Important considerations in the analysis of generation means

Summary The weighted least squares (WLS) procedure has been widely used in the analysis of generation means in biometrical genetics. Two methods to carry out the analysis have been presented in the literature (Mather & Jinks, 1971; Rowe & Alexander, 1980). Neither method identified the factors that need to be taken into account when deciding which procedure to use. This paper examines the fitting of the additive-dominance model using the general principles of least squares analysis and presents the statistical basis of each procedure. Mather & Jink's method, which is more realistic according to genetic theory, is based on the assumption that the populations have nonhomogeneous variances. Rowe & Alexander's method is based on the assumption that the populations have homogeneous variances. In the latter case, there is actually no need to do a WLS analysis. The ordinary least square analysis using the original observations rather than the means, will produce the regression parameter estimates.     

Application of the relevance vector machine to canal flow prediction in the Sevier River Basin

This work addresses management of water for irrigation in arid regions where significant delays between the time of order and the time of delivery present major difficulties. Motivated by improvements to water management that will be facilitated by an ability to predict water demand, it employs a data-driven approach to developing canal flow prediction models using the relevance vector machine (RVM), a probabilistic kernel-based learning machine. A search is performed across model attributes including input set, kernel scale parameter and model update scheme for models providing superior prediction capability using the RVM. Models are developed for two canals in the Sevier River Basin of southern Utah for prediction horizons of up to 5 days.     

Volatile compounds of Psidium salutare (H.B.K.) Berg. fruit

Volatile compounds were isolated from Psidium salutare fruits by simultaneous steam distillation-solvent extraction according to the Likens-Nickerson procedure. Compounds were identified by capillary GC and GC-MS. One hundred and fifty compounds were identified in the aroma concentrate, from which limonene, myrcene, and alpha-pinene were found to be the major constituents in the fruit.     

Classification of Peruvian highland maize races using plant traits

The maize of Latin America, with its enormous diversity, has played an important role in the development of modern maize cultivars of the American continent. Peruvian highland maize shows a high degree of variation stemming from its history of cultivation by Andean farmers. Multivariate statistical methods for classifying accessions have become powerful tools for classifying genetic resources conservation and the formation of core subsets. This study has two objectives: (1) to use a numerical classification strategy for classifying eight Peruvian highland races of maize based on six vegetative traits evaluated in two years and (2) to compare this classification with the existing racial classification. The numerical classification maintained the main structure of the eight races, but reclassified parts of the races into new groups (Gi). The new groups are more separated and well defined with a decreasing accession within group × environment interaction. Most of the accessions from G1 are from Cusco Gigante, all of the accessions from G3 (except one) are from Confite Morocho, and all of the accessions from G7 are from Chullpi. Group G2 has four accessions from Huayleño and four accessions from Paro, whereas G4 has four accessions from Huayleño and five accessions from San Geronimo. Group G5 has accessions from four races, and G6 and G8 formed small groups with two and one accession each, respectively. These groups can be used for forming core subsets for the purpose of germplasm enhancement and assembling gene pools for further breeding.     

基于SNP和InDel标记的巴西木薯遗传多样性与群体遗传结构分析

As a typical tropical crop, cassava (Manihot esculenta Crantz) has the characteristics of drought resistance, barren resistance, high biomass and so on. In addition to being used for food and forage, it can also be used for production, processing and starch extraction. Due to highly heterozygous cassava genome, breeding is more difficult. Enriching the genetic diversity of cassava germplasm, comprehensively evaluating its genetic background and traits, and discovering superior alleles that control excellent traits are of great significance for cassava breeding in the future. In order to analyze the genetic diversity, genetic relationship and population structure of cassava germplasm in Brazil, 7946 SNPs and 1997 InDels molecular markers were used. Population structure analysis was performed by ADMIXTURE software, and principal component analysis was performed by GCTA software. Brazilian cassava was divided into nine subgroups, and was roughly consistent with the results of cluster analysis using PHYLIP. Among them, subgroup 1, subgroup 2, subgroup 4, subgroup 6, and subgroup 8 could be clustered together respectively, while the samples of other subgroups could be roughly clustered, and there was a certain cross between the samples. The genetic diversity of cassava germplasm in Brazil (0.274) was higher than the genetic diversity level of cassava germplasm in China and Nigeria. Subgroup 5 of Brazil cassava had a relatively high genetic diversity (0.29). The genetic differentiation of subgroups was low (the genetic differentiation vary from 0.03 to 0.15), but higher than domestic cassava germplasm. The genetic distance between cassava accessions varied from 0.084 to 0.297, with the average of 0.228. The results of this study can provide a basis for subsequent association analysis to identify great alleles and introduction.     

Lentil (Lens culinaris L.) growth promoting rhizobacteria and their effect on nodulation in coinoculation with rhizobia

Lentil is cultivated in Chilean Mediterranean drylands, in areas with soils that are nutrient depleted and eroded. Inoculation of lentil with rhizobia in co-inoculation with growth promoting rhizobacteria would allow higher biomass and an opportunity for early nodulation and increased nitrogen fixation. The objective of this research was to select rhizosferic bacteria (PGPR) from lentils and to evaluate their effect on lentil nodulation in co-inoculation with rhizobia. Sixty three lentil rhizobacteria isolates where obtained from nine soils in the mediterranean area. These were fingerprinted through BOX-PCR reducing the number to 57 distinct strains. The strains were evaluated for ACCdeaminase activity, IAA production and compatibility with rhizobia. Seventeen strains showed ACC-deaminase activity, all of them synthesized IAA and 38 were compatible with the rhizobia. Ten selected strains were identified as Pseudomonas spp. through 16S rRNA sequencing. The strains were inoculated in lentil seedlings growing on seed germination pouches, to evaluate nodule formation. The strain LY50a increased early nodulation in 85% in comparison to the control inoculated with rhizobia (AG-84) only. In conclusion, bacteria from the rhizosphere from Mediterranean soils of Chile can be used as nodulation promoters in lentils.     

Molecular biology of male gametogenesis

Pollen development has been studied at a molecular level in several systems that are amenable to genetic or transgenic analysis. We have characterized several tomato genes that are expressed late in pollen development. Our goals in this research were 1) to determine the cis- and tran-acting factors that mediate pollen expression, and 2) to determine the functions of the proteins encoded by these genes. We currently favor the hypothesis that pollen-specific gene expression is mediated in a combinatorial manner. Antisense experiments have indicated an important role for the LAT52 protein during pollen hydration.     

Nutrient status of apple leaves not affected by three years of irrigation using partial rootzone drying

Partial rootzone drying (PRD) is a water‐saving irrigation technology that may affect apple (Malus domestica Borkh cv. Golden Delicious/Malling7)‐tree nutrition if applied for an extended period. The objective of this study was to test the hypothesis that long‐term application of PRD causes seasonal changes in macro‐ and micronutrients of apple leaves. The irrigation treatments were: (1) commercial irrigation as control (CI) and (2) PRD. After 3 years of evaluation, PRD irrigation had saved about 3240 m³ of water per hectare. Leaf xylem water potential was slightly lower in the PRD treatment than in CI. The seasonal concentration of macro‐ and micronutrients was comparable between treatments, although significant differences were found at times. The macronutrient concentrations were within the normal range in PRD apple leaves. All micronutrient concentrations were slightly above the normal range except for Zn, which was slightly below the normal range. No physiological disorders associated with plant nutrition were observed on leaves or fruits. Therefore, data suggest that PRD did not alter apple‐tree nutrition during the 3‐year trial. Thus, PRD may be feasible for apple production in Central Mexico. However, further studies need to be conducted in those regions where groundwater is the main water source for irrigation and rain is negligible, particularly during the growing season.     

N<Subscript>2</Subscript>-fixation along a gradient of long-term disturbance in tropical mangroves bordering the gulf of Mexico

Microbial processes are key elements in determining the productivity of mangroves, and reductions in these processes reflect the loss of microbial biodiversity and function due to fabricated disturbances. Because nitrogen is a major limiting nutrient for the productivity of these ecosystems, the goal of this study was to determine profiles of inorganic nitrogen combined with several environmental parameters, all in relation to the degree of long-term hydraulic impairment of a tropical, monospecific black mangrove (Avicennia germinans) forest that showed degradation ranging from total loss of mangrove cover to no disturbance. N₂-fixation, oxygen levels, and nitrite contents decreased significantly with the severity of the disturbance, and almost null levels were reached in the completely degraded zone, whereas salinity achieved very high values. Concomitantly, total N, ammonium, and P contents and ammonia volatilization increased significantly. Pore-water temperature and pH increased moderately. Other soil physical properties (sand, silt, clay, organic matter, and total C), which varied among the sampling sites, were not correlated with the level of disturbance. Principal component analyses, including environmental and biological parameters, suggested that the most significant finding was the considerable loss of N₂-fixation with increasing impairment, which was concomitant with significant increases in volatilization of ammonia and salinity. The results show that microbial N-cycling processes are highly sensitive to salinity and to man-made disturbances that modify the water level and flow.