Equal performance of TaqMan, MGB, molecular beacon, and SYBR green-based detection assays in detection and quantification of roundup ready soybean

We have tested and compared the performance of 12 different assays representing four different real-time polymerase chain reaction (PCR) chemistries in the context of genetically modified organism detection. Several different molecular beacon, SYBR Green, TaqMan, and MGB assays were designed for the event specific detection and quantification of the 3' integration junction of GTS 40-3-2 (Roundup Ready) soybean. Sensitivity as well as robustness in the presence of background DNA were tested. None of the PCR-based approaches appeared to be significantly better than any of the other, but the molecular beacon assays had the lowest efficiency and also seemed more sensitive to changes in experimental setup.     

Influence of larval transport and temperature on recruitment dynamics of North Sea cod (Gadus morhua) across spatial scales of observation

The survival of fish eggs and larvae, and therefore recruitment success, can be critically affected by transport in ocean currents. Combining a model of early‐life stage dispersal with statistical stock–recruitment models, we investigated the role of larval transport for recruitment variability across spatial scales for the population complex of North Sea cod (Gadus morhua). By using a coupled physical–biological model, we estimated the egg and larval transport over a 44‐year period. The oceanographic component of the model, capable of capturing the interannual variability of temperature and ocean current patterns, was coupled to the biological component, an individual‐based model (IBM) that simulated the cod eggs and larvae development and mortality. This study proposes a novel method to account for larval transport and success in stock–recruitment models: weighting the spawning stock biomass by retention rate and, in the case of multiple populations, their connectivity. Our method provides an estimate of the stock biomass contributing to recruitment and the effect of larval transport on recruitment variability. Our results indicate an effect, albeit small, in some populations at the local level. Including transport anomaly as an environmental covariate in traditional stock–recruitment models in turn captures recruitment variability at larger scales. Our study aims to quantify the role of larval transport for recruitment across spatial scales, and disentangle the roles of temperature and larval transport on effective connectivity between populations, thus informing about the potential impacts of climate change on the cod population structure in the North Sea.     

Impacts of parasites on marine survival of Atlantic salmon: a meta‐analysis

Parasites can, in theory, have large impacts on the survival of fish populations. One method to evaluate such impacts on anadromous species is to apply manipulative field experiments in which parallel groups of antiparasitically treated and non‐treated fish are simultaneously released and then subsequently recaptured as returning adults. A systematic review and meta‐analysis on all such Norwegian studies on Salmo salar provided a data set for the time period 1996 to 2011 on 118 release groups comprising 657 624 fish released and 3989 recaptured. The overall risk ratio (RR) was estimated to be 1.18 (95% CI: 1.07–1.30). The effect varied strongly between groups, (Higgins I² = 40.1%). Over 70% of this heterogeneity could be explained by the release location, time period and baseline survival. The most important predictor variable was baseline survival. In groups with low recapture in the control group (low baseline survival), the effect of treatment was high (RR = 1.7), while in groups with high recapture in the control group (high baseline survival), there was no effect of treatment (RR ~ 1.00). The most prevalent parasite in the region affected by the drugs administered was Lepeophtheirus salmonis. Hence, the meta‐analysis supports the hypothesis that L. salmonis contributes to the mortality of S. salar during outward migration. However, the effect of treatment was not consistent, but was evidently strongly modulated by other risk factors. The results suggest that the population‐level effects of parasites cannot be estimated independently of other factors affecting the marine survival of S. salar.     

Habitat Selection and Breeding Success in a Forest-nesting Alcid, the Marbled Murrelet, in Two Landscapes with Different Degrees of Forest Fragmentation

We studied habitat selection and breeding success in marked populations of a protected seabird (family Alcidae), the marbled murrelet (Brachyramphus marmoratus), in a relatively intact and a heavily logged old-growth forest landscape in south-western Canada. Murrelets used old-growth fragments either proportionately to their size frequency distribution (intact) or they tended to nest in disproportionately smaller fragments (logged). Multiple regression modelling showed that murrelet distribution could be explained by proximity of nests to landscape features producing biotic and abiotic edge effects. Streams, steeper slopes and lower elevations were selected in both landscapes, probably due to good nesting habitat conditions and easier access to nest sites. In the logged landscape, the murrelets nested closer to recent clearcuts than would be expected. Proximity to the ocean was favoured in the intact area. The models of habitat selection had satisfactory discriminatory ability in both landscapes. Breeding success (probability of nest survival to the middle of the chick rearing period), inferred from nest attendance patterns by radio-tagged parents, was modelled in the logged landscape. Survivorship was greater in areas with recent clearcuts and lower in areas with much regrowth, i.e. it was positively correlated with recent habitat fragmentation. We conclude that marbled murrelets can successfully breed in old-growth forests fragmented by logging.     

Origin of the acetylated structures present in white birch (Betula pendula Roth) milled wood lignin

The occurrence and nature of acetate groups in the milled wood lignin (MWL) isolated from birch (Betula pendula Roth) has been addressed by spectroscopic (2D-NMR) and chemical degradative (derivatization followed by reductive cleavage, DFRC) methods. Considerable amounts of acetate groups were present in the MWL preparation. However, 2D-NMR analysis indicated that the lignin polymer is not extensively acetylated and that the major part of the acetate groups is attached to the xylan moieties present in the MWL preparation. Nevertheless, evidence of the presence of minor acetylation of the γ-carbon of the lignin side chain (<3% of both syringyl and guaiacyl lignin units) was provided by DFRC analysis.     

Metabolic load in dairy cows kept in herbage‐based feeding systems and suitability of potential markers for compromised well‐being

Herbage feeding with only little input of concentrates plays an important role in milk production in grassland dominated countries like Switzerland. The objective was to investigate the effects of a solely herbage‐based diet and level of milk production on performance, and variables related to the metabolic, endocrine and inflammatory status to estimate the stress imposed on dairy cows. Twenty‐five multiparous Holstein cows were divided into a control (C+, n = 13) and a treatment group (C?, n = 12), according to their previous lactation yield (4679–10 808 kg) from week 3 ante partum until week 8 post‐partum (p.p.). While C+ received fresh herbage plus additional concentrate, no concentrate was fed to C? throughout the experiment. Within C+ and C?, the median of the preceding lactation yields (7752 kg) was used to split cows into a high (HYC+, HYC?)‐ and low‐yielding (LYC+, LYC?) groups. Throughout the study, HYC+ had a higher milk yield (35.9 kg/d) compared to the other subgroups (27.2–31.7 kg/d, p < 0.05). Plasma glucose (3.51 vs. 3.72 mmol/l) and IGF‐1 (66.0 vs. 78.9ng/mL) concentrations were lower in HYC?/LYC? compared to HYC+/LYC+ cows (p < 0.05). Plasma FFA and BHBA concentrations were dramatically elevated in HYC? (1.1 and 1.6 mmol/l) compared to all other subgroups (mean values: 0.5 and 0.6 mmol/l, p < 0.05). Saliva cortisol, plasma concentrations of serum amyloid A (SAA), haptoglobin (Hp), beta‐endorphin (BE) and activity of alkaline phosphatase (AP) were not different between C+ and C?. In conclusion, herbage‐fed high‐yielding cows without supplementary concentrate experienced a high metabolic load resulting in a reduced performance compared to cows of similar potential fed accordingly. Low‐yielding cows performed well without concentrate supplementation. Interestingly, the selected markers for inflammation and stress such as cortisol, Hp, SAA, BE and AP gave no indication for the metabolic load being translated into compromised well‐being.     

Weaning of juvenile pikeperch, Stizostedion lucioperca L., and perch, Perca fluviatilis L., to formulated feed

Weaning success of pond‐cultured pikeperch and wild‐caught perch (mean length 51 and 48 mm respectively) was evaluated using different weaning techniques and different formulated feeds. Juveniles that were fed formulated feed grew as well as or better than juveniles that were weaned successively using zooplankton or yolk. Four different formulated feeds (agglomerated marine larvae feed, marine larvae feed, trout feed and a semi‐moist feed) were evaluated regarding specific growth rate (SGR), condition factor and a subjective stomach fullness estimate. The agglomerated marine larvae feed gave significantly better weaning performance than the other feeds regarding all parameters (SGR = 7.3% day^?1 and 3.4% day^?1 for pikeperch and perch respectively).     

Electronic feed stations for feeding concentrates to pregnant ewes on commercial sheep farms

ABSTRACT

The aim of this study was to investigate the use and capacity of electronic feed stations (EFS) on commercial sheep farms. The study was conducted on four commercial farms and the numbers of pregnant ewes per EFS were 36, 70, 72 and 80, respectively. Each farm was visited once and behavioural observations were carried out. In addition the date and time for both entering and leaving the EFS and the amount of concentrates dispensed at each visit for extracted. The vast majority of the ewes used the EFS regularly. The number of rewarded visits per ewe per day varied from 3.2 to 5.9, whereas the number of unrewarded visits ranged from 6.0 to 21.5 per ewe per day. We conclude that feeding concentrates to groups of pregnant ewes in EFS function satisfactory, but the design of the entrance and exit gate still have to be improved considerably.