Mapping rice-planted areas using time-series synthetic aperture radar data for the Asia-RiCE activity

In Asia, rice is a staple cereal crop and the continent accounts for about 90 % of the global rice production and consumption. Statistics on the areas planted with rice or production of paddy rice are fundamental to agriculture-related decisions or policy-making. Asia-Rice Crop Estimation & Monitoring (Asia-RiCE) aims to develop rice-related information, such as paddy field maps, rice growing conditions, yield, and production, using remote sensing tools and disseminate the same at the local and global scales. In this paper, we propose a methodology for the identification of rice-planted areas by using multi-temporal SAR images; a software named INternational Asian Harvest mOnitoring system for Rice (INAHOR) was developed to manipulate the proposed algorithm. The INAHOR uses the imagery observed both at the time of planting of rice and grown-up stages. In this study, two thresholds needed for the INAHOR were optimized based on the detailed land cover data collected through a field survey. Rice-planted areas across the study area in Japan were identified by the INAHOR using the RADARSAT-2 Wide Fine beam mode data. The classification results of RADARSAT-2 VV and VH polarizations were compared. The data with VH polarization showed a higher total accuracy of 83 % with ?20.5 dB and 3.0 dB for the minimum and range thresholds, respectively. The INAHOR is currently being used with the RADARSAT-2, ALOS, and ALOS-2 SAR data in the Southeast Asian countries to assess the robustness of the thresholds and classification accuracies under the framework of Asia-RiCE.     

Effects of patch cutting on leaf nitrogen nutrition in hinoki cypress (Chamaecyparis obtusa Endlicher) at different elevations along a slope in Japan

Leaf nitrogen nutrition of hinoki cypress (Chamaecyparis obtusa Endlicher) was investigated at three positions along a slope over a period of 3 years. At each slope position, nitrogen properties were compared in patch-cut plots (0.06–0.09 ha) and uncut control plots (0.04 ha). Nitrogen cycling at the lower slope was characterized by a higher rate of soil nitrogen mineralization, and higher nitrogen concentration in fresh leaves and leaf-litter. The soil nitrogen mineralization rate and fresh-leaf nitrogen concentration in the patch-cut plots were higher than those in the control plots. However, leaf-litter nitrogen concentration did not differ between the patch-cut and control plots. The results suggest that slope position strongly affects leaf nitrogen nutrition of hinoki cypress and soil nitrogen availability. By contrast, patch cutting does not affect leaf-litter nitrogen concentration. These findings indicated that hinoki cypress would not enhance forest nitrogen cycling through changes in leaf-litter nitrogen concentration after patch cutting.     

Distinguishing local growth from immigration-based size shifts for juvenile chum salmon communities in coastal Hokkaido, northern Japan

The body size of juvenile fish is often used as an index of growth rate, which in turn is influenced by local habitat conditions. We evaluated the size and origin of juvenile Chum salmon Oncorhynchus keta in the coastal areas of three regions (Atsuta, Shari, and Konbumori) of Hokkaido, northern Japan. The origin of the individuals in these communities differed between Konbumori and the other two regions. The former contained juveniles that originated from both the nearest stocked river and other rivers that were outside the area of interest. Conversely, the communities in Atsuta and Shari consisted exclusively of fish from the nearest stocked river. Moreover, the juveniles in Konbumori were larger than those in Atsuta and Shari. The results of our otolith analysis suggest that the larger size of the fish in Konbumori was due to the immigration of large individuals from natal rivers at distant locations. Thus, immigrants were likely to enlarge their body size composition in the area of interest. In summary, if the distance from a natal river is adjusted and daily growth is taken into account, body size can be used as an indicator of growth performance in coastal juvenile chum salmon.     

Characterization of the cathelicidin cluster in the Japanese quail (Coturnix japonica)

The Japanese quail has several advantages as a low‐fat meat bird with high immunity against diseases. Cathelicidins (CATHs) are antimicrobial peptides that play an important role in innate immunity. The aim of this study was to characterize the CATH cluster in the Japanese quail (Coturnix japonica). The Japanese quail CATH (CjCATH) cluster, contains four CATH genes, as in the chicken. The coding sequences of CjCATHs exhibited >85.3% identity to chicken CATHs. The predicted amino acid sequences of the four CjCATH genes contained the cathelin‐like domain characteristic of CATH proteins. Polymorphisms were detected in the open reading frames (ORFs) of all CjCATH sequences. Two amino acid substitutions were observed in the antimicrobial region of the mature peptide of CjCATH2, and predicted to influence peptide function. CjCATH1 is expressed in lung, heart, bone marrow and bursa of Fabricius (BF). CjCATH2 is expressed in bone marrow. CjCATH3 is expressed in lung, heart, bone marrow, BF, tongue and duodenum. CjCATHB1 is expressed in bone marrow and BF. This study is the first to characterize CATH genes in the Japanese quail, and identifies novel antimicrobial peptide sequences belonging to the cathelicidin family, which may play a role in immunity in this species.     

Modeling of Salt Sorption in Volcanic Ash Soil

Groundwater pollution by nitrate from agricultural fields is a worldwide problem. To improve the understanding of nitrate transport processes through volcanic ash soils overlying groundwater aquifers, salt sorption experiments were performed. Salt sorption is the process that involves the simultaneous use of cation and anion adsorption mechanisms without changing the pH. Prepared six different concentrations of potassium chloride (KCl) solutions were mixed with soil samples. Anion and cation contents of the liquid and solid phases were determined. Experiments were performed in triplicate of six kinds of KCl solutions for three types of soils. Thus, total 54 of samples were analyzed. Relationships between ionic strength and sorption capacity increments of cations and anions were determined. The results show that if ionic strength of the infiltrating solution to the volcanic ash soil is known, the ECEC (effective cation exchange capacity) and EAEC (effective anion exchange capacity) can be reliably estimated. The resulting prediction equations can be included to improve reactive transport simulation models. Consequently, it will be possible to better understand solute transport with changing sorption capacity for the solid soil phase.     

Evaluation of drag coefficients of poplar-tree crowns by a field test method

To estimate the wind force that causes windthrow damage to a tree, the drag coefficients of actual-sized trees were evaluated by a field test method. In this method, wind velocity and stem deflection were monitored simultaneously. The wind force acting on a tree crown was calculated from stem deflection; stem stiffness was evaluated by conducting tree-bending tests. The results of tests conducted on three poplar trees showed that drag coefficient decreased with an increase in wind velocity. Although the variation in the drag coefficient was large at low wind velocity because of the vibrating behavior of the stem subjected to variable wind force, the variation at wind velocities above 10 m/s was small. The average drag coefficient at a wind velocity of 30 m/s was estimated by the curve-fitting of a power function to the wind velocity-drag coefficient relationship to be 0.102, which was smaller than that of actual-sized conifers studied in previous wind tunnel experiments. The drag coefficients of these crown areas in the defoliation season were smaller than those measured in the leafy season.     

The structure of iron in Earth's inner core

Earth's solid inner core is mainly composed of iron (Fe). Because the relevant ultrahigh pressure and temperature conditions are difficult to produce experimentally, the preferred crystal structure of Fe at the inner core remains uncertain. Static compression experiments showed that the hexagonal close-packed (hcp) structure of Fe is stable up to 377 gigapascals and 5700 kelvin, corresponding to inner core conditions. The observed weak temperature dependence of the c/a axial ratio suggests that hcp Fe is elastically anisotropic at core temperatures. Preferred orientation of the hcp phase may explain previously observed inner core seismic anisotropy.     

Influences of Northern Leaf Blight on corn silage fermentation quality,nutritive value and feed intake by sheep

This study examined the differences between non‐inoculated (control) corn and Northern Leaf Blight (NLB)‐damaged corn (inoculated corn); dry matter (DM) yield, silage fermentation quality, nutritive value and feed intake by sheep were compared. Leaf, stem and grain dry weights and gross yield of inoculated corn were significantly (P < 0.05) decreased compared with control corn. The contents of water‐soluble carbohydrate and nitrogen‐free extract (NFE) were decreased in inoculated corn compared with control corn. Silage made from both inoculated and control corn showed good fermentation quality. The digestibility of DM, organic matter, ether extract, NFE, and energy of silage made from inoculated corn were significantly (P < 0.05) lower, and contents of total digestible nutrients (TDN) and digestible energy (DE) were also significantly (P < 0.05) lower compared with silage made from the control corn. DM intake showed no significant discrepancy between the two types of silage. TDN and DE intakes from inoculated silage were significantly (P < 0.05) lower compared with control silage. From the above results it was shown that NLB caused a decrease in DM yield and NFE content in corn and a decrease in the nutritive value and feed intake of silage.