The British pig health schemes: integrated systems for large-scale pig abattoir lesion monitoring

Pig health schemes based on abattoir inspections provide an integrated system to optimise the postmortem detection and the reporting of pathological lesions. In Great Britain, two initiatives have been implemented by the pig industry: Wholesome Pigs Scotland (WPS) and the BPEX Pig Health Scheme (BPHS). These schemes record the presence of a range of pathological lesions detected by means of detailed inspection of the pluck and the skin of the slaughtered pigs. The lesions are those associated with a reduction in performance traits or are indicators of animal welfare problems. This paper aims to provide an overview of the objectives behind the BPHS and their activities, outlining similarities and differences between WPS and BPHS on five main operational topics: the lesions monitored, the administration of the schemes, flow of the information, inspection strategies and the major idiosyncratic characteristics of the schemes. These initiatives inform individual producers and their veterinarians of the occurrence of pathological conditions affecting their pig herds. Additionally, they offer the added value of providing nationwide disease monitoring information and have the potential to be a useful surveillance tool for emerging and enzootic conditions.     

Epidemiology and impact of Neospora caninum infection in three Queensland tropical dairy herds

This study investigated the epidemiology of Neospora caninum in three tropical dairy herds in North Queensland, Australia. All animals in the herds were bled, and the sera were tested by ELISA for N. caninum antibodies. Herd records were examined, and the number of calves carried to term and the number of abortions which occurred over the lifetime of each animal were recorded to determine the abortion rate for each animal. Pedigrees were constructed for two of the herds to investigate whether vertical transmission was occurring. The seroprevalence of N. caninum ranged from 23% to 34%. The abortion rate in seropositive animals was significantly (p < 0.001) higher than in seronegative animals in all three herds (12-20.1% cf. 3.6-7%). Overall, the probability of a calf being seropositive was 3.5 times higher when the dam was also seropositive than when the dam was seronegative. Subsequent selective breeding employed by one herd reduced the N. caninum seroprevalence from 23% to 5% over a 9-year period. This study shows that N. caninum infection is prevalent in North Queensland dairy cattle, and both post-natal infection and vertical transmission are common.     

Risk factors for hide contamination of Scottish cattle at slaughter with Escherichia coli O157

In the slaughter processing of cattle, contaminated hides have been identified as one of the major sources of Escherichia coli O157 carcase contamination. Logistic regression analysis was applied to data collected in a large scale study in Scotland involving 222 cattle forming 34 groups sent for slaughter from 30 farms to 10 slaughterhouses. Aspects of individual animal characteristics, farm management practices and slaughterhouse features were examined to identify potential risk factors for hide contamination at harvest. Two models were developed, the first in which slaughterhouse was modelled as a fixed effect, and a second model where slaughterhouse and farm groups were modelled as random effects. In the first model, there was a significantly increased risk of a carcase testing positive for E. coli O157 on the hide if either the hide of the carcase immediately before or after it on the line was contaminated (OR 3.6; 95% CI: 1.4–9.9). If both adjacent carcases had contaminated hides, the odds ratio for the study carcase having a contaminated hide rose to 11.5 (95% CI: 4.4–32.5). If animals were held in lairage, receiving hay as feed appeared to have a protective effect on hide contamination. Transportation to the slaughterhouse by haulier, as opposed to transport by the farmer, was associated with a 5.4 increase in the odds of E. coli O157 contamination. The use of a crush in the lairage, often employed when reading ear tags, was also found to significantly increase the odds of hide contamination with E. coli O157. In the second model, the inclusion of slaughterhouse and farm group as random effects resulted in two of the previously identified factors being associated with hide contamination. If at least one of the adjacent carcases on the line had a contaminated hide, the associated odds ratio was 6.6 (95% CI: 2.8–15.9), which rose to 22.7 (95% CI: 9.3–55.5) if both adjacent hides were contaminated. Receiving hay in lairage was found to be important to the model, although not significant in itself (OR 0.005; 95% CI: 1.2e⁻⁶–20.7). These results suggest that modifiable risk factors for hide contamination exist. However, in order best to reduce the prevalence of hide contamination at slaughter, individual slaughterhouse risk assessment and intervention strategies are appropriate.     

A phylogenetic analysis of Bovine Viral Diarrhoea Virus (BVDV) isolates from six different regions of the UK and links to animal movement data

Bovine Viral Diarrhoea Virus (BVDV) is a pestivirus which infects cattle populations worldwide and is recognised as a significant source of economic loss through its impact on health and productivity. Studies investigating the molecular epidemiology of BVDV can give invaluable information about the diversity of viral strains present in a population and this, in turn, can inform control programs, drive vaccine development and determine likely infection sources. The current study investigated 104 viral isolates from forty farms across the UK. Through phylogenetic and nucleotide sequence analysis of the 5′UTR and N^pro regions of the isolates investigated, it was determined that BVDV 1a was the predominant sub-genotype. However, BVDV 1b, 1e and 1i were also identified and, for the first time in the UK, BVDV 1d. Through analysis of animal movement data alongside the phylogenetic analysis of these BVD isolates, it was possible to link animal movements to the viral isolates present on several premises and, for the first time, begin to elucidate the routes of viral transmission. With further work, this type of analysis would enable accurate determination and quantification of the true biosecurity risk factors associated with BVDV transmission.     

Using seasonal-trend decomposition based on loess (STL) to explore temporal patterns of pneumonic lesions in finishing pigs slaughtered in England, 2005-2011

Enzootic pneumonia (EP) is responsible for considerable economic losses in pig production. This study analyses temporal variations of pneumonic lesions present in slaughtered finishing pigs utilising a novel analytical tool - STL decomposition. Using data collected over a 6-year period starting in July 2005, time-series analyses were conducted to identify trend and the presence of seasonal variations to support industry led measures to monitor and control this important respiratory disease. In England, the BPEX Pig Health Scheme monitors the occurrence of EP in slaughtered finished pigs by identifying its gross pathology, enzootic pneumonia-like (EP-like) lesions. For visual analytics, the monthly prevalence for EP-like lesions was modelled using STL, a seasonal-trend decomposition method based on locally-weighted regression. A binomial generalised linear mixed-effects model (GLMM), accounting for clustering at batch level, was used to test the significance of the trend and seasonality. A mean of 12,370 pigs was assessed per month across 12 pig abattoirs over the study period. A trend toward reduction in prevalence of EP-like lesions during the first 3 years of BPHS, followed by an increasing trend, was identified with STL. This feature was consistent with the presence of a statistically significant positive quadratic term ("U" shape) as identified using the GLMM inference model. November and December appeared in the STL explorations as higher seasonal peaks of the occurrence of EP-like lesions. These 2 months had a significantly higher risk of this disease (OR=1.38, 95% CI: 1.24-1.54 and OR=1.4, 95% CI: 1.25-1.58, respectively, with July taken as baseline). The results were reported back to the pig industry as part of the national monitoring investigations.