To pool or not to pool? Guidelines for pooling samples for use in surveillance testing of infectious diseases in aquatic animals

Samples from multiple animals may be pooled and tested to reduce costs of surveillance for infectious agents in aquatic animal populations. The primary advantage of pooling is increased population‐level coverage when prevalence is low (<10%) and the number of tests is fixed, because of increased likelihood of including target analyte from at least one infected animal in a tested pool. Important questions and a priori design considerations need to be addressed. Unfortunately, pooling recommendations in disease‐specific chapters of the 2018 OIE Aquatic Manual are incomplete and, except for amphibian chytrid fungus, are not supported by peer‐reviewed research. A systematic review identified only 12 peer‐reviewed aquatic diagnostic accuracy and surveillance studies using pooled samples. No clear patterns for pooling methods and characteristics were evident across reviewed studies, although most authors agreed there is a negative effect on detection. Therefore, our purpose was to review pooling procedures used in published aquatic infectious disease research, present evidence‐based guidelines, and provide simulated data examples for white spot syndrome virus in shrimp. A decision tree of pooling guidelines was developed for use by peer‐reviewed journals and research institutions for the design, statistical analysis and reporting of comparative accuracy studies of individual and pooled tests for surveillance purposes.     

Reponses of mamey sapote (Pouteria sapota) trees to continuous and cyclical flooding in calcareous soil

Physiological and growth responses of ‘Pantin’ and ‘Magana’ mamey sapote (Pouteria sapota) trees to continuous and cyclical flooding were studied in a series of experiments. Trees were grown in containers in a very gravelly loam soil and were subjected to continuous flooding of the root zone for 30–66 days (Experiments 1 and 2) or alternating flooding–unflooding cycles for 50 days (Experiments 3–5). For all experiments, the control treatment consisted of nonflooded trees. Net CO₂ assimilation (A) and stomatal conductance (g_s) decreased within 3 days of continuous flooding and internal CO₂ concentration was significantly higher in leaves of flooded than nonflooded plants. In the cyclic flooding experiments, trees were flooded in 3- to 6-day cycles and then unflooded for the same time periods. Stomatal conductance and A decreased within 3 days of flooding, leaf epinasty occurred between days 5 and 10, leaf senescence and abscission occurred between days 15 and 30, and branch dieback and tree death occurred between days 30 and 60. Three cycles of 3-day flooding and 3-day recovery of trees had little effect on leaf gas exchange of ‘Magaña’ trees. Similarly, ‘Pantin’ trees survived 3 cycles of 6 days of flooding interspersed with 3–6 days of recovery despite consistent decreases in g_s and A during flooding. Stomatal conductance and A of both mamey sapote cultivars decreased within a few days of flooding and this species appears to have intermediate flooding tolerance compared with other tropical fruit crops based on tree survival.     

The socioeconomics and management of Santiago de Chile''s public urban forests

Santiago, Chile's semi-arid climate and urbanized environment poses a severe limitation for the establishment and maintenance of urban forests. Municipalities, or comunas, are the main stakeholders in the management of Santiago's public urban forests. A tenable hypothesis would be that as the socioeconomic level of a comuna increases, the better the condition of a comuna's urban forest. Unfortunately, there is little comprehensive information on management, public expenditure, and structure of Santiago's public and private urban forests. To examine this hypothesis, Santiago was divided into socioeconomic strata, then using air photo interpretation and stratified field sampling, urban forest structures were quantified by socioeconomic strata. In addition, interview surveys were used to determine municipal urban forest management and expenditures for different public urban forests based on socioeconomic strata. Urban forests in the high socioeconomic strata had fewer public trees, greater tree cover, tree and leaf area density, and leaf area index than lower socioeconomic strata. The percentage of total municipal budget allocated to public urban forest management was consistent among strata, but the total public urban forest budgets were greater in the high socioeconomic strata. Public urban forest structure is related to the socioeconomic strata of Santiago's different comunas.     

Water savings, nutrient leaching, and fruit yield in a young avocado orchard as affected by irrigation and nutrient management

This project was designed to determine the effect of fertilizer rate and irrigation scheduling on water use, nutrient leaching, and fruit yield of young avocado trees (Persea americana Mill. cv. Simmonds). Seven nutrient and irrigation management practices were evaluated: (1) irrigation based on crop evapotranspiration (ET) with 50% fertilizer at a standard rate (FSR); (2) ET irrigation with FSR (typical for avocado production in the area); (3) ET irrigation with 200% FSR; (4) irrigation based on exceedance of 15-kPa (SW) soil water suction with 50% FSR; (5) SW with FSR; (6) SW with 200% FSR; and (7) irrigation at a set schedule (based on timing and frequency typically used in local avocado production) with FSR. The SW with FSR treatment saved 87% of the water volume applied and reduced total phosphorus leached by 74% compared to the set schedule irrigation with FSR. The SW with FSR treatment had higher avocado fruit production, tree water-use efficiency, and fertilizer-use efficiency than the other six treatments. Thus, the use of soil water monitoring for irrigation management can substantially increase sustainability of young avocado orchards in southern Florida.     

Acceptability of pesticide impacts on the environment: what do United Kingdom stakeholders and the public value?

EU Directive 91/414/EEC requires there to be no unacceptable effects on the environment from the use of pesticides. This paper reports the views of direct stakeholder groups and results from an opinion survey of more than 2000 members of the general public on what in practice should constitute acceptable and unacceptable effects of pesticides. Stakeholders in focus groups were concerned with the potential effects of pesticides on animal and plant population viability and micro-organism function but recognized that a trade-off exists between the potential economic advantages of responsible pesticide use and the potential disadvantages of individual poisoning events. The public opinion survey showed that although pesticides are widely used in homes and gardens, their use on farm crops remains of concern to the public. Concerns are greatest on issues of human health and food quality but potential environmental effects are also an issue for a substantial number of people, particularly if attractive species could be affected.     

Determination of Canine Factor VIII-related Antigen Using Commercial Antihuman F VIII Serum

Factor VIII-related antigen (F VIII:AGN) in 21 canine plasma samples was assayed by immunoelectrophoresis using a rabbit anticanine F VIII serum prepared from a canine F VIII concentrate and a commercial rabbit antihuman F VIII serum. A good correlation existed (r value 0.916) between the antigen levels obtained using the two sera. In normal dogs the plasma F VIII:AGN level was 95 +/- 39% (Mean +/- SD) compared to 175 +/- 40% in dogs with severe hemophilia A and 17 +/- 15% in dogs with von Willebrand's disease. It was concluded that there was sufficient cross reactivity between canine F VIII and commercial rabbit antihuman F VIII serum to make the latter useful in the differential diagnosis of F VIII deficiencies in the dog.