Identification and functional analysis of alleles for productivity in two sets of chromosome segment substitution lines of rice

Using two sets of chromosome segment substitution lines (CSSLs) of crosses between cvs. ‘Koshihikari’ and ‘Kasalath’ (Ko/Ka) and between ‘Koshihikari’ and ‘Nona Bokra’ (Ko/NB), respectively, we have identified alleles for ten traits related to productivity (e.g., harvest index and biomass) in rice (Oryza sativa L.). A total of 43 chromosome regions affecting traits (CRATs) in Ko/Ka CSSLs and 40 in Ko/NB CSSLs were detected. Among them, ten and 18 CRATs in Ko/Ka and Ko/NB CSSLs, respectively, had positive effects. A CRAT for harvest index (HI) with a positive allele from ‘Kasalath’ on chromosome 6 (tentatively named HI6) increased the HI by 25 % relative to ‘Koshihikari’, raising it to the theoretical upper limit in rice (0.6). Functional analysis using CSSLs with HI6 indicated that HI6 reduced the size of the lower parts of the plant, which is not important for production, while maintaining the size of the other organs related to production (e.g., flag leaf and panicle), resulting in improved nitrogen (N) use efficiency. These results suggest an ‘ideal plant type’ with improved N use efficiency that can sustain higher yields. A CRAT for the SPAD (soil plant analysis development) value, which is a chlorophyll meter value commonly used as an indicator of leaf N content and strongly associated with the source ability of a leaf, with a ‘Nona Bokra’ allele on chromosome 4 increased the value by 13 % relative to ‘Koshihikari’ with no loss of leaf area. These CRATs can be used for the improvement of rice productivity.     

Variation in cooking and eating quality traits in Japanese rice germplasm accessions

The eating quality of cooked rice is important and determines its market price and consumer acceptance. To comprehensively describe the variation of eating quality in 183 rice germplasm accessions, we evaluated 33 eating-quality traits including amylose and protein contents, pasting properties of rice flour, and texture of cooked rice grains. All eating-quality traits varied widely in the germplasm accessions. Principal-components analysis (PCA) revealed that allelic differences in the Wx gene explained the largest proportion of phenotypic variation of the eating-quality traits. In 146 accessions of non-glutinous temperate japonica rice, PCA revealed that protein content and surface texture of the cooked rice grains significantly explained phenotypic variations of the eating-quality traits. An allelic difference based on simple sequence repeats, which was located near a quantitative trait locus (QTL) on the short arm of chromosome 3, was associated with differences in the eating quality of non-glutinous temperate japonica rice. These results suggest that eating quality is controlled by genetic factors, including the Wx gene and the QTL on chromosome 3, in Japanese rice accessions. These genetic factors have been consciously selected for eating quality during rice breeding programs in Japan.     

亚硒酸钠浸种对春小麦种子萌发特性的研究

为研究硒浸种对春小麦种子活力和幼苗生长特性的影响,分别设置0,0.5,1.0,2.5,3.5,5.0,10.0,50.0 mg/L共8个亚硒酸钠溶液浓度,通过发芽试验,比较研究了不同浓度的亚硒酸钠浸种对春小麦种子萌发和幼苗生长的影响.结果表明:随着亚硒酸钠溶液浓度升高,春小麦种子的发芽率、发芽势、发芽指数、活力指数、幼苗和根长以及干鲜重等指标均呈先升高后下降的趋势;1.0 mg/L的亚硒酸钠溶液对小麦种子萌发和幼苗生长有促进作用;随着亚硒酸钠浓度的升高(≥2.5 mg/L),其各项指标显著下降,并对根和苗的生长表现出抑制作用;因此在实际生产中,掌握合适的硒浸种浓度非常关键.     

Home garden system dynamics in Southern Ethiopia

Home gardens in southern Ethiopia are regarded as efficient farming systems, allowing interactions and synergies between crop, tree and livestock components. However, these age-old traditional home gardens are evolving rapidly in response to changes in both the socio-economic and biophysical environment. Altered cropping patterns, farm size and component interactions may affect the systems’ sustainability. Home gardens exhibit a huge diversity in farms and farming systems, which needs to be understood in order to design interventions for improvement. Dynamics of home gardens were studied over two-decades (1991–2013) based on a survey of 240 farm households and focus group discussions. Farms were grouped into five types: Khat-based, Enset-cereal-vegetable, Enset-based, Enset-coffee and Enset-livestock. Farm trajectories revealed a shift from food-oriented Enset-based and Enset-livestock systems to (1) cash crop oriented khat-based systems, and (2) combined food and cash crop oriented Enset-cereal-vegetable systems. In densely populated, market proximate areas a major trend was expansion of khat, from 6 to 35% of the area share per farm, while the combined area share of enset and coffee decreased from 45 to 25%. Concurrently, the cattle herd size fell from 5.8 TLU to 3.9 TLU per household. In medium populated, less accessible areas the trend was consolidation of combined production of food and cash crops. Enset and coffee together maintained a share of over 45%. Easy transport and marketing of the perishable cash-generating khat compared with traditional crops favoured its cultivation among smallholders located close to markets. The insights in home garden change in response to increasing population pressure, decreasing farm size and market development may help to design interventions to increase system sustainability.     

Fourteen years of applying zero and conventional tillage,crop rotation and residue management systems and its effect on physical and chemical soil quality

Soil management systems may negatively affect the quality of the soil. Policymakers and farmers need scientific information to make appropriate land management decisions. Conventional (CT) and zero tillage (ZT) are two common soil management systems. Comparative field studies under controlled conditions are required to determine the impact of these systems on soil quality and yields. The research presented studied plant and soil physical and chemical characteristics as affected by different agricultural management practices, i.e. ZT and CT, cropped with continuous wheat or maize in monoculture (M) or in a yearly rotation (R) of these two crops, either with residue retention (+r) or without residues retention (?r), in an experimental field in the Transvolcanic Belt of Mexico after 14 years. The dominant factors defining soil quality were organic C, total N, moisture, aggregate stability, mechanical resistance, pH and EC. The principal component combining the variables organic C, total N, aggregate stability and moisture content showed the highest correlations with final yield (R = 0.85 for wheat and 0.87 for maize).After 14 years of continuous practice, ZTM + r and ZTR + r had the best soil quality and produced the highest wheat and maize yields of average 2001–2004 (6683 and 7672 kg ha^?1 and 5085 and 5667 kg ha^?1, respectively). Removing the residues, i.e. treatments ZTM ? r with maize (average 2001–2004: 1388 kg ha^?1) and ZTR ? r and CTR ? r with wheat (average 2001–2004: 3949 and 5121 kg ha^?1), gave the lowest yields and less favourable soil physical and chemical characteristics compared to the other practices. It was found that zero tillage with residue retention is a feasible management technology for farmers producing maize and wheat in the agro-ecological zone studied, resulting in a better soil quality and higher yields than with the conventional farmer practice (maize monoculture, conventional tillage and residue removal).     

Genetic factors determining varietal differences in characters affecting yield between two rice (Oryza sativa L.) varieties,Koshihikari and IR64

The yield of Koshihikari, a Japanese premium rice variety, is relatively lower than that of modern high yielding varieties. IR64 carries several well-known genes such as GS3, an important gene for grain size, sd-1, a semi-dwarf gene, and NARROW LEAF1 (NAL1), a gene for small, narrow flag leaves. In this study, we used two sets of chromosome segment substitution lines (CSSLs), from Koshihikari and IR64, and attempted to evaluate the genetic factors that cause differences between parents by analyzing the function of chromosome regions affecting a trait (CRATs). For 28 traits, we identified 312 CRATs in the Koshihikari background and 275 in the IR64 background. In these, donor alleles had positive effects in 84 and 103 CRATs, respectively. Among these, the CRAT related to GS3 and those for grain number expanded the potential sink size in Koshihikari, although this did not affect final yield. The combination of CRATs that enhances source ability may increase grain yield. Although the sd-1 gene might improve resistance to lodging, the yield of CSSLs with sd-1 decreased by 28.7 %. These results suggest that the smaller biomass conferred by sd-1 might reduce canopy photosynthesis. In the Koshihikari background, the CRAT related to NAL1 and those located on chr. 6 increased SPAD value but had the opposite effect on leaf size. Two CRATs that were detected on chr. 6 and 7 increased leaf area without any effect on the SPAD value. The combination of these CRATs for area and SPAD value might improve source ability.     

Screening wild plants of Capsicum annuum for resistance to pepper huasteco virus (PHV): Presence of viral DNA and differentiation among populations

Plants collected in thirteen wild populations of Capsicum annuum from Northwest Mexico were tested for resistance to the pepper huasteco begomovirus (formerly subgroup III) (PHV) that is transmitted by the white fly Bemisia tabaci Genadius. Plants were inoculated using both grafting and biolistic methods. Presence of viral DNA was detected by dot blot hybridization and densitometry. Populations varied in their resistance to PHV. Plants of only two of the populations either did not develop disease symptoms or showed very light symptoms after inoculation. In some cases, symptoms appeared several days after inoculation. In plants of these populations viral DNA was detected by dot-blot hybridization assays but they appear to be a good source of resistance (symptomless) for use in breeding programmes. This revised version was published online in August 2006 with corrections to the Cover Date.     

Genetic and functional leaf traits variability of Quercus laurina along an oak diversity gradient in Mexico

The ecological literature has documented the effects of plant hybridization on phenotypic variation, and dominant, intermediate, or novel morphological, chemical and physiological traits in hybrids. It is important to understand the ecological consequences of hybridization by evaluating their impact on phenotypic expression of functional traits. We evaluated the relationship between genetic diversity of Quercus laurina and functional foliar traits along an oak diversity gradient. We selected five study sites that represent an oak diversity gradient where Q. laurina is present. Using chloroplast and nuclear microsatellites, we evaluated genetic diversity, measured functional foliar traits of Q. laurina in each site and assessed the effects of local climate variables on the oak community and functional traits. We found a greater abundance of Q. laurina in all study sites. We did not find a relationship between the number of accompanying red oak species and the population genetic diversity in Q. laurina, but higher genetic diversity was found in all study sites in comparison with European oak species. Sites with more oak species had more variation of foliar functional traits. Our results do not support the hypothesis that predicts higher levels of genetic diversity of Q. laurina in communities with greater oak diversity from the same section, but we demonstrated an increase in the foliar functional traits of Q. laurina associated with oak richness and climate variables. We highlight the need to consider environmental and ecological variables linkages as regulatory mechanisms of the phenotypic plasticity expressed in changes of some functional attributes of oaks.

     

Influences of anthropogenic disturbances on the dynamics of white birch (Betula platyphylla) forests at the southern boundary of the Mongolian forest-steppe

We investigated the effects of disturbances on the dynamics of white birch-dominated forests at the southern boundary of the Mongolian forest-steppe. Dendroecological techniques were used to assess regeneration patterns and recent mortality trends in three stands with no evidence of recent anthropogenic disturbance (undisturbed) and four stands with evidence of cutting or fire (disturbed). In the undisturbed stands, only one distinct stem establishment was observed in the period between 1910 and 1950, and no establishment has been observed since then. In the disturbed stands, however, high establishment mainly by sprouting was observed in the period between 1960 and 1980. Percentages of standing dead stems were higher in the undisturbed stands than in the disturbed stands. Mean ages at death in the undisturbed stands were ≥70 years old. The high mortality was likely induced by the death of smaller stems due to light competition, whereas the mortality of larger stems was likely the result of tree senescence. In summary, the undisturbed stands seem to be in danger of decline due to a lack of regeneration during the last half of the previous century and recent high mortality rates of older stems, while the disturbed stands may be maintained for the next several decades by the younger cohort established between 1960 and 1980. White birch-dominated forests at the southern boundary of Mongolian forest-steppe have probably relied on relatively short disturbance intervals in the past because of the disturbance-dependent regeneration trait and relatively short longevity of Betula species.