Prokaryotic diversity--magnitude,dynamics, and controlling factors

There are probably millions of species in the microorganismal domains Bacteria and Archaea (the prokaryotes), and we are only just beginning to work out the basic principles governing their distribution and abundance in natural environments. One characteristic that has become clear is that prokaryote diversity in aquatic environments is orders of magnitude less than in sediments and soils. Hypotheses and models explaining such differences are under development and are beginning to offer promising insights into the mechanisms governing prokaryote diversity and ecosystem function.     

No signs of thermal acclimation of heterotrophic respiration from peat soils exposed to different water levels

In a mesocosm experiment, with bare peat soils exposed to different water levels (WL), we examined whether heterotrophic respiration (R_h) acclimated to a 3 ^°C temperature increase. Across all WLs, R_h at 15 ^°C was never lower in the heated treatment than in the unheated treatment, indicating that R_h did not acclimate to the warmer conditions. We hypothesize that this lack of thermal acclimation is due to the unlimited substrate availability in these organic soils. These results imply that peat soils may exhibit a sustained positive feedback to global warming.     

Association between management practices and within-herd prevalence of Cryptosporidium parvum shedding on dairy farms in southern Ontario

To identify management practices associated with an increased within-herd prevalence of Cryptosporidium parvum shedding on dairy farms in southern Ontario, fecal samples were taken from 1089 calves aged 7-28 days, from 119 herds. Information on management practices was obtained by administering a questionnaire compiled using a modified Delphi technique. Data were analyzed using univariable and multivariable negative binomial regression. Overall, 30% of the calves in the study were shedding C. parvum oocysts, with at least one positive calf detected in 77% of herds. Within-herd prevalence ranged from 0 to 80%. Predictors significantly associated with an increased prevalence of shedding in multivariable modelling were the use of calf scour prophylaxis in cows (risk ratio [RR] 1.70, P<0.01) and calves (RR 1.38, P=0.02) and the feeding of milk replacer in the first week of life (RR 1.40, P=0.02). In contrast, the presence of concrete flooring in calf housing areas (RR 0.59, P<0.01) and the use of soap or detergent when washing calf feeding utensils (RR 0.61, P<0.01) appeared to be protective.     

Resistance of wheat pathogen Zymoseptoria tritici to DMI and QoI fungicides in the Nordic-Baltic region - a status

Septoria tritici blotch (STB) caused by the ascomycete Zymoseptoria tritici (Z. tritici) is currently the most prevalent foliar disease in wheat in the Nordic-Baltic region. Fungicide availability in this region differs greatly and is generally more limited than in other European regions. Monitoring of fungicide sensitivity is an essential tool to survey changes in fungal populations in order to react and be able to adapt recommendations for fungicide use. In this study the authors give an overview of the current situation of 14α-demethylation inhibitor (DMI) and quinone outside inhibitor (QoI) sensitivity of Z. tritici from Scandinavia and the Baltic countries. A total of 985 isolates from the Nordic-Baltic region were investigated for EC₅₀ of DMI epoxiconazole and prothioconazole. Fungicide sensitivity remains at a high level with values ranging from 0.07 to 0.48 mg L^?1 for epoxiconazole and 1.17 to 9.47 mg L^?1 for prothioconazole. Point mutation I381V in the DMI target gene CYP51 was dominant throughout the region, but mutations D134G, V136A/C and S524T were also detected in the population in 2014. Screening for inserts in the CYP51 promoter region revealed that a ~ 1000 bp insert is predominant in the entire region. Only a single isolate was found in Denmark, harbouring the 120 bp insert, known to reduce fungicide sensitivity. Two Danish isolates which had elevated resistance levels were associated with an enhanced efflux. Significant differences were found across the area for the presence of G143A, conferring QoI resistance. As there is only limited access to results from this area, these findings can serve as reference for future fungicide sensitivity investigations and for evaluation of changes in the Northern European Z. tritici population.     

Population structure and frequency differences of CYP51 mutations in <Emphasis Type="Italic">Zymoseptoria tritici</Emphasis> populations in the Nordic and Baltic regions

Septoria tritici blotch caused by the fungus Zymoseptoria tritici (formerly Mycosphaerella graminicola) is one of the most yield-reducing diseases worldwide. Effective disease management involves the use of resistant cultivars and application of fungicides. In this study, the population structure and genetic diversity of 183 Z. tritici isolates from Denmark, Sweden, Finland and the Baltic countries were analysed by molecular markers. In population structure analysis, isolates from Denmark and Sweden were grouped together, whereas isolates from the Baltics and Finland were grouped together. Analysis of genetic diversity and ?-values confirmed the division of Nordic and Baltic regions. Danish isolates sampled from different regions and different varieties were not genetically different. However, significant genetic differences were detected between isolates sampled from different years in Denmark and for isolates sampled from specific cultivars in different years. Additionally, the frequency of several known point mutations in the gene cyp51, conferring decreased sensitivity to DMI fungicides, was investigated. Several of the examined mutations were detected at a lower frequency in Baltic isolates compared to Danish and Swedish isolates. Analysis of the Danish population revealed a significant increase in specific mutations over the years. Lastly, some mutations were significantly more frequent in isolates derived from certain varieties. By using different resistance sources in breeding programmes and application of a wide range of fungicides, a sustainable and efficient disease management can be obtained.     

<Emphasis Type="Italic">Pectobacterium carotovorum</Emphasis> subsp. <Emphasis Type="Italic">brasiliensis</Emphasis> causing blackleg on potatoes in South Africa

In South Africa during the 2006/2007 potato growing season, outbreaks of blackleg occurred, causing severe economic losses in commercial potato production fields. Symptoms were initially observed on only one stem per plant, on which the top leaves rolled upwards, wilted and became necrotic. As symptoms progressed to the lower leaves with subsequent leaf desiccation, a light to dark brown discolouration of the vascular system at the stem base developed, followed by external darkening. Under prevailing wet and humid conditions stems became slimy and pale. In the stems, the pith became necrotic and hollow. These symptoms were similar to those described in Brazil, where the causal agent was identified as a new subspecies, Pectobacterium carotovorum subsp. brasiliensis (Pbcb). Isolations from plants showing typical blackleg symptoms were made on CVP medium. Sequences and phylogenetic analysis of the partial 16S–23S rDNA intergenic spacer region indicated that the isolates were Pbcb. Comparison of PCR-RFLP patterns of the 16S–23S rDNA of isolates to reference cultures confirmed the identity of the South African blackleg strains as Pbcb, identical to strain 8 isolated in Brazil. This is the first report of Pbcb in South Africa and it appears to be the most important causal agent of blackleg in South Africa. The disease poses a major potential threat to the South African potato industry especially in terms of seed exports, tuber quality and yield.     

Relating Leaf Nutrient Status to Fruit Quality Attributes in Litchi cv. ‘Mauritius’

Litchi (Litchi chinensis Sonn.) ‘Mauritius’ is a popular export cultivar due to its attractive red color and excellent fruit quality. Three orchards were selected based on planting distance and routine pruning practices followed by each growing season. Orchards A and B are essentially similar regarding these production practices, whereas orchard C had overlapping canopies due to lack of routine pruning practices after each growing season and short planting distance. Canonical variate analysis was used as a statistical tool to compare fruit quality attributes from different orchards (A, B, and C) in terms of physical, chemical and sensory parameters and correlating to leaf nutrient status. The correlations and plot of loadings of the variates indicated that skin color (visual), color values (chroma and hue angle, h°), fruit weight, firmness, and consumer acceptability were the main factors that discriminated orchard C from the other two orchards. The soluble solids concentrations, titratable acidity and fruit taste were the quality attributes discriminating orchard A from orchard B. The relationship between the leaf nutrients and fruit quality attributes showed positive relationships between leaf potassium (K) and anthocyanin content and titratable acidity (TA); leaf phosphorus (P) and pericarp h°, leaf nitrogen (N) and fruit weight; leaf calcium (Ca) and fruit firmness.     

The 1949 Atlas of French peat deposits,a starting point for a national inventory of peatlands

Fifty per cent of European peatlands are in a damaged state. While intact peatlands are natural carbon sinks, degraded sites release important amounts of greenhouse gases into the atmosphere, contributing to global warming. Restoration of the hydrological functionality of peatlands has proved to be an efficient tool to avoid these emissions. In France, Tuffnell & Bignon's ministerial report (2019) emphasized the need for peatlands ‘integration into the National Low Carbon Strategy, targeting carbon neutrality by 2050. However, current knowledge regarding French peatlands’ distribution and carbon stocks is insufficient and does not allow decision makers and managers to prioritize areas for restoration. The most complete database to date is the 1949 Atlas, an inventory of exploitable peat deposits that was conducted during WWII for peat exploitation as fuel. Until its digitalization, the latter database was archived and never used in a scientific study. It provides detailed information about peatland surfaces, peat thicknesses and carbon contents at that time. We estimated peat carbon stocks from French peatlands to be 111 Mt C in 1949 for 63,290 ha identified as peaty sites, the equivalent of 3% of the organic carbon contained in the upper 30 centimetres of French soils. 34% of this stock was held in Lower Normandy (37.7 Mt C) and 12% in the Picardy's region (13.0 Mt C), in large lowland peatlands. However, not all peatlands were prospected in the 1949 inventory and the characteristics of the prospected peatlands may have changed with anthropic disturbances of the last decades, such as draining or climate change. These first results highlight the need for a recent inventory of French peatlands and carbon stocks based on local data aggregation. Data from the 1949 Atlas could help constituting this new inventory but should be validated before being used to describe the present.     

Heads you win,tails you lose: Life‐history traits predict invasion and extinction risk of the world's freshwater fishes

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