The Fusarium graminearum genome reveals a link between localized polymorphism and pathogen specialization

We sequenced and annotated the genome of the filamentous fungus Fusarium graminearum, a major pathogen of cultivated cereals. Very few repetitive sequences were detected, and the process of repeat-induced point mutation, in which duplicated sequences are subject to extensive mutation, may partially account for the reduced repeat content and apparent low number of paralogous (ancestrally duplicated) genes. A second strain of F. graminearum contained more than 10,000 single-nucleotide polymorphisms, which were frequently located near telomeres and within other discrete chromosomal segments. Many highly polymorphic regions contained sets of genes implicated in plant-fungus interactions and were unusually divergent, with higher rates of recombination. These regions of genome innovation may result from selection due to interactions of F. graminearum with its plant hosts.     

Impact of sustained deficit irrigation on spearmint (<Emphasis Type="Italic">Mentha spicata</Emphasis> L.) biomass production,oil yield,and oil quality

Crop response to deficit irrigation is an important consideration for establishing irrigation management strategies when water supplies are limited. This study evaluated the response of native spearmint to water deficits applied using overhead sprinklers in eastern Washington, US. Five levels of irrigation were applied ranging from full irrigation (100%) to 5% of weekly averaged full crop water needs. Soil water monitoring with soil water balance was used to estimate soil water deficits for irrigation scheduling and soil water use. Mint oil yields, oil components, dry matter production, and the water-use efficiency of the spearmint were assessed. There was significant reduction in fresh mint hay (harvested biomass) yield with increasing water deficit. However, spearmint oil yields remained generally uniform across irrigation treatments at the first cutting but decreased at the driest plots during the second harvest due to a loss of plant stand. The wet harvest index and water-use efficiency improved significantly for both harvests with increasing water deficit. Hay yield, oil yield, wet harvest index, and water-use efficiency are pooled across sides and replicate blocks to provide trends with changes in maximum evapotranspiration. The three major monoterpenes show changes suggesting less mature oil yields. The study demonstrates the feasibility of sustaining native spearmint yields under managed deficit irrigations for deficits not lower than 0.5 ETc.     

Development of a new management strategy for the control of root-knot nematodes (Meloidogyne spp) in organic vegetable production

The nematophagous fungus, Pochonia chlamydosporia (Goddard) Zare & Gams, has been investigated as a potential biological control agent for use in integrated pest management strategies for Meloidogyne incognita (Kof & White) Chitwood in vegetable crops. The release of the fungus as a biological control agent requires a diagnostic method to monitor its spread in the environment and to gain knowledge of its ecology. Only molecular methods are sufficiently discriminating to enable the detection of specific isolates of fungi in soil. A method to extract DNA from soil was developed to increase the efficacy of PCR-based diagnostic tests that use specific primers. A selected isolate of P chlamydosporia var catenulata was applied at densities similar to those that occur naturally in nematode-suppressive soils. The fungus significantly reduced nematode infestations in soil following a tomato crop, in a strategy that combined the use of the fungus with crop rotation. The survival of the fungus in soil was also examined in controlled conditions in which it remained in soil in densities significantly greater than its original application rate for at least 5 months. Hence, it seems that populations of this fungus may be built up in soil and have significant effects on the regulation of root-knot nematode populations.     

Nematophagous Verticillium spp. in soils infested with Meloidogyne spp. in Cuba: Isolation and screening

Root-knot nematodes cause substantial economic loss of yield in coffee plantations and vegetable crops in Cuba. At present, methods to control the nematodes are ineffective or inappropriate and alternatives are being sought. The nematophagous fungus Verticillium chlamydosporium (Goddard) was isolated from soils collected from coffee plantations and infected root-knot nematode eggs from roots of tomato plants grown in these soils. A total of 83 isolates were collected and identified morphologically as V. chlamydosporium var. chlamydosporium, V. chlamydosporium var. catenulatum, V. psalliotae, V. suchlasporium and an isolate of V. chlamydosporium var. chlamydosporium with unusually large dictyochlamydospores. From these, 24 that represented a range of origins were selected and screened for their ability to parasitize eggs of root-knot nematodes, colonize the rhizosphere of barley roots and produce chlamydospores. None of the isolates grew at temperatures below 15°C and V. suchlasporium grew at a faster rate at lower temperatures than the other isolates. These were also screened in the glasshouse and V. chlamydosporium var. catenulatum caused the greatest reduction in nematode populations. One isolate of each subspecies of V. chlamydosporium was tested with the standard, Rothamsted isolate 10, on a range of host plants. The greatest reduction in numbers of nematodes occurred on tomato plants (cv. Pixie). The Rothamsted isolate 10 reduced numbers of nematodes toa greater extent than the other isolates, and therefore has the greatest potential as a biological control agent of root-knot nematodes.     

Placement of jejunal feeding tubes for post-gastric feeding

In veterinary patients, postgastric feeding is indicated for uncontrollable gastric vomiting, gastroparesis, biliary tract disease, pancreatitis, and for patients at increased risk for aspirating secondary to decreased mentation, prolonged recumbency, or an unprotected airway. Postgastric feeding may be implemented via the placement of a jejunal feeding tube. These tubes can be placed surgically (jejunostomy tubes) or with fluoroscopic or endoscopic guidance. This article will focus on methods of jejunal feeding-tube placement, advantages and disadvantages of the methods described, and complications associated with jejunal feeding.     

Association of cow and quarter-level factors at drying-off with new intramammary infections during the dry period

Our objective was to describe cow and quarter-level factors associated with drying-off, and to evaluate their impacts on new intramammary infections (IMI) during the dry period. Data from 300 cows in five research herds were collected starting 2 weeks prior to scheduled drying-off. Variables of interest included daily milk production, teat-end integrity, formation of the teat-canal keratin plug, and quarter-milk bacteriological culture results. Overall, 11% of quarters developed new IMI in the dry period; this varied by herd, parity and time of the study. Most new IMI were caused by environmental streptococci and coliform organisms (34 and 30%, respectively). Quarters that had a cracked teat-end had higher odds of developing new infections than those without cracks (15 and 10%, respectively). Quarters that formed a keratin plug early in the dry period had a lower odds than those that did not close (10 and 14%, respectively). After 6 dry weeks, 23% of quarters were still open. The hazard of quarters closing if milk production on the day prior to drying-off was >21 kg 1.8-times less.     

The prevalence of milk and serum antibodies to Mycobacterium avium subspecies paratuberculosis in dairy herds in Ontario

This study randomly surveyed 50 dairy herds in Ontario; 18% and 30% of herds had 2 or more milk or serum enzyme-linked immunosorbent assay (ELISA)-positive cows, respectively. The apparent cow level prevalence was 1.7% and 2.6% on the milk and serum ELISA, respectively. The serum and milk assays agreed moderately.     

Prevalence of and risk factors for paratuberculosis in purebred beef cattle

OBJECTIVE: To estimate the prevalence of paratuberculosis in purebred beef cattle in Texas and identify risk factors for seropositivity. DESIGN: Epidemiologic survey. ANIMALS: 4,579 purebred cattle from 115 beef ranches in Texas. PROCEDURE: Blood was collected, and serum was analyzed for antibodies with a commercial ELISA. Fecal samples were collected and frozen at -80 degrees C until results of the ELISA were obtained, and feces from seropositive cattle were submitted for mycobacterial culture. Herd owners completed a survey form on management factors. RESULTS: Results of the ELISA were positive for 137 of the 4,579 (3.0%) cattle, and 50 of the 115 (43.8%) herds had at least 1 seropositive animal. Results of mycobacterial culture were positive for 10 of the 137 (7.3%) seropositive cattle, and 9 of the 50 (18%) seropositive herds had at least 1 animal for which results of mycobacterial culture were positive. Risk factors for seropositivity included water source, use of dairy-type nurse cows, previous clinical signs of paratuberculosis, species of cattle (Bos taurus vs Bos indicus), and location. CONCLUSIONS AND CLINICAL RELEVANCE: Results suggested that seroprevalence of paratuberculosis among purebred beef cattle in Texas may be greater than seroprevalence among beef cattle in the United States as a whole; however, this difference could be attributable to breed or regional differences in infection rates or interference by cross-reacting organisms. Veterinarians should be aware of risk factors for paratuberculosis as well as the possibility that unexpected serologic results may be found in some herds.     

Surgical management of cicatricial ectropion following scarring dermatopathies in two dogs

Two dogs were presented with severe dermatopathies leading to cicatricial ectropion and severe surface ocular pathology. In one case, idiopathic sterile pyogranuloma was diagnosed on histopathology and managed with systemic immunosuppressive therapy. In the second case, demodicosis was diagnosed on skin scrapings and successfully treated with acaricidal medication. Following control of the underlying dermatopathies, both cases developed cicatricial ectropion as a result of scarring and contracture of eyelid tissue. Wharton-Jones (V-Y) blepharoplasties were performed on the affected eyelids and resulted in improved eyelid function and reduced corneal exposure in both cases.