Staphylococcus aureus seroproteomes discriminate ruminant isolates causing mild or severe mastitis

ABSTRACT: Staphylococcus aureus is a major cause of mastitis in ruminants. In ewe mastitis, symptoms range from subclinical to gangrenous mastitis. S. aureus factors or host-factors contributing to the different outcomes are not completely elucidated. In this study, experimental mastitis was induced on primiparous ewes using two S. aureus strains, isolated from gangrenous (strain O11) or subclinical (strain O46) mastitis. Strains induced drastically distinct clinical symptoms when tested in ewe and mice experimental mastitis. Notably, they reproduced mild (O46) or severe (O11) mastitis in ewes. Ewe sera were used to identify staphylococcal immunoreactive proteins commonly or differentially produced during infections of variable severity and to define core and accessory seroproteomes. Such SERological Proteome Analysis (SERPA) allowed the identification of 89 immunoreactive proteins, of which only 52 (58.4%) were previously identified as immunogenic proteins in other staphylococcal infections. Among the 89 proteins identified, 74 appear to constitute the core seroproteome. Among the 15 remaining proteins defining the accessory seroproteome, 12 were specific for strain O11, 3 were specific for O46. Distribution of one protein specific for each mastitis severity was investigated in ten other strains isolated from subclinical or clinical mastitis. We report here for the first time the identification of staphylococcal immunogenic proteins common or specific to S. aureus strains responsible for mild or severe mastitis. These findings open avenues in S. aureus mastitis studies as some of these proteins, expressed in vivo, are likely to account for the success of S. aureus as a pathogen of the ruminant mammary gland.     

Pedotransfer functions for isoproturon sorption on soils and vadose zone materials

BACKGROUND: Sorption coefficients (the linear K_D or the non‐linear K_F and N_F) are critical parameters in models of pesticide transport to groundwater or surface water. In this work, a dataset of isoproturon sorption coefficients and corresponding soil properties (264 K_D and 55 K_F) was compiled, and pedotransfer functions were built for predicting isoproturon sorption in soils and vadose zone materials. These were benchmarked against various other prediction methods. RESULTS: The results show that the organic carbon content (OC) and pH are the two main soil properties influencing isoproturon K_D. The pedotransfer function is K_D = 1.7822 + 0.0162 OC^1.5 ? 0.1958 pH (K_D in L kg^?1 and OC in g kg^?1). For low‐OC soils (OC < 6.15 g kg^?1), clay and pH are most influential. The pedotransfer function is then K_D = 0.9980 + 0.0002 clay ? 0.0990 pH (clay in g kg^?1). Benchmarking K_D estimations showed that functions calibrated on more specific subsets of the data perform better on these subsets than functions calibrated on larger subsets. CONCLUSION: Predicting isoproturon sorption in soils in unsampled locations should rely, whenever possible, and by order of preference, on (a) site‐ or soil‐specific pedotransfer functions, (b) pedotransfer functions calibrated on a large dataset, (c) K_OC values calculated on a large dataset or (d) K_OC values taken from existing pesticide properties databases. Copyright © 2011 Society of Chemical Industry     

Genome-Wide Association Study of Nitrogen Use Efficiency and Agronomic Traits in Upland Rice

Genome-wide association study (GWAS) was performed for 16 agronomic traits including nitrogen use efficiency (NUE) and yield-related components using a panel of 190 mainly japonica rice varieties and a set of 38 390 single nucleotide polymorphism (SNP) markers. This panel was evaluated under rainfed upland conditions in Madagascar in two consecutive cropping seasons with two contrasted nitrogen input levels. Using another set of five grain traits, we identified previously known genes (GW5, GS3, Awn1 and Glabrous1), thus validating the pertinence and accuracy of our datasets for GWAS. A total of 369 significant associations were detected between SNPs and agronomic traits, gathered into 46 distinct haplotype groups and 28 isolated markers. Few association signals were identified for the complex quantitative trait NUE, however, larger number of quantitative trait loci (QTLs) were detected for its component traits, with 10 and 2 association signals for nitrogen utilization efficiency and nitrogen uptake efficiency, respectively. Several detected association signals co-localized with genes involved in nitrogen transport or nitrogen remobilization within 100 kb. The present study thus confirmed the potential of GWAS to identify candidate genes and new loci associated with agronomic traits. However, because of the quantitative and complex nature of NUE-related traits, GWAS might have not captured a large number of QTLs with limited effects.     

Quantifying suspended sediment sources during runoff events in headwater catchments using spectrocolorimetry

Purpose

Understanding hydro-sedimentary dynamics at the catchment scale requires high temporal resolution data on suspended sediments such as their origin, in addition to the common measurements of sediment concentrations and discharges. Some rapid and low-cost fingerprinting methods based on spectroscopy have recently been developed. We investigated how visible spectra could be used to predict the proportion of various source materials in suspended sediment samples, paying particular attention to the potential alteration of spectrocolorimetric signatures between soils and suspended sediments during transport.

Materials and methods

The 22-km² Galabre catchment, France, is composed of black marls, limestones, molasses, undifferentiated deposits and gypsum. Forty-eight source materials were sampled and 328 suspended sediment samples were collected at the outlet during 23 runoff events. Measurements were taken with a diffuse reflectance spectrophotometer on dried samples. As the erosion processes are particle size selective, five particle size fractions of source material were measured in order to assess the potential alteration of the fingerprint signatures. As the biogeochemical processes occurring in the river could also affect the signatures, source materials were immersed in the river for durations ranging from 1 to 63 days and subsequently measured. Finally, partial least-squares regression models were constructed on 81 artificial laboratory mixtures to predict the proportions of source materials.

Results and discussion

The spectrocolorimetric measurements discriminated the primary source materials but not the Quaternary deposits. As the gypsum was not conservative, only the black marls, molasses and limestones were used in the fingerprinting procedure. The construction of the partial least-squares regression models led to a median absolute error of 1.1%. This error increased to 3.9% when the models were applied to source samples with: (1) different particle sizes; (2) different durations spent in the river; or (3) different origins than those used for their construction. The effect of particle size on the fingerprinting procedure was larger than the effect of biogeochemical reactions or the spatial variability of the spectrocolorimetric signatures. Half of the 23 runoff events analysed exhibited huge variations in the source proportions from one sediment sample to another.

Conclusions

The spectrocolorimetric fingerprinting approach was able to quantify routinely the proportion of primary source materials in all suspended sediment samples collected during runoff events. The high temporal resolution of the predicted proportions revealed that only analysing three or four suspended sediment samples during a runoff event could lead to a misunderstanding of the hydro-sedimentary processes for more than half of the investigated runoff events.     

Resistance Evaluation of Some Chinese Leading Rice Maintainer, Restorer lines and Their Hybrids to Magnaporthe grisea

Six isolates of Magnaporthe grisea were selected to inoculate on 10 Chinese leading maintainer lines (B-lines), 14 restorer lines (R-lines) and their F1 hybrid plants. In the tested rice materials, R-lines were proved to be more resistant to blast than B-lines.The resistance frequency of about 25% F1 hybrid plants was less than their parents. In addition, 26 isolates of M. grisea collected from different rice growing areas of China were inoculated on 13 new improved hybrid rice combinations. The resistance frequencies of 5 improved hybrids were better than those of the controls and leading varieties in rice production of China.     

Alternate crop and weed host plant oviposition preferences by the Mexican rice borer (Lepidoptera: Crambidae)

The Mexican rice borer, Eoreuma loftini (Dyar), is the key pest of sugarcane, Saccharum hybrids, in south Texas, having largely displaced the sugarcane borer, Diatraea saccharalis (F.), and it is moving into rice- and sugarcane-growing areas of east Texas and Louisiana. While a number of alternative weed and crop hosts have been reported, the extent to which they might support Mexican rice borer populations is unknown. This study involved choice assays that compared oviposition preference for and larval infestations of five mature graminaceous weed species. Levels of infestation between sugarcane and corn, Zea mays L., crop hosts and between corn and sorghum, Sorghum bicolor (L.) Moench, were also assessed. We determined that the average number of larval entry holes in sudangrass stems was ≥2.5-fold more than for any of the other four weed host plants, that corn had ≥5.9-fold more larval entry holes than sorghum and ≥8.2-fold more than sugarcane. Greater oviposition and infestation of one non-crop host over another was not related to numbers of stems per plant, but was associated with the greater stem diameter and abundance of dry leaf tissue found in Sudangrass, Sorghum bicolor (L.) Moench ssp. drummondi (Nees ex Steud.) de Wet & Harlan, johnsongrass, S. halepense (L.) and barnyardgrass, Echinochloa crus-galli (L.) P. Beauv.; relative to the other weed species in this study. In terms of the crop plants, stalk diameter and quantity of dry leaf tissue were not associated with numbers of eggs or larval entry holes in the choice assays between corn and sorghum, and between sugarcane and corn. While corn has been known as a host of the Mexican rice borer for at least 84 yr, its role in area-wide population dynamics and control efforts has likely been greatly underestimated.     

Plant biology and other issues that relate to the management of water hyacinth: a global perspective with focus on Europe1

Water hyacinth reproduces vegetatively and sexually and seeds are numerous and long‐lived. Rates of vegetative growth are high (weight and numbers can double in less than 1 week in optimal conditions) and governed by temperature and available nutrients. The period from germination to setting seed can be less than 12 weeks. Dispersal of propagules is by flow, man and machines. Biomass of living material is high 90 to > 800 tonnes/ha and comprises around 95% water, and the weed often grows in inaccessible areas. Consequently, social, economic and environmental impacts of water hyacinth are often large and management of the problem becomes very important. However, management of water hyacinth is difficult, and utilization of this weed should not be mistaken as a control measure. Containment and eradication from a catchment may only be accomplished if the invasion is very young, small, isolated and accessible, and if the short‐term resource commitment is high. Most infestations are non‐eradicable because once noticed reaction time is too long. However, in Europe, as the weed invades new areas on the edges of its ecological range, eradication of new infestations could (should) be attempted as this is the most cost effective way to deal with the weed. In addition, pathway shut‐down and awareness campaigns should seek to reduce further new introductions, which, for spread to new regions, are mostly anthropogenic. For established populations the removal of accessible floating biomass can be accomplished using herbicides (if permitted) and by mechanical means. Both are expensive because re‐growth ensures repeated action is necessary. Biological control is a useful tool in warmer climates, less so in cooler climates. It may be more useful in cooler areas if integrated with other management techniques. Additional biological control agents are being studied to improve and broaden the value of biological control. The lack of policies to permit the use of biological control for weeds in Europe limits the ability to manage this weed.     

The native South American crayfishes (Crustacea,Parastacidae): state of knowledge and conservation status

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