Brown shrimp (Farfantepenaeus aztecus) density distribution in the Northern Gulf of Mexico: an approach using boosted regression trees

The estuarine‐dependent brown shrimp, Farfantepenaeus aztecus, is a significant commercial fishery and important species in the Gulf of Mexico (GOM) ecosystem as well as being a key component in energy transfer between benthic and pelagic food web systems. Because of the economical and ecological importance of brown shrimp, we developed a spatial population model to identify places of high shrimp density under a set of spatial, environmental and temporal variables in the Northern Gulf of Mexico (NGOM). We used fisheries‐independent data collected by the Southeast Area Monitoring and Assessment Program (SEAMAP) from 1992 to 2007 (summer and fall seasons). The relationship between the predictor variables and shrimp density was modeled using Boosted Regression Trees (BRT). Within the environmental variables included in the model, bottom type and depth of the water column were the most important predictors of shrimp density in the NGOM. Spatial predictions performed using the trained BRT model for summer and fall seasons showed a spatial segregation of shrimp density. During the summer, higher densities were predicted near the Texas and Louisiana coast and during the fall, higher densities were predicted further offshore. The model performed well and allowed successful prediction of brown shrimp hot spots in the NGOM. Model results allow fisheries managers to evaluate the potential impact from fisheries on the resource and to develop future fisheries management strategies, understand the biology of brown shrimp as well as assess the potential impacts of oil spills or climate change.     

Biochemical composition and energy content of six species of phytoplankton used in mariculture of bivalves

Diatoms Thalassiosira pseudonana (Hustedt) Hasle and Heimdal, Chaetoceros calcitrans (Paulsen) Takano and Chaetoceros sp. (Aquaculture Research Corporation), and phytoflagellates Isochrysis galbana Parke, Isochrysis aff. galbana Green (T-Iso) and Tetraselmis suecica (Kylin) Butcher were harvested at exponential and stationary phases of growth and biochemical compositions determined. Moisture content declined in all species at the stationary phase of growth. The siliceous nature of the diatom reduced inherent organic content relative to that of the flagellate. Total pigments were more concentrated in the stationary phases of all species except Tetraselmis. Inclusion of cellular lipid and protein was highest in species of Isochrysis with the carbohydrate constituents of the phytoflagellates presenting a complex mixture of glucose, galactose, mannose, xylose, arabinose, ribose, fucose, and rhamnose. Content of carbohydrates was generally higher in diatoms than phytoflagellates, with glucose the dominant sugar originating from a reserve glucan considered digestible by bivalves. Caloric content of lipid, carbohydrate and protein in phytoplankton allowed for ranking as sources of energy in the following decreasing order: Isochrysis aff. galbana (T-Iso), Isochrysis galbana, Chaetoceros calcitrans, Tetraselmis suecica, Thalassiosira pseudonana, and Chaetoceros sp. (ARC), with all but Thalassiosira exhibiting higher energy levels in the stationary cells.     

The effect of different HUFA enrichment emulsions on the nutritional value of rotifers (Brachionus plicatilis) fed to larval haddock (Melanogrammus aeglefinus).

A feeding study was conducted in the winter 2001 to determine the effects of feeding rotifers (Brachionus plicatilis) enriched with various levels of essential fatty acids on the growth and survival of haddock larvae (Melanogrammus aeglefinus). Rotifer enrichment treatments were: 1) mixed algae, 2) high DHA (docosahexaenoic acid, 22:6n-3), 3) high DHA and EPA (eicosapentaenoic acid, 20:5n-3), and 4) DHA, EPA, and AA (arachidonic acid, 20:4n-6). Larvae were fed rotifers enriched with the different treatments from days 1 to 16 post-hatch. From day 17 until 25 all treatment groups were fed rotifers reared on mixed algae and then weaned onto the International Council for Exploration of the SEA (ICES) Standard Reference Weaning diet (http://allserv.rug.ac.t/aquaculture/rend/rend.htm) over a five day period. The experiment was terminated on day 41 post-hatch. The enrichment treatments affected the fatty acid composition of the rotifers and correlated with the accumulation of these fatty acids in the haddock larvae. However, no significant differences in larval growth or survival to 40 days post hatch were detected, suggesting that all treatments provided the minimal essential fatty acid requirements for haddock.     

Photosynthetic suspended-growth systems in aquaculture

Standardized evaluation and rating of biofilters for aquaculture should be assessed in the context of the economic efficiency of ecological services (waste assimilation, nutrient recycling, and internal food production) provided by earthen ponds, and the availability and cost of land, water, and electrical energy resources required to support particular classes of production systems. In photosynthetic suspended-growth systems, water quality control is achieved by a combination of natural and mechanical processes. Natural processes include photosynthesis of oxygen, algal nutrient uptake, coupled nitrification–denitrification, and organic matter oxidation; mechanical processes include aeration and water circulation. Ammonia is controlled by a combination of phytoplankton uptake, nitrification, and immobilization by bacteria. Unlike biofilters for recirculating aquaculture systems, unit processes are combined and are an integral part of the culture unit. The important design and operational considerations for photosynthetic suspended-growth systems include temperature effects, aeration and mixing, quantity and quality of loaded organic matter, and fish water quality tolerance limits. The principle advantages of photosynthetic suspended-growth systems are lower capital costs relative to other recirculating aquaculture systems and increased control over stock management relative to conventional static ponds. The main disadvantage is the relatively low degree of control over water quality and phytoplankton density, metabolism, and community composition relative to other recirculating aquaculture systems. Examples of photosynthetic suspended-growth systems include semi-intensive ponds, intensively aerated outdoor lined ponds, combined intensive–extensive ponds, partitioned aquaculture systems, greenwater tanks, greenwater tanks with solids removal, and greenwater recirculating aquaculture systems.     

Effect of bleeding on the quality of amberjack Seriola dumerili and red sea bream Pagrus major muscle tissues during iced storage

The effect of bleeding on white muscle quality in amberjack and red sea bream was evaluated by measuring ATP-related compounds, volatile basic nitrogen (VBN), and the trimethylamine (TMA) content. The freshness was evaluated by the K value, and the degree of spoilage was elucidated by VBN and TMA. ATP was rapidly converted to ADP and AMP in the muscle and IMP was the main product of ATP degradation during iced storage. For both species, the IMP content was higher in the muscles of fish that were bled than in those unbled during iced storage. Conversely, the K value and the levels of hypoxanthine (Hx) and VBN were higher in the muscle tissue of unbled fish than in the bled tissue of both species. Similarly, the TMA content was higher in the unbled muscle tissues of both species after a week of storage.     

Consumer perception versus scientific evidence of farmed and wild fish: exploratory insights from Belgium

The increasing number of marketable fish being supplied from aquaculture is a response to the increasing demand for healthy food and is filling the gap left by depleting natural fish stocks. Little is known about the awareness and perception of the consumer in terms of farmed fish versus fish from capture fisheries. The consumer's subjective point of view is of overriding importance for the production system and product acceptance as well as for future market success. In this paper consumer perception in Belgium is explored and compared against scientific evidence of farmed versus wild fish. Primary data were collected through a consumer survey (April 2003) and focus group discussions (May 2004) with Belgian consumers. The majority of the consumer sample reported no perceived differences between farmed versus wild fish. However, mean perception scores were slightly in favour of wild fish on the attributes taste, health and nutritious value, in particular among consumers aged 55 years and older. The availability of farmed fish was perceived to be better than that of wild fish, while the consumer's perception of safety did not differ between farmed and wild fish. The focus group discussions indicated that consumers’ opinions and beliefs about farmed fish are mainly based on emotion and image transfer from intensive terrestrial livestock production rather than on awareness and factual knowledge of aquaculture.

Model uncertainty in the ecosystem approach to fisheries

Fisheries scientists habitually consider uncertainty in parameter values, but often neglect uncertainty about model structure, an issue of increasing importance as ecosystem models are devised to support the move to an ecosystem approach to fisheries (EAF). This paper sets out pragmatic approaches with which to account for uncertainties in model structure and we review current ways of dealing with this issue in fisheries and other disciplines. All involve considering a set of alternative models representing different structural assumptions, but differ in how those models are used. The models can be asked to identify bounds on possible outcomes, find management actions that will perform adequately irrespective of the true model, find management actions that best achieve one or more objectives given weights assigned to each model, or formalize hypotheses for evaluation through experimentation. Data availability is likely to limit the use of approaches that involve weighting alternative models in an ecosystem setting, and the cost of experimentation is likely to limit its use. Practical implementation of an EAF should therefore be based on management approaches that acknowledge the uncertainty inherent in model predictions and are robust to it. Model results must be presented in ways that represent the risks and trade‐offs associated with alternative actions and the degree of uncertainty in predictions. This presentation should not disguise the fact that, in many cases, estimates of model uncertainty may be based on subjective criteria. The problem of model uncertainty is far from unique to fisheries, and a dialogue among fisheries modellers and modellers from other scientific communities will therefore be helpful.     

Fine-scale vegetation patches decline in size and cover with increasing rainfall in Australian savannas

Fine-scale vegetation patches (<5 m in width) are critically important in many landscapes because they function to obstruct surface flows of water and wind. These obstructions increase the infiltration of runoff and the capture of nutrients in runoff sediments and in wind-blown soil and litter. The importance of redistribution of runoff into runon patches from spaces between patches (fetches) is likely to be greater in drier than in wetter environments. In this paper we examine the hypothesis that the ratio of fetch to patch decreases as rainfall increases, and that this trend will be most evident on intermediate-textured soils because these soils are more prone to runoff. We measured fine-scale patches on 38 sites with sand, loam or clay soils. Sites were located along a 1000-mm rainfall gradient in the savannas of northern Australia. The width and intercept length of patches and the fetch between patches was measuring along line transects of 100–120 m oriented down slope. We found that the ratio of fetch to patch area did not decrease with decreasing rainfall, but increased on both sand and loam soils. This result was because with increasing rainfall mean spacing between patches disproportionally increased while mean patch size and cover declined. The cover of patches was negatively correlated with tree canopy cover, which significantly increased with rainfall. This negative correlation suggests that in higher rainfall savannas the size and spacing of ground-layer patches is controlled by the tree layer, and that as rainfall decreases this control decreases and runoff-runon processes increasingly structure the landscape. For savannas on clay soils these trends were not significant except that on the highest rainfall sites the cover of ground-layer patches was nearly 100% while trees were absent.     

Soil saturation effects on forest dynamics: scaling across a southern boreal/northern hardwood landscape

Patch modeling can be used to scale-up processes to portray landscape-level dynamics. Via direct extrapolation, a heterogeneous landscape is divided into its constituent patches; dynamics are simulated on each representative patch and are weighted and aggregated to formulate the higher level response. Further extrapolation may be attained by coarsening the resolution of or lumping environmental data (e.g., climatic, edaphic, hydrologic, topographic) used to delimit a patch.Forest patterns at the southern boreal/northern hardwood transition zone are often defined by soil heterogeneity, determined primarily by the extent and duration of soil saturation. To determine how landscape-level dynamics predicted from direct extrapolation compare when coarsening soil parameters, we simulated forest dynamics for soil series representing a range of drainage classes from east- central Maine. Responses were aggregated according to the distribution of soil associations comprising a 600 ha area based on local- (1:12,000), county- (1:120,000) and state- (1:250,000) scale soil maps. At the patch level, simulated aboveground biomass accumulated more slowly in poorer draining soils. Different soil series yielded different communities comprised of species with various tolerances for soil saturation. When aggregated, removal of waterlogging caused a 20–60% increase in biomass accumulation during the first 50 years of simulation. However, this early successional increase and the maximum level of biomass accumulation over a 200 year period varied by as much as 40% depending on the geospatial data. This marked discrepancy suggests caution when extrapolating with forest patch models by coarsening parameters and demonstrates how rules used to rescale environmental data need to be evaluated for consistency.