Reconstructing historical trends of small pelagic fish in the Java Sea using standardized commercial trip based catch per unit of effort

Pelagic fish stocks in the Java Sea have been exploited intensively since the beginning of the 1970s. However, due to the effect of increased fishing power of the fleets and the changing nature of spatial and temporal distribution of the fishing effort, assessment of stock trends based on commercial data of catch and effort requires the standardization of both effort and catch data. Here we present the first attempt to reconstruct a standardized time series of commercial catch per unit of effort (CPUE) for the main pelagic species exploited by the purse seine fleet in the Java Sea. The results showed that all the stocks analysed have largely declined since the beginning of the 1990s. For bigeye scad, Indian mackerel and sardine, current estimates are only between 3 and 19% of the maximum observed value while round scads and spotted sardine biomass estimates lie between 18 and 34%. However, our assumptions about the effect of lamp power and level of creeping and the fact that the influence of fish density on catchability and the effect of targeting were not taken into account thus observed decline is a rather conservative estimate of the real decline of the stocks. If effective management actions are not put in place as a matter of urgency in the Java Sea for small pelagic fisheries, one runs the risk of adding those species to the long list of overexploited stocks of the world oceans.     

Guava (<Emphasis Type="Italic">Psidium guajava L</Emphasis>. cv. Red Suprema) Crude Extract Protect Human Dermal Fibroblasts against Cytotoxic Damage Mediated by Oxidative Stress

We analyzed guava fruits (Psidium guajava L. cv. Red Suprema) from Cuba to determine their chemical composition, total antioxidant capacity, as well as their protective effect against oxidative damage using an in vitro model of human dermal fibroblasts. The guava fruit is a natural source of bioactive compounds, such as polyphenols, vitamin C, folates and beta carotenes with proven health benefits. Human dermal fibroblasts were pre-incubated with different concentrations of guava crude extract and then subjected to oxidative stress using the AAPH stressor. The number of apoptotic and dead cells, as well as the markers of oxidative damage such as lipid and protein oxidation significantly decreased when cells were pre-incubated with guava crude extract and then exposed to the stressor. The activity of antioxidant enzymes also improved when cells were pre-incubated with guava crude extract in comparison to cells subjected to stress without prior pre-incubation with the guava extract. The results obtained in this study highlight the health benefits of guava regarding oxidative stress, proving it to be an important source of bioactive compounds associated with important biological properties.     

UCE: A uracil excision (USER™)-based toolbox for transformation of cereals

Background  

Cloning of gene casettes and other DNA sequences into the conventional vectors for biolistic or Agrobacterium-mediated transformation is hampered by a limited amount of unique restriction sites and by the difficulties often encountered when ligating small single strand DNA overhangs. These problems are obviated by "The Uracil Specific Excision Reagent (USER™)" technology (New England Biolabs) which thus offers a new and very time-efficient method for engineering of big and complex plasmids.     

Perturbation of the EphA2-EphrinA1 System in Human Prostate Cancer Cells by Colonic (Poly)phenol Catabolites

The Eph tyrosine kinase receptors and their ephrin ligands play a central role in human cancer as their deregulated expression induces tumorigenesis with aggressive phenotypes. To evaluate their potential contribution to EphA2-ephrinA1 modulation, several colonic catabolites of dietary (poly)phenolics, known to be generated in vivo, were screened using an ELISA-based binding assay. Some of the catabolites inhibited the binding in a dose-dependent manner (IC(50) values from 0.26 to 43 μM). Functional studies on prostate adenocarcinoma cells revealed that pyrogallol and protocatechuic acid specifically antagonized ephrinA1-Fc-induced EphA2 phosphorylation at concentrations that were not cytotoxic. The active concentrations of pyrogallol appear to be close to what can be reached in vivo under physiological conditions. Finally, because of the roles played by the Eph-ephrin system not only in cancer development but also in neurodegeneration and diabetes, pyrogallol and protocatechuic acid are candidates for more detailed functional studies to elucidate their role in these pathophysiological processes.     

Stenotrophomonas rhizophila DSM14405T promotes plant growth probably by altering fungal communities in the rhizosphere

Stenotrophomonas rhizophila DSM14405^T is of high biotechnological interest as plant growth stimulator, especially for salinated conditions. The objective of this study was to determine the effect of plant species (cotton, tomato, and sweet pepper) on colonisation and plant growth promotion of this beneficial bacterium in gnotobiotic systems and in non-sterile soil. All plant structures (leaves, stems, and roots) were densely colonised by DSM14405^T reaching up to 10⁹ cells g^?1 fresh weight; under gnotobiotic conditions the abundances were 4–5 orders of magnitude higher than in non-sterile soil. Under non-sterile conditions and ambient humidity, tomato shoots were more densely colonised than shoots of sweet pepper and cotton. S. rhizophila DSM14405^T was shown to grow endophytically and colonise the vicinity of root hairs of tomato. Plant growth promotion was particularly apparent in tomato. In general, the impact of plant species on colonisation and plant growth promotion was more pronounced in soil than under gnotobiotic conditions and likely due to the control of diseases and deleterious microorganisms. S. rhizophila DSM14405^T was shown to control diseases in sweet pepper and in cotton. Molecular profiling via single strand conformation polymorphism of internal transcribed spacers and 16S rRNA genes (PCR-single strand conformational polymorphism (SSCP)) revealed that S. rhizophila DSM14405^T strongly affected fungal, but not bacterial communities in the rhizosphere of tomato and sweet pepper. Major SSCP bands related to uncultured fungi and Candida subhashii, disappeared in tomato rhizosphere after Stenotrophomonas treatment. This suggests an indirect, species-specific plant growth promotion effect of S. rhizophila via the elimination of deleterious rhizosphere organisms.     

Silicon and plant nutrition—dynamics,mechanisms of transport and role of silicon solubilizer microbiomes in sustainable agriculture: A review

Silicon (Si) is the second most abundant element in the Earth’s crust and has numerous roles in both soils and plants, although it is inaccessible to plants in its native state (insoluble silicate minerals). This inaccessibility can lead to insufficiency, which induces anomalies in plant growth and development.Specifically, Si alleviates various biotic and abiotic stresses in plants by enhancing tolerance mechanisms at different stages of uptake/deposition as a monosilicic acid. Exclusive utiliz...     

Fission–fusion dynamics of a pelagic delphinid in the arctic: the white-beaked dolphin (Lagenorhynchus albirostris)

Delphinids exhibit great variability in their social structures. It is therefore important to document lesser known species, in extreme changing habitats, to compare and contrast mechanisms driving sociality. Here, we describe the first long-term assessment of social structure of white-beaked dolphins (Lagenorhynchus albirostris) using a compiled version of SOCPROG 2.8 and an 11-year photo-identification dataset (2002–2013) collected from whale-watching vessels at 2 sites (Faxaflói and Skjálfandi bays) off Iceland. We identified a total of 487 dolphins which are suggested to be part of an open population as shown by the discovery curve obtained analyzing photo-id data. The social analyses were restricted to 35 adults which were sighted on ≥5 different days. The mean residency time of white-beaked dolphins in our 2 study areas was of 95 days (SE = 35.63; 95% CI: 23–171), with the “migration-full interchange” model best describing movements of dolphins in and out of our 2 study sites. Social differentiation in this population was high (Likelihood: S = 0.87, SE = 0.04; r = 0.31, SE = 0.03) indicating diverse, non-random social relationships. Temporal associations best fit the model of “casual acquaintances” against the standardized lagged association rates with the majority of white-beaked dolphin associations being short-term, but with a few long-term across years. Testing for preferred companionship, long-term associations are favored over short-term. In this study, associations among white-beaked dolphins are short-term but with desirably long-term associations fitting into a society with fission–fusion dynamics. This information expands the latitudinal range for which social structure has been described for oceanic dolphin species.     

Adenocarcinoma of the disseminated prostate in a cat

An adenocarcinoma of the disseminated prostate gland with pulmonary, myocardial and renal metastases is described in a 12-year-old, neutered male European cat. Histologically, the tumour was localised in the spongy layer of the prostatic urethra and showed an epithelial alveolar pattern. Considering the anatomic, microscopic and immunohistochemical findings, the tumour was diagnosed as an adenocarcinoma of the disseminated prostate gland. To our knowledge this is the first report of adenocarcinoma of the disseminated prostate gland in a cat.     

Effect of dietary arginine to lysine ratios on productive performance,meat quality,plasma and muscle metabolomics profile in fast-growing broiler chickens

Background: Due to the important functions of arginine in poultry,it should be questioned whether the currently adopted dietary Arg:Lys ratios are sufficient to meet the modern broiler requirement in arginine.The present study aimed,therefore,to evaluate the effects of the dietary supplementation of L-arginine in a commercial broiler diet on productive performance,breast meat quality attributes,incidence and severity of breast muscle myopathies and foot pad dermatitis(FPD),and plasma and muscle metabolomics profile in fast-growing broilers.Results: A total of 1,170 1-day-old Ross 308 male chicks was divided into two experimental groups of 9 replicates each fed either a commercial basal diet(CON,digestible Arg:Lys ratio of 1.05,1.05,1.06 and 1.07 in each feeding phase,respectively) or the same basal diet supplemented on-top with crystalline L-arginine(ARG,digestible Arg:Lys ratio of 1.15,1.15,1.16 and 1.17,respectively).Productive parameters were determined at the end of each feeding phase(12,22,33,43 d).At slaughter(43 d),incidence and severity of FPD and breast myopathies were assessed,while plasma and breast muscle samples were collected and analyzed by proton nuclear magnetic resonancespectroscopy.The dietary supplementation of arginine significantly reduced cumulative feed conversion ratio compared to the control diet at 12 d(1.352 vs.1.401,P 0.05),22 d(1.398 vs.1.420; P 0.01) and 33 d(1.494 vs.1.524; P 0.05),and also tended to improve it in the overall period of trial(1.646 vs.1.675; P = 0.09).Body weight was significantly increased in ARG compared to CON group at 33 d(1,884 vs.1,829 g; P 0.05).No significant effect was observed on meat quality attributes,breast myopathies and FPD occurrence.ARG birds showed significantly higher plasma concentration of arginine and leucine,and lower of acetoacetate,glutamate,adenosine and proline.Arginine and acetate concentrations were higher,whereas acetone and inosine levels were lower in the breast of ARG birds(P 0.05).Conclusions: Taken together,these data showed that increased digestible Arg:Lys ratio had positive effects on feed efficiency in broiler chickens probably via modulation of metabolites that play key roles in energy and protein metabolism.     

Use of s-100 and chromogranin a antibodies as immunohistochemical markers on detection of malignancy in aortic body tumors in dog

To define the characteristics of malignancy we performed routine histology and an immunohistochemical study on seventeen aortic body tumors in dogs. We essayed tumors using a panel of immunohistochemical markers: neuron specific enolase (NSE), chromogranin A (CrA) and S-100. Among 17 cases, the neoplastic cells were positive for NSE (17 cases, 100%), S-100 (9 cases, 53%), and CrA (8 cases, 47%), respectively. The sustentacular cells density and chief cell staining intensity were both inversely related to tumor grade. The most relevant data was consistent with a negative staining of S-100 correlated with absence or decreased number of sustentacular cells in tumors grade III. This report indicates that the immunohistochemical panel has utility for the diagnosis of chemodectoma and the negative staining to CrA and S-100 markers in tumors grade III expresses an indication of malignant behaviour of the tumor.