Bird species abundance–occupancy patterns and sensitivity to forest fragmentation: Implications for conservation in the Brazilian Atlantic forest

Developing a predictive theory for species responses to habitat fragmentation is a large, complex challenge in conservation biology, and meeting this challenge likely requires tailoring predictions to specific habitats and taxa. We evaluate the effects of fragmentation on forest birds living in three distinct forest ecosystems found in Brazilian Atlantic forest: seasonal semi-deciduous forest (SF), mixed rain forest (MF), and dense rain forest (DF). We test the hypotheses that (1) bird species most prevalent in SF (relative to other habitat types) will be least vulnerable to population declines in fragmented SF, and (2) species with stronger affiliations with DF or MF will be relatively more sensitive to fragmentation in SF. Using an exploratory statistical technique called “Rank Occupancy–Abundance Profiles (ROAPs),” we compared distribution and abundance of birds among large “continuous” areas of each forest type, then compared abundances in continuous SF forests with patterns of abundance in small fragments of SF, where edge effects could play a marked role in population dynamics. Overall, 39 species showed substantially lower local abundance, occupancy, or both in SF fragments versus continuous SF. As predicted, a higher proportion of bird species associated with DF appeared sensitive to fragmentation in SF; by contrast, species most abundant in SF and MF were similarly abundant in fragmented SF. Our study demonstrates how quantifying distribution and abundance in diverse habitats may enhance managers’ ability to incorporate species-specific responses to human disturbances in their conservation plans, and points out ways that even small reserves may have significant conservation value.     

Allocation patterns and phenology in wild and selected accessions of annual and perennial Physaria (Lesquerella, Brassicaceae)

Two processes that determine a good performance of plants in arid environments are phenology and resource allocation patterns. With a longer growing season and larger allocation to root, perennials achieve better access to resources and are more resilient to stresses than annuals. In traditional agricultural systems selection for optimal soil nutrient uptake has been a secondary breeding objective, because crops receive subsidies of water and fertilizers. However in arid lands, caution is required during domestication, to avoid changes in structural traits which may be the basis for sustainable production. Due to inherent differences in hierarchy among annual and perennial species, we propose that the changes in phenology and allocation brought about by selection will depend on the life cycle. We performed field studies comparing wild and selected accessions of annual and perennial species of Physaria. Life cycle determined the functional basis of seed yield. In annuals, selection resulted in early anthesis (1 week earlier), a lower allocation to roots and leaves (twofold lower), and an increase in harvest index (an increase of 62%). Selected perennials had higher biomass at maturity (45% higher), linked to a longer reproductive period (3 weeks longer) than their wild relatives. The vegetative allocation found in wild perennials remained unchanged after selection. While annuals selected for seed yield could compromise the capacity for acquisition of resources, selection in perennials did not modify the allocation strategy responsible for their positive adjustment to low resource environments. We found a trade off between seed yield potential and yield stability that resulted in lower performance of selected accessions in low quality environments in relation to their wild relatives.     

Problems related to seed production in the African region

Improved seeds can make a substantial contribution to agricultural productivity in African countries. Seeds are one of the most important sources of innovation, particularly in resource-constrained small farm environments. They carry the genetic potential of the crops, determining the upper limit on yield and, therefore, the ultimate productivity of other inputs. Furthermore, new roles for seeds are rapidly recognized all over the world for the delivery systems of many innovative biotechnological products and as carriers of plant protection chemicals, biologicals and growth regulators. The seed sector development in Africa varies considerably among countries. Rather effective and diversified seed industries have slowly emerged and are operational in a few countries (e.g. Egypt, Kenya, Zimbabwe). In a growing number of other countries (e.g. Malawi, Zambia) the seed production and supply system has developed reasonably well in some areas for some crops. However, in most countries (e.g. Cameroon, Ethiopia, Ghana, Tanzania and Uganda) progress has been very limited in spite of investments and assistance. During the last decade a number of countries have undergone privatisation and/or seed market liberalisation as potential solutions to under-performance in the seed sector. However, it is not certain that this will produce a practical improvement and solve the problems of the poor rural majority of the population. In this paper the main problems related to the seed sector in Africa are discussed together with the possible roles of the private and public sectors in developing and maintaining an efficient and active seed industry. This revised version was published online in July 2006 with corrections to the Cover Date.     

Isolation and partial characterization of a pectic polysaccharide from the fruit pulp of Spondias cytherea and its effect on peritoneal macrophage activation

The total carbohydrate content of the intact pulp of Spondias cytherea was 41%. Polysaccharides were obtained via hot aqueous extraction after defatting with organic solvents. The aqueous extract was treated with excess ethanol to form a precipitate, which was then solubilized in water. The material precipitated upon acidification when HCl was removed. The resulting supernatant fraction was submitted to freeze-thawing treatment yielding a soluble fraction (sFTS). This fraction had Ara, Rha, Gal and GalA in its structure as determined by GC-MS. 13C NMR analysis showed signals assigned to alpha-L-Araf, beta-D-Galp, alpha-D-GalpA and alpha-L-Rhap units, in addition to galacturonic acid units, which were present also as methyl ester. These results suggest a type I rhamnogalacturonan with arabinogalactan branches. Cell eliciting activity in a dose-depending pattern was observed in vitro on peritoneal macrophages treated with sFTS.     

Usefulness of volunteer data to measure the large scale decline of “common” toad populations

Measuring a species decline is pivotal to evaluate their conservation status, but an accurate assessment of demographic trends requires observations collected across broad spatial and temporal scales. Volunteers can help to collect information over large scales, but their data may be affected by heterogeneity for sampling efforts and protocols, which may influence detection probability. Ignoring this issue may conduct to misleading conclusions. Here we show that data collected by different volunteer groups can be integrated with measures of sampling efforts, to obtain information on large scale demographic trends. We collected data on 33 common toad (Bufo bufo) populations across Italy for the period 1993–2010. We used two approaches (meta-analysis; analysis of average change in population size) to evaluate the overall demographic trend. We incorporated measures of volunteer sampling efforts into analyses, to take into account changes in detection probability. Toad abundance significantly declined in the last decade. From 2000 to 2010, 70% of populations showed a strong decline, and only 10% increased. Trends were heterogeneous among populations, but taking into account sampling effort reduced heterogeneity by 40%. We detected a 76% cumulative average decline of toad populations, despite an increasing mean sampling effort. The widespread toad decline rises concern for its future, also because the causes remain unclear. Volunteer data can be extremely useful to identify large scale population trends, if information on sampling effort are recorded and used to adjust counts.     

Structure of genetic diversity among common bean (<Emphasis Type="Italic">Phaseolus vulgaris</Emphasis> L.) varieties of mesoamerican and andean origins using new developed microsatellite markers

A common bean genomic library was constructed using the ‘IAC-UNA’ variety enriched for (CT) and (GT) for microsatellite motifs. From 1,209 sequenced clones, 714 showed microsatellites distributed over 471 simple and 243 compound motifs. GA/CT and GT/CA were the most frequent motifs found among these sequences. A total of 123 microsatellites has been characterized. Out of these, 87 were polymorphic (73.7%), 33 monomorphic (26.8%), and 3 (2.4%) did not amplify at all. In a sample of 20 common bean materials selected from the Agronomic Institute Germplasm Bank, the number of alleles per locus varied 2–9, with an average of 2.82. The polymorphic information content (PIC) of each marker varied from 0.05 to 0.83, with a 0.45 average value. Cluster and principal coordinate analysis of the microsatellite data were consistent with the original assignment of the germplasm accessions into the Andean and Mesoamerican gene pools of common bean. Low polymorphism levels detected could be associated with the domestication process. These microsatellites could be a valuable resource for the bean community because of their use as new markers for genetic studies. Electronic supplementary material The online version of this article (doi: ) contains supplementary material, which is available to authorized users. An erratum to this article can be found at