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Background
Kongyu 131 is an elite japonica rice variety of Heilongjiang Province, China. It has the characteristics of early maturity, superior quality, high yield, cold tolerance and wide adaptability. However, there is potential to improve the yield of Kongyu 131 because of the relatively few grains per panicle compared with other varieties. Hence, we rebuilt the genome of Kongyu 131 by replacing the GRAIN NUMBER1a (Gn1a) locus with a high-yielding allele from a big panicle indica rice variety, GKBR. High-resolution melting (HRM) analysis was used for single nucleotide polymorphism (SNP) genotyping.Results
Quantitative trait locus (QTL) analysis of the BC3F2 population showed that the introgressed segment carrying the Gn1a allele of GKBR significantly increased the branch number and grain number per panicle. Using 5 SNP markers designed against the sequence within and around Gn1a, the introgressed chromosome segment was shortened to approximately 430 Kb to minimize the linkage drag by screening recombinants in the target region. Genomic components of the new Kongyu 131 were detected using 220 SNP markers evenly distributed across 12 chromosomes, suggesting that the recovery ratio of the recurrent parent genome (RRPG) was 99.89%. Compared with Kongyu 131, the yield per plant of the new Kongyu 131 increased by 8.3% and 11.9% at Changchun and Jiamusi, respectively.Conclusions
To achieve the high yield potential of Kongyu 131, a minute chromosome fragment carrying the favorable Gn1a allele from the donor parent was introgressed into the genome of Kongyu 131, which resulted in a larger panicle and subsequent yield increase in the new Kongyu 131. These results indicate the feasibility of improving an undesirable trait of an elite variety by replacing only a small chromosome segment carrying a favorable allele.Sulfate-reducing bacteria (SRB) have received particular attention in the bioremediation of sediments contaminated with heavy metals. In this study, indigenous SRB were used to stabilize Cd in sediments spiked with different Cd concentrations (≤ 600 mg kg?1).
Materials and methodsThe study investigated the Cd leaching efficiency from sediments after 166 days (d) of biotreatment and assessed the bacterial community and bacteria relationship in sediments during SRB biostabilization.
Results and discussionThe study found that the Cd leaching efficiency of sediments was reduced by 18.1–40.3% (29.4 ± 8.7%) after 166 days of biotreatment. During the biostabilization, the bacterial community in sediments significantly changed, particularly after 61 days of biotreatment. At the family level, the identified dominant bacteria (mean abundance > 3%) included Bacillaceae, norank Nitrospira, Anaerolineaceae, Nitrospinaceae, Streptococcaceae, and Hydrogenophilaceae. The study also speculated the complex relationships between these bacteria. The relative abundance of Desulfobacteraceae and Desulfobulbaceae in sediments was enhanced after biotreatment. Bacillaceae and Streptococcaceae may play a negative role in Cd biostabilization and inhibited SRB biological activity. However, Anaerolineaceae and Hydrogenophilaceae may have commensalism and mutualism relationships, respectively, with typical SRB. The presence of Nitrospinacea and norank Nitrospira may reduce the inhibitive effect of denitrifying bacteria on SRB, thereby exhibiting a positive effect on biologic sulfate reduction and Cd biostabilization.
ConclusionsIndigenous SRB treatment increased Cd stability in sediments and changed bacterial community. During SRB biostabilization, complex relationships between bacteria in sediments were speculated, including competition, syntrophism, and antagonism. These results provide insights for better regulating and controlling SRB biostabilization.
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