monitoring protocols to evaluate potential treatments and better manage this significant seasonal disease.     

Historical change in coastal sage scrub in southern California,USA in relation to fire frequency and air pollution

Invasions resulting in the transformation of one ecosystem to another are an increasingly widespread phenomenon. While it is clear that these conversions, particularly between grassland and shrubland systems, have severe consequences, it is often less clear which factors are associated with these conversions. We resampled plots from the 1930s (Weislander VTMs) to test whether two widely assumed factors, changes in fire frequency and nitrogen deposition, are associated with the conversion of coastal sage scrublands to exotic grasslands in southern California. Over the 76-year period, coastal sage scrub cover declined by 49%, being replaced predominantly by exotic grassland species. Grassland encroachment was positively correlated with increased fire frequency and, in areas with low fire frequencies, air pollution (percent fossil carbon as indicated by ∂¹⁴C, likely correlated with nitrogen deposition). We conclude that increases in fire frequency and air pollution over the last several decades in southern California may have facilitated the conversion of coastal sage shrubland to exotic grassland systems.     

To sea or not to sea? Multiple lines of evidence reveal the contribution of non‐diadromous recruitment for supporting endemic fish populations within New Zealand's longest river

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Effects of stocking density,ration and temperature on growth,survival and metamorphosis of auricularia larvae of the California sea cucumber,Parastichopus californicus

The combined effects of stocking density (0.2, 0.5, 1, 2, 4 and 8 inds/ml) and dietary microalgal ration (20,000 and 40,000 cells/ml) and the sole effect of temperature (10, 12, 14, 16, 18 and 22°C) on the specific growth rate (SGR), per cent survival and per cent metamorphosis of auricularia larvae of the California sea cucumber, Parastichopus californicus, were evaluated in two separate experiments. The SGR was not significantly affected by stocking densities in the range of 0.2 to 4 inds/ml, but was significantly reduced at 8 inds/ml. The SGR of larvae fed 20,000 cells/ml was significantly reduced in comparison to those fed 40,000 cells/ml. Larvae had significantly higher per cent survival and per cent metamorphosis when reared at densities of 0.2 and 0.5 inds/ml compared with those reared at 2–8 inds/ml. Microalgal ration level did not significantly impact survival or metamorphosis. Larvae reared at 16 and 18°C had significantly higher SGRs and per cent metamorphosis than those held at all other temperatures, while per cent survival was highest at 16°C. Based on these results, we recommend rearing auricularia larvae of P. californicus at a stocking density at or below 0.5 inds/ml, a dietary ration of 40,000 cells/ml, and a temperature of 16°C.     

Field variability and vulnerability index to identify regional precision agriculture opportunity

Innovations in precision agriculture (PA) have created opportunities to achieve a greater understanding of within-field variability. However, PA adoption has been hindered by uncertainty about field-specific performance and return on investment. Uncertainty could be better addressed by using innovative analyses that provide insights into variability among fields and across a region. The objectives of this research were to: (1) generate a within-field soil clay-content variability index (VI_c), (2) create a regional-scale growing-season precipitation variability index (VI_p), and (3) integrate the soil and weather indices with the USDA NRCS soil erosion vulnerability index (SVI) to produce a final index that incorporated both variability and vulnerability (VVI). The interpretation of the outcomes represented by each objective supports unique decisions that land managers may consider for reducing uncertainty about implementing PA. All indices were derived using publically available information for Missouri, USA. The VI_c was the ratio between the maximum and minimum clay content within fields. The VI_p was calculated as the standard deviation of the total growing-season precipitation from 2006 to 2015. Significant clustering of VI_c and VI_p were observed along the Missouri River corridor, northeast and northwest Missouri. Fields with high VVI were mostly in the claypan soil region of northeast Missouri, and along a portion of the Missouri River dominated by loess soils on steep slopes. Southeast Missouri displayed the greatest diversity in soil and weather variability, but had low vulnerability. This research could be used as a decision-support tool to aid producers and PA service and product providers in determining where PA opportunities exist.     

Fencing for conservation: Restriction of evolutionary potential or a riposte to threatening processes?

Fencing for conservation is an acknowledgement that we are failing to successfully coexist with and, ultimately, conserve biodiversity. Fences arose during the Neolithic revolution to demarcate resource-rich areas (food sources) and exclude threats (intruders). Fencing for conservation can be viewed as fulfilling a similar function. The aims of this paper were to identify when fencing can and is used to conserve biodiversity; highlight the costs and benefits of fencing for conservation; and make recommendations to ensure appropriate use of fencing for conservation in the future. The IUCN identifies ten major threatening processes and the impacts of eight of these can be mitigated via the use of fencing, however avoiding human-animal conflict and reducing the impact of introduced predators are the two most common uses. Fences implemented to achieve a conservation benefit are not necessarily physical barriers, but can also include ‘metaphorical’ fences of sound, smoke and smell, or even actual islands. Fences provide defined units for managers and separate biodiversity from threatening processes including human persecution, invasive species and disease. Conversely, they are costly to build and maintain; they have ecological costs through blocking migration routes, restriction of biodiversity range use which may result in overabundance, inbreeding and isolation; restriction of evolutionary potential; management; amenity and ethical costs. Despite these problems, fencing for conservation is likely to become increasingly utilized as biodiversity becomes increasingly threatened and methods of ameliorating threats lag behind. In the long-term, fences may ultimately prove to be as much a threat to biodiversity as the threats they are meant to exclude, and a new research agenda should arise to ensure that conservation fences do not remain a permanent part of the landscape.     

In vitro susceptibility patterns of Aspergillus and Fusarium species isolated from equine ulcerative keratomycosis cases in the midwestern and southern United States with inclusion of the new antifungal agent voriconazole

Objective  To evaluate and compare the in vitro susceptibility of Aspergillus and Fusarium spp. isolated from horses with ulcerative keratomycosis, address regional differences in equine keratomycosis isolates, and provide susceptibility data to update prior studies.
Animal studied  Fourteen horses with ulcerative keratomycosis.
Procedures  Banked fungal isolates from equine corneal ulcers (eight Aspergillus spp. and six Fusarium spp.) were identified at The University of Texas Health Science Center at San Antonio. In vitro minimum inhibitory concentration and susceptibility to natamycin, fluconazole, itraconazole, voriconazole, ketoconazole, and miconazole were determined for each isolate.
Results  Fungi were significantly more susceptible to voriconazole than to natamycin, itraconazole, fluconazole, and ketoconazole, but miconazole susceptibility did not differ significantly from voriconazole. Aspergillus spp. were most susceptible to voriconazole, miconazole, and itraconazole, which were significantly better to fluconazole and ketoconazole. Fusarium spp. susceptibility was greatest to natamycin and voriconazole and lowest to itraconazole and ketoconazole. Fusarium spp. were significantly less susceptible to itraconazole and ketoconazole compared to natamycin. No significant differences in susceptibility were found when isolates from Florida were compared with isolates from other states.
Conclusions and clinical relevance  Based on in vitro evidence, voriconazole appears to be the most effective antifungal for initial treatment of equine keratomycosis in the midwestern and southern United States. Results are comparable with previous studies in that isolated fungi from equine keratomycosis cases showed consistently poor susceptibility to fluconazole. Organisms isolated in different geographic locations of the midwestern and southern United States appeared to have similar patterns of antifungal susceptibility.     

跛行不仅仅是牛的问题

从本期起,我们将分多期,重点推出猪,特别是母猪的蹄部问题及其防治技术,以提高广大养猪生产者对此病的认识和重视,有助于他们解决此困扰生产、影响经济收益的疾病。也希望擅长此病预防的读者能提供心得体会或相关素材,与大家一起分享。对提供素材的读者,我们将给予一定的奖励。     

Stable carbon isotopes accurately predict diet selection by sheep fed mixtures of C3 annual pastures and saltbush or C4 perennial grasses

The stable carbon isotope technique has been widely used to infer the dietary ecology of a range of animal species; however calibration of the technique with animals fed known diets is essential for accurate back-calculation of dietary preferences. The aim of this study was to identify suitable samples and back-calculation methods to predict short-term (2 to 3 week) dietary selection by sheep among plants with C₃ and C₄ photosynthetic pathways. Variation in integration time of dietary carbon into plasma and faeces; diet-tissue discrimination of carbon isotopes (fractionation) and the importance of accounting for the digestible or indigestible components of the diet was investigated. The results indicate that faecal and rumen samples provided the most accurate prediction of short term dietary changes in sheep selecting between C₃ and C₄ plants. The most accurate back-calculation method for these samples used δ¹³C of the C₃ and C₄ plants and accounted for both diet-tissue discrimination and differences in the indigestibility between the C₃ and C₄ forage. For faecal samples, the organic matter content of the diet originating from C₄ plants could be predicted with a mean error as low as 2.7%. Wool and plasma samples were not conducive to predicting proportion of C4 forage in the diet within 18 days after a change in diet; however plasma could be used to discriminate between animals fed 100% C₃ and C₄ diets after 3 days. The δ¹³C technique provides a valuable tool for researchers when designing pastures for dual environmental and production purposes. An understanding of what sheep select allows for development of appropriate grazing management strategies to optimise productivity and/or persistence of target species.     

Otolith chemistry of triplefin Forsterygion nigripenne indicates estuarine residency

Fisheries Science - Understanding the role different habitats play in the life histories of fishes is important for the development of holistic aquatic ecosystem management plans. We used otolith...