Three-layered Feedforward artificial neural network with dropout for short-term prediction of class-differentiated Chl-a based on weekly water-quality observations in a eutrophic agricultural reservoir

To effectively manage a eutrophic reservoir, short-term predictions of algae class-differentiated chlorophyll a (Chl-a) were conducted. The study adopted a three-layered feedforward artificial neural network using discrete water environment datasets collected through weekly observations from May to November over seven years (2012–2018). This network was constructed using supervised learning, and the available datasets of a certain observation day were set as the input variables to determine the total Chl-a, Chlorophyceae Chl-a, and cyanobacteria Chl-a that would exist after one week. From the viewpoint of the simplification of the network’s complexity to suppress overfitting, input variables were carefully selected by identifying the important variables related to the seasonal changes in Chlorophyceae and cyanobacteria and eliminating the duplicated expressions of water-quality parameters. However, network downsizing was found insufficient to suppress overfitting. To improve prediction accuracy, dropout was introduced, which stochastically deactivated some nodes in the input and hidden layers in the learning process. The analysis results showed that sufficient short-term predictions of total Chl-a and Chlorophyceae Chl-a may be achieved. The insufficient prediction accuracy of cyanobacteria Chl-a may be overcome using meteorological data as close as possible to the desired prediction day. Consequently, this model may serve as a useful tool for the management of eutrophic reservoirs because short-term predictions of the dominant phytoplankton can be achieved, and the necessary mitigation measures may be accordingly planned.

     

Effect of calcium silicate on growth and dry matter yield of Chloris gayana and Sorghum sudanense under two soil water regimes

The effects of five rates [0 (control), 1, 2, 4 and 6 Mg ha^?1] of calcium silicate on the growth and water consumption by rhodes grass (Chloris gayana Kunth) and sudan grass (Sorghum sudanense Piper) under wet and dry soil water regimes (60 g and 30 g H₂O kg^?1 soil respectively) were evaluated in a pot experiment. The effect of the application of silicate on plant biomass was similar to that of the control. However, the shoot and root dry mass varied significantly (P < 0.001) according to the soil water regime and plant species. During the first cut, the shoot dry mass was 5.7 g per pot under the wet soil moisture regime, significantly exceeding that under the dry soil water regime proportionately by 0.68. For sudan grass, the shoot dry mass varied from 3.6 g per pot in the control to 4.3 g per pot in the treatment that received 6 Mg ha^?1 of calcium silicate. Plant water demand decreased as the rate of calcium silicate application increased, suggesting that an application of calcium silicate could reduce drought stress and enhance water economy. For the soil under study, the reduction in plant water demand represents a water saving ranging from 0.076 to nearly 0.20.     

Diurnal Variations in Photosynthesis,Stomatal Conductance and Leaf Water Relation in Sorghum Grown with or without Silicon under Water Stress

Sorghum [Sorghum bicolor (L.) Moench] was grown hydroponically with or without 50 ppm silicon (Si), and exposed to water stress from 10 days after sowing (DAS). At 15 and 23 DAS, we measured dry weight and diurnal variations in photosynthetic rate (P _N), stomatal conductance (g _s), transpiration rate (T), leaf water potential (ψ _L), and water uptake rate (23 DAS only). The reduction in dry weight at 23 DAS caused by water stress was ameliorated by silicon. Under water stress, silicon-treated seedlings showed higher g _s, P _N, and T than untreated ones. ψ _L remained almost constant within treatments throughout the daytime. Water uptake rate was reduced by water stress, but the reduction was ameliorated by silicon. We conclude that silicon enhanced water uptake and g _s, improving water supply to the leaves. These effects of silicon occurred soon after exposure to water stress.     

Assessment of biochemical and antioxidant diversities in a shallot germplasm collection from Vietnam and its surrounding countries

The shallot is considered an important genetic resource for Allium breeding programs because, compared to the bulb onion, the shallot contains higher levels of several functional chemical compounds. However, there may be differences in content, composition and beneficial activity among shallot landraces. This study was carried out to characterize the differences in phenolic, quercetin, sugar, S-alk(en)yl-l-cystein sulfoxide (ACSO), and saponin contents and antioxidant capacities of a shallot germplasm including 31 strains derived from different regions of Vietnam and six other countries. A wide variation was observed in the quantitative analyses of the chemical contents. Shallots with high contents of polyphenols, saponins, and quercetins were found in the south of Vietnam and other low-latitude countries. Meanwhile, those possessing fairly high ACSO and sugar contents were observed in the north of Vietnam. Qualitative analysis of saponins via thin layer chromatography did not show clear variation among shallot strains, but polymorphism was observed between the shallot and other Allium species, such as A. roylei. The principal component analysis could clearly discriminate shallot strains by their geographical origins. All shallot strains showed potent antioxidant activities in a DPPH assay. The highest antioxidant capacity was in the strains possessing relatively high contents of polyphenol, quercetin, and saponin. Significant correlations were found between antioxidant capacity (IC ₅₀ ^?1 ) and four groups of chemical compounds (polyphenols, quercetins, saponins, and ACSOs) (r = 0.40–0.59). A strong correlation was observed between IC ₅₀ ^?1 and quercetin contents (r = 0.59, p < 0.01). The six Fusarium-inoculated shallot strains seemed to be adequately resistant against disease, and the levels of resistance may be related to the saponin content in the bulb tissues.     

Chimeric inheritance of organelle DNA in variegated leaf seedlings from inter-subgeneric crossing of azalea

The inheritance of organelle DNA was investigated using PCR–RFLP markers in reciprocal cross combinations of inter-subgeneric azalea hybrids between evergreen azaleas (Rhododendron nakaharai and its hybrids) and fragrant deciduous azaleas (R. arborescens and R. viscosum) for the purpose of breeding fragrant evergreen azaleas. The hybrid progenies included green leaf, pale green leaf, variegated leaf and albino seedlings. Most viable green leaf seedlings had inherited ptDNA from the deciduous parent and non-viable albino and pale green leaf seedlings had inherited ptDNA from the evergreen parent. On the other hand, variegated leaf seedlings had chimerically inherited ptDNA from both parents. Their green leaf segments had ptDNA from the deciduous parent, and the pale green and white segments had biparental or maternal ptDNA depending on the progeny. In this study, we obtained interesting inter-subgeneric azalea hybrid progenies that had chimerically inherited organelle DNA and had different colored leaf segments corresponding to the composition of ptDNA from each parent. These results suggest that variegated leaf progenies with chimeric ptDNA from both parents can be subsistent, whereas albino seedlings resulting from plastome–genome incompatibility between the plastid genome from evergreen azalea and the nuclear genome from deciduous azalea are non-viable.     

Resistance to paraquat in Mazus pumilus

Mazus pumilus is an annual self‐pollinating weed that is commonly found in arable land, vegetable gardens and roadsides. This weed harbours insects and pathogens that attack vegetables. The mechanism of resistance to paraquat of M. pumilus found in Ohita, Japan, was studied. Whole plant bioassays revealed that the resistant (R) biotypes were four to six times less susceptible than controls. Chlorophyll destruction of leaf discs by paraquat treatment in R biotypes was 4–20 times lower than those of susceptible (S) biotypes. Ferric reducing antioxidant power (FRAP) values in R biotypes were higher than those of S biotypes before and after paraquat treatments. The activity of superoxide dismutase (SOD) was also higher in R biotypes than those of S biotypes before and after treatment with paraquat, but the activities of ascorbate peroxidase (APX) and catalase (CAT) were not different between R and S biotypes. Change of ascorbate (AsA) contents before and after paraquat treatment was equivalent in both biotypes. These results indicate that the increased SOD activity and antioxidant capacity in R biotypes contribute to the resistance to paraquat of M. pumilus.     

Novel method to reduce fishy aftertaste in wine and seafood pairing using alcohol-treated yeast cells

"Fishy aftertaste" is sometimes perceived in wine consumed with seafood. Iron in wine has been reported to be a key compound that produces fishy aftertaste. However, cost-effective methods to remove iron from wine have not been developed. Here, we describe a cost-effective and safe iron adsorbent consisting of alcohol-treated yeast (ATY) cells based on the observation that nonviable cells adsorbed iron after completion of fermentation. Treatment of cells with more than 40% (v/v) ethanol killed them without compromising their ability to adsorb iron. Drying the ATY cells did not reduce iron adsorption. Use of ATY cells together with phytic acid had a synergistic effect on iron removal. We term this means of removing iron the "ATY-PA" method. Sensory analysis indicated that fishy aftertaste in wine-seafood pairings was not perceived if the wine had been pretreated with both ATY cells and phytic acid.     

Effect of temperature on survival,growth and malformation of cultured larvae and juveniles of the seven-band grouper Epinephelus septemfasciatus

The effects of rearing temperature (23–29 °C) during the larval and juvenile stage on survival, growth and skeletal malformations in the seven-band grouper Epinephelus septemfasciatus were investigated. The survival rate of juveniles 30–40 mm in total length emerging from eggs was higher at 25 and 26 °C (0.1–1.3 %) than at 23 °C or 27–29 °C (0.004–1.5 %). Growth (increase in total length) was accelerated at higher temperatures. The frequency of malformed individuals was lower at 25–27 °C (36.0–61.5 %) than at 23, 28 or 29 °C (65.3–76.9 %). Specific incidences of spinal curvature and centrum fusion or defects in juveniles were not related to rearing temperature. However, incidences of twisted or compressed vertebrae (6.5–64.0 %) were higher at higher temperatures, while the incidence of bifurcated neural spine was significantly higher at 23 °C (43.6–54.4 %) than at other temperatures (3.3–22.7 %). The incidence rate of spinal curvature (23.3 %) was significantly higher in juveniles with a deflated swim bladder, regardless of rearing temperature. The results of this study suggest that the optimum culture temperature for seven-band grouper is 25–26 °C, collectively considering the survival, growth and incidences of abnormalities. Our results also demonstrate the significance of identifying the conditions for swim bladder inflation to prevent spinal curvature in seven-band grouper.     

Development of an on-site plum pox virus detection kit based on immunochromatography

Sharka disease, caused by plum pox virus (PPV), is the most serious viral disease of stone fruit trees. Among the eight known strains of the virus, PPV-D is the most important due to its recent global spread. Although enzyme-linked immunosorbent assay (ELISA) is the most common approach for diagnosing sharka, it involves time-consuming steps and requires expensive equipment and trained technicians. In this study, an on-site PPV detection kit based on immunochromatography was developed using polyclonal antibodies against the coat protein (CP) of a PPV-D isolate. The immunochromatographic (IC) assay kit was as sensitive as a commercial ELISA system for detecting Japanese PPV-D isolates. Moreover, it was easy to use (a one-step procedure), and results could be obtained on-site within 15 min without special laboratory equipment. The IC assay kit detected the virus from every aerial part of symptomatic Japanese apricot trees. In a detailed study of viral localization in leaves, the most suitable plant parts for use in the IC assay were symptomatic mesophyll tissues and the region from the petiole to the main vein. A positive reaction was also observed using the CP of other major (PPV-M and PPV-Rec) and minor (PPV-EA, PPV-W, and PPV-T) strains.     

A comparative analysis of two paddy irrigation schemes under contrasting water management of participatory and top-down systems in Uganda

Paddy and Water Environment - This research focused on two large-scale paddy irrigation schemes of Doho (1000&nbsp;ha) and Lwoba (700&nbsp;ha) in Uganda for a comparative analysis of major...