Small cetacean captures in Peruvian artisanal fisheries: High despite protective legislation

We detail the first direct, at sea monitoring of small cetacean interactions with Peruvian artisanal drift gillnet and longline fisheries. A total of 253 small cetaceans were captured during 66 monitored fishing trips (Gillnet: 46 trips; Longline: 20 trips) from the port of Salaverry, northern Peru (8^o14′S, 78^o59′W) from March 2005 to July 2007. The most commonly captured species were common dolphins (Delphinus spp.) (47%), dusky dolphins (Lagenorhynchus obscurus) (29%), common bottlenose dolphins (Tursiops truncatus) (13%) and Burmeister’s porpoises (Phocoena spinipinnis) (6%). An estimated 95% of common dolphin bycatch was of long-beaked common dolphins (Delphinus capensis). Overall bycatch per unit effort for gillnet vessels (mean ± sd) was estimated to be 0.65 ± 0.41 animals.set⁻¹ (range 0.05-1.50) and overall catch (bycatch and harpoon) was 4.96 ± 3.33 animals.trip⁻¹ (range 0.33-13.33). Based upon total fishing effort for Salaverry we estimated the total annual average small cetacean bycatch by gillnet vessels as 2412 animals.year⁻¹ (95% CI 1092-4303) for 2002-2007. This work indicates that, in at least one Peruvian port, bycatch and harpooning of small cetaceans persist at high levels and on a regular basis, particularly in driftnet vessels, despite the existence since the mid-1990s of national legislation banning the capture of marine mammals and commerce in their products. It is concluded that the coast of Peru is likely still one of the world’s principal areas for concern regarding high small cetacean bycatch and there is clearly an urgent need to increase the geographic scope of observer effort to elucidate the full magnitude of this issue.     

Metal Concentrations in Organs of the Clam Amiantis umbonella and Their Use in Monitoring Metal Contamination of Coastal Sediments

The aim of this study was to evaluate the use of metal concentrations in clam organs to monitor metal contamination in coastal sediments. The concentrations of Cd, Cr, Cu, Hg, Ni, Pb, V, and Zn were measured in the kidneys, gonads, mantles, gills, digestive gland, and hearts of the infaunal clam Amiantis umbonella collected from a contaminated site near desalination and power plant discharges, and a reference site in Kuwait Bay. Metal concentrations in sediment and sediment pore water were also measured at the collection sites of individual clams at the contaminated site. The concentrations of all metals in all organs (except Zn in the digestive gland) were significantly higher in clams from the contaminated site than from the reference site. Metal concentrations in several organs in A. umbonella from the contaminated site were correlated with those in the sediments and pore waters to which they were exposed. However, fresh weights of gonads, gills, and mantles were significantly lower in clams from the contaminated site compared to the reference site, indicating that the observed elevated concentrations of metals in the organs of clams from the contaminated site largely reflect lower organ weights, rather than higher metal loads, and that these organs in A. umbonella and perhaps other clams are not appropriate for use as biomonitors of metal contamination. Metal concentrations in clam kidneys showed a wide dynamic range with respect to environmental contamination and kidney weight was not variable. Therefore, metal concentrations in clam kidneys provide a reliable biomonitor of contaminant metals in coastal marine sediments.     

Beyond the wetland border: Estimating the impact of roads for two species of water snakes

We used models integrating road maps, traffic volume, and snake movements to examine the potential for roads to contribute to mortality in two species of water snakes that differ in their vagility, use of terrestrial habitats, and conservation status. Road networks and traffic volumes typical of three regions in Indiana, USA, may account for mortality of 14-21% of the population per year in the more vagile, terrestrial, and imperiled copperbelly water snake (Nerodia erythrogaster neglecta) but only 3-5% mortality in the more sedentary, aquatic, and common northern water snake (Nerodia sipedon). The majority (>91%) of road crossings and associated mortality are predicted to occur during overland migrations to other wetlands, suggesting roads bisecting travel routes between wetlands may function as mortality sinks. Our models highlight the proportionately greater risk of mortality for the more vagile and imperiled species, N. e. neglecta, and suggest current wetland conservation strategies that focus on the wetland alone are unlikely to adequately protect wetland biodiversity from certain types of anthropogenic habitat modification. What is needed is a landscape approach to wetland conservation that considers not only the quality of wetlands and nearby terrestrial habitats, but also ensures that terrestrial corridors between wetlands remain permeable and offer safe passage for wildlife.     

The effect of human activity on birds at a coastal bay

I examined the direct and indirect effects of human activity on birds at a coastal bay refuge along the Atlantic Coast. Over the year, human activity varied at different sample sites on the refuge, but people were present on part of the refuge every day, although activity was concentrated on designated paths around a freshwater pond and at a fishing pier. On the refuge (exclusive of the ponds) people were present at the sample sites 17% of the time, birds were present 42% of the time when people were present, but birds were present 72% of the time when people were absent. Human activities, such as jogging or grass mowing, which involved rapud movement or close proximity to roosting birds, usually caused them to flush. Slow-walking bird watchers and clammers did not usually cause birds to flush. Gulls and terns were least affected as they usually relanded where they had been, ducks usually flushed and flew to the centre of the pond, and herons, egrets and shorebirds were most disturbed and flushed to distant marshes. These results suggest that if management objectives include providing roosting areas for migrating shorebirds then some areas must be protected from close and fast-moving human activities.     

Metal Enrichment in Zlatna, a Romanian Copper Smelting Town

A preliminary survey of metal concentrations in soil and vegetable samples was undertaken in the town of Zlatna, in western Romania that is dominated by a large copper smelter. One data set (town survey) consisted of soil samples taken from sites both in the centre of the town (near smelter and school grounds) and the outskirts and included those from roadside verges and wooded areas. The second data set consisted of soil samples taken from vegetable garden plots together with an associated sample of spring onion (Allium fistulosum). The aim of this study was to measure levels of the elements Cu, Zn, Pb, Cd and As in soil samples from Zlatna in general, and to assess their uptake into home grown vegetables and thus into the food chain. Concentrations of the elements of interest in soils and vegetables peaked southwest of the smelter and also in soils near the school in the town centre. Concentrations of elements in soils from the town, including those near the school, had the following ranges: Cu, 41–12,000, geometric mean 863 μg/g; Zn, 89–15,600, geometric mean 920 μg/g; Pb, 32–7860, geometric mean 740 μg/g; Cd, BDL–329.5, geometric mean 3.35 μg/g; As, 15–1440 geometric mean 223 μg/g; Thus, the residents of Zlatna are potentially exposed to levels of these elements that are higher than the recommended guideline values. Mean concentrations of the toxic elements in spring onions were: Cu, 10.2; Zn, 95; Pb, 11; Cd, 0.8; As 2.6 μg/g dry weight.     

Nutritional and physiological responses of young growing rats to diets containing raw cowpea seed meal,protein isolate (globulins), or starch

The nutritional and physiological effects of raw cowpea (Vigna unguiculata (L) Walp.) seed meal, protein isolate (globulins), or starch on the metabolism of young growing rats have been evaluated in 14-day trials. Wet and dry weight gain, feed conversion efficiency, and lipid and protein accretion were significantly reduced as a result of inclusion of seed meal, globulins, or starch in the diet, with growth retardation being most marked with the seed meal. The proportional weights of the small intestine and pancreas were increased by meal diets, and serum cholesterol levels were slightly reduced. The globulins and raw starch also increased relative small intestine weights but had no effect on the pancreas or serum constituents. The effects of cowpeas on rats appeared to be due primarily to the combined actions of globulins, resistant starches, protease inhibitors, and possibly fiber and non-starch polysaccharides on intestinal and systemic metabolism.     

Mutations in a human ROBO gene disrupt hindbrain axon pathway crossing and morphogenesis

The mechanisms controlling axon guidance are of fundamental importance in understanding brain development. Growing corticospinal and somatosensory axons cross the midline in the medulla to reach their targets and thus form the basis of contralateral motor control and sensory input. The motor and sensory projections appeared uncrossed in patients with horizontal gaze palsy with progressive scoliosis (HGPPS). In patients affected with HGPPS, we identified mutations in the ROBO3 gene, which shares homology with roundabout genes important in axon guidance in developing Drosophila, zebrafish, and mouse. Like its murine homolog Rig1/Robo3, but unlike other Robo proteins, ROBO3 is required for hindbrain axon midline crossing.     

High-throughput mapping of a dynamic signaling network in mammalian cells

Signaling pathways transmit information through protein interaction networks that are dynamically regulated by complex extracellular cues. We developed LUMIER (for luminescence-based mammalian interactome mapping), an automated high-throughput technology, to map protein-protein interaction networks systematically in mammalian cells and applied it to the transforming growth factor-beta (TGFbeta) pathway. Analysis using self-organizing maps and k-means clustering identified links of the TGFbeta pathway to the p21-activated kinase (PAK) network, to the polarity complex, and to Occludin, a structural component of tight junctions. We show that Occludin regulates TGFbeta type I receptor localization for efficient TGFbeta-dependent dissolution of tight junctions during epithelial-to-mesenchymal transitions.     

Graduate students' teaching experiences improve their methodological research skills

Science, technology, engineering, and mathematics (STEM) graduate students are often encouraged to maximize their engagement with supervised research and minimize teaching obligations. However, the process of teaching students engaged in inquiry provides practice in the application of important research skills. Using a performance rubric, we compared the quality of methodological skills demonstrated in written research proposals for two groups of early career graduate students (those with both teaching and research responsibilities and those with only research responsibilities) at the beginning and end of an academic year. After statistically controlling for preexisting differences between groups, students who both taught and conducted research demonstrate significantly greater improvement in their abilities to generate testable hypotheses and design valid experiments. These results indicate that teaching experience can contribute substantially to the improvement of essential research skills.