Three types of proteinases in Japanese common squid Todarodes pacificus hepatopancreas as studied by using carp myofibrils as substrate

Three types of proteinases, namely cysteine, metallo, and serine proteinases, were found in squid hepatopancreas by studying the inhibition spectra using carp myofibril as substrate. The cysteine, metallo, and serine types showed the highest activities at 50, 35, and 40°C, respectively. The optimal pHs were 5, 7, and 9 for the cysteine, metallo, and serine types, respectively. When assayed at 20°C and pH 7.5, the metallo type showed the highest activity. The metallo type was characterized by a high selectivity in the digestion of myosin. Among the three enzymes, the cysteine type was found to be the most stable against thermal and acid treatments. Heat-treated myofibrils were more susceptible to the cysteine and serine types, but less susceptible to the metallo type. Acid treatment of myofibrils also enhanced the digestibility by the cysteine type. The results indicated that the cysteine type seemed to be the most suitable enzyme to produce peptides from denatured myofibrils by their random digestion.     

Stabilizing effect of Ca<Superscript>2+</Superscript> on myosin and myofibrils of squid mantle muscle as affected by heating conditions

The suppressive effects of Ca²⁺ on the thermal denaturation of myosin and myofibrils of squid mantle muscle were compared. The stabilization effect on myosin was smaller than that on myofibrils and was not affected by KCl concentration. The stabilizing effect of Ca²⁺ on myosin decreased as the heating temperature dropped, showing no stabilization at 20°C, while the effect on myofibrils was the same at all temperatures tested. The stabilizing effect of Ca²⁺ on myosin disappeared even at 30°C in the presence of sorbitol, where a small inactivation rate was found, while the effect of Ca²⁺ on myofibrils was equally detected irrespective of the reduction in inactivation rate in the presence of sorbitol. Stabilization of myosin by Ca²⁺ again appeared even in the presence of sorbitol when the heating temperature was raised to 38°C. It was suggested that Ca²⁺ confers stabilization on myosin only when myosin is under unstable conditions. The stabilization effect of Ca²⁺ on myosin was enhanced upon F-actin binding: Ca²⁺-bound myosin was more significantly stabilized by F-actin binding, and the effect was no longer affected by the conditions for heating.     

Assessment and mapping of soil erosion risk by water in Tunisia using time series MODIS data

Soil erosion by water is a common environmental problem which can affect the sustainable development and the agriculture of developing countries especially. Therefore, several countries, threatened by this phenomenon, adopt different measures to preserve and protect their natural resources. The main purpose of this study was to identify vulnerable areas to establish a soil erosion risk map in Tunisia. In order to do so, an approach based on a combination of the Revised Universal Soil Loss Equation (RUSLE) as an erosion model, Geographic Information System (GIS) and Remote Sensing was applied. RUSLE, which is a model to predict soil loss, is composed of five factors. Erosivity factor (R factor), erodibility factor (K factor), topography factor (LS factor), crop management factor (C factor), and supporting practices factor (P factor). Furthermore, in order to get the most accurate C factor for each land use, times series Moderate Resolution Imaging Spectroradiometer Enhanced Vegetation index (MODIS-EVI) were used. MODIS-EVI time series was helpful for distinguishing vegetation dynamics with taking into account phenological variation of the crops. The results indicated that Tunisia has a serious risk of soil erosion. Indeed, about 24.57% of our study area had a soil loss rate more than 30 t/ha. In these areas, suitable and urgent measures and treatments should be required. Finally, this approach which is based on remote sensing techniques, GIS and erosion model can be useful for planning appropriate environmental decision-making policy in a global scale.     

不同种类与浓度的阴离子对菠菜镉吸收的影响

通过盆栽试验,研究了不同种类与浓度的阴离子（Cl-, SO42-）以及不同镉（Cd）水平对菠菜镉吸收的影响。结果表明,随着土壤中Cd浓度的增加,菠菜中的Cd浓度也随之增加。施Cd 1 mg/kg处理,菠菜中Cd浓度是对照的11～17倍;而施Cd 5 mg/kg处理,菠菜中Cd 浓度是对照的10～43倍。增施Cl- 可使土壤溶液中镉浓度增加,进而提高菠菜中镉浓度。施Cl- 5与10 mmol/kg,菠菜中Cd浓度分别为对照的1.45倍与2.31倍。施SO42-处理,则会降低菠菜中Cd浓度。施SO42- 5 mmol/kg ,Cd浓度仅为对照的0.77倍。土壤溶液中的Cd浓度与Cl- 浓度呈显著正相关。     

Effect of Cryoprotectants on Suppression of Protein Structure Deterioration Induced by Freeze-thaw Cycle in Pacific White Shrimp

This study aimed to elucidate the changes in Pacific white shrimp (Litopenaeus vannamei) myofibrillar protein as influenced by multiple freeze-thaw cycles as well as the stabilization effects of sucrose and trisodium citrate on shrimp myofibrils. Shrimp myofibrils in 0.1 M NaCl, 20 mM Tris-HCl (pH 7.5) were mixed individually with sucrose and citrate at concentrations of 0.05 M and were evaluated for Ca²⁺-ATPase activity, salt solubility, total and reactive sulfhydryl, and surface hydrophobicity during three freeze-thaw cycles. Sucrose and citrate had strong cryoprotective effects against freeze denaturation by retaining higher Ca²⁺-ATPase activity and salt-soluble myosin and actin, by slowing the reduction of reactive sulfhydryl (SH) and by exposing less hydrophobic groups at the surface of the protein compared with the no-additive sample. Results indicated that both cryoprotectants had suppressive effect against protein denaturation and helped stabilize white shrimp myofibrillar protein during the freeze-thaw process. This study suggests that sucrose and citrate stabilized the protein structure by retarding the unfolding of protein; thus, the native protein could be protected during frozen storage.     

Genetic characterization of rainfed upland New Rice for Africa (NERICA) varieties

A total of 18 rainfed upland New Rice for Africa (NERICA) varieties were categorized as the heavy panicle and low tillering types and early heading, in compared with 32 different varieties. These chromosome components were clarified using 243 SSR markers which showed polymorphism among NERICA varieties and their parents, CG 14 (O. glaberrima Steud.) and one of the recurrent parents, WAB-56-104 (O. sativa L.). NERICA varieties were classified into three groups, which corresponded with these parents’ continuation including two exceptions, NERICAs 14 and 17, by a cluster analysis using polymorphism data of SSR markers and 14 differential markers among them were selected to classify NERICA varieties. However, three groups: NERICAs, 3 and 4, NERICAs, 8, 9 and 11 and NERICAs, 15 and 16 were not distinguishable. Association analysis was carried out for characterization of NERICA varieties by using SSR markers genotype and phenotype of agronomic traits. A total of 131 quantitative trait loci between SSR markers and 11 agronomic traits were detected. The characteristics of early maturity and heavy panicle of upland NERICA varieties were succeeded from Asian rice varieties and the characteristics of high dry matter production and late heading were introduced from CG 14 and the other varieties.     

Biodegradation of methylthio-s-triazines by Rhodococcus sp. strain FJ1117YT, and production of the corresponding methylsulfinyl, methylsulfonyl and hydroxy analogues

A novel bacterial strain FJ1117YT was isolated from an enrichment culture with the herbicide simetryn. The isolate was capable of degrading the herbicide supplied as the sole sulfur source in an aquatic batch culture. The strain FJ1117YT was identified as that belonging to Rhodococcus sp. on the basis of comparative morphology, physiological characteristics and comparison of the 16S rRNA gene sequence. The biodegradation pathway of simetryn was established by isolating the methylsulfinyl analogue as the first metabolite and by identification of the methylsulfonyl intermediate and the hydroxy analogue by liquid chromatography-mass spectrometry (LC-MS) and/or nuclear magnetic resonance (NMR) analysis. The results indicate that the methylthio group was progressively oxidised and hydrolysed by the strain FJ1117YT. The same strain is also able to metabolise other methylthio-s-triazines such as ametryn, desmetryn, dimethametryn and prometryn through similar pathways.     

Isolation and characterization of a novel simazine-degrading beta-proteobacterium and detection of genes encoding s-triazine-degrading enzymes

A moderately persistent herbicide, simazine, has been used globally and detected as a contaminant in soil and water. The authors have isolated a simazine-degrading bacterium from a simazine-degrading bacterial consortium that was enriched using charcoal as a microhabitat. The isolate, strain CDB21, was gram-negative, rod-shaped (0.5-0.6 microm x 1.0-1.2 microm) and motile by means of a single polar flagellum. Based on 16S rRNA sequence analysis, strain CDB21 was identified as a novel beta-proteobacterium exhibiting 100% sequence identity with the uncultured bacterium HOClCi25 (GenBank accession number AY328574). PCR using primers that were specific for the genes of the atrazine-degrading enzymes (atzABCDEF) of Pseudomonas sp. strain ADP showed that strain CDB21 also possessed the entire set of genes of these enzymes. Nucleotide sequences of the atzCDEF genes of strain CDB21 were 100% identical to those of Pseudomonas sp. strain ADP. Sequence identity of the atzA genes between these bacteria was 99.7%. The 398-nucleotide upstream fragment of the atzB gene of strain CDB21 was 100% identical to ORF30 of Pseudomonas sp. strain ADP, and the 1526-nucleotide downstream fragment showed 99.8% sequence similarity to the atzB gene of the pseudomonad.     

Species-specific thermal denaturation pattern of fish myosin when heated as myofibrils as studied by myosin subfragment-1 and rod denaturation rates

Thermal denaturation of myofibrils from various species of fish was investigated by measuring ATPase inactivation, myosin aggregation, myosin subfragment-1 (S-1) and rod denaturation rates as studied by chymotryptic digestion. Decrease in monomeric myosin (myosin aggregation) was always faster than the ATPase inactivation for all myofibrils tested. The relative denaturation rate of rod to that of S-1 differed from species to species. Preceded denaturation of rod was observed with some species, and the opposite was true with other species. The denaturation pattern was explained by the different magnitude of S-1 stabilization by F-actin in myofibrils at low salt medium. Myofibrils which receive a great stabilization by F-actin as studied by ATPase inactivation showed the preceded rod denaturation pattern, and vice versa. S-1 portion, not F-actin, determined the different stabilization of S-1 by F-actin in myofibrils.