Genome-wide association mapping and genomic prediction of Fusarium head blight resistance,heading stage and plant height in winter rye (Secale cereale)

Rye is a multi-purpose cereal crop grown in Central and Eastern Europe as well as in Western Canada. Fusarium head blight (FHB) is one of the diseases that have a severe negative impact on rye, but knowledge about FHB resistance at the genomic level is totally missing in rye. The objective of this study was to elucidate the genetic architecture of FHB resistance in winter rye using genome-wide association (GWA) mapping complemented by genomic prediction (GP) in comparison with marker-assisted selection (MAS). Additionally, plant height and heading stage were analysed. A panel of 465 S₁-inbred lines of winter rye was phenotyped in three environments (location–year combinations) for FHB resistance by inoculation with Fusarium culmorum and genotyped with a 15k SNP array. Significant genotypic variation and high heritabilities were found for FHB resistance, heading stage and plant height. FHB did not correlate with heading stage, but was moderately correlated with plant height (r = −.52, p < .001) caused by some susceptible short inbred lines. The GWA scan identified 15 QTL for FHB resistance that jointly explained 74% of the genotypic variance. In addition, we detected 11 QTL for heading stage and 8 QTL for plant height, explaining 26% and 14% of the genotypic variance, respectively. A genome-wide prediction approach resulted in 44% higher prediction abilities than marker-assisted selection for FHB resistance. In conclusion, genomic approaches appear promising to improve and accelerate breeding for complex traits in winter rye.     

Invasion and persistence of Mycoplasma bovis in embryonic calf turbinate cells

Mycoplasma bovis is a wall-less bacterium causing bovine mycoplasmosis, a disease showing a broad range of clinical manifestations in cattle. It leads to enormous economic losses to the beef and dairy industries. Antibiotic treatments are not efficacious and currently no efficient vaccine is available. Moreover, mechanisms of pathogenicity of this bacterium are not clear, as few virulence attributes are known. Microscopic observations of necropsy material suggest the possibility of an intracellular stage of M. bovis. We used a combination of a gentamicin protection assay, a variety of chemical treatments to block mycoplasmas entry in eukaryotic cells, and fluorescence and transmission electron microscopy to investigate the intracellular life of M. bovis in calf turbinate cells. Our findings indicate that M. bovis invades and persists in primary embryonic calf turbinate cells. Moreover, M. bovis can multiply within these cells. The intracellular phase of M. bovis may represent a protective niche for this pathogen and contribute to its escape from the host’s immune defense as well as avoidance of antimicrobial agents.

Electronic supplementary material

The online version of this article (doi:10.1186/s13567-015-0194-z) contains supplementary material, which is available to authorized users.     

Effects of azadirachtin injection in litchi trees (Litchi chinensis Sonn.) on the litchi stink bug (Tessaratoma papillosa Drury) in northern Thailand

The litchi stink bug (Tessaratoma papillosa Drury) is one of the major pests of litchi (Litchi chinensis Sonn.) in tropical Asia. Systemic effects of azadirachtin (at a concentration of 0.17 g active ingredient per centimeter trunk diameter) on T. papillosa were examined by injecting the dissolved product (NeemAzal U) into the trunks of four caged litchi trees in an orchard in northern Thailand. Four untreated caged trees served as control. Mean weekly mortality rates of individuals released on the treatment date (initially 55 nymphs per cage) were significantly higher in the treatment cages (55%) than in the control cages (10%) between the second and the fourth week of the experiment. Mortality in the treatment cages was probably due to both toxic effects (ecdysis inhibition) and antifeedant effects (starvation). Weekly mortality rates of individuals released 2 weeks after tree injection (initially 20 nymphs per cage) were not significantly different between treatment and control cages, indicating a weakening effect of azadirachtin, 2–3 weeks after tree injection. Azadirachtin concentration in ripe fruits was less than 5 mg/kg fruit pulp 18 days after tree injection. Although the results of this study are not yet sufficient for practical recommendations, they provide indications of alternative options for integrated pest management approaches. The azadirachtin tree injection method should also be tested against other pests of litchi, and of fruit trees in general.     

Distribution of phosphorus in size fractions of sandy soils with different fertilization histories

A major challenge in sustainable crop management is to ensure adequate P supply for crops, while minimizing losses of P that could negatively impact water quality. The objective of the present study was to investigate the effects of long‐term applications of different levels of mineral fertilizers and farmyard manure on (1) the availability of P, (2) the relationship between soil C, N, and P, and (3) the distribution of inorganic and organic P in size fractions obtained by wet sieving. Soil samples were taken from the top 20 cm of a long‐term (29 y) fertilization trial on a sandy Cambisol near Darmstadt, SW Germany. Plant‐available P, determined with the CAL method, was little affected by fertilization treatment (p < 0.05) and was low to optimal. The concentration of inorganic and organic P extracted with a NaOH‐EDTA solution (P_NaOH‐EDTA) averaged about 350 mg (kg dry soil)^–1, with 42% being in the organic form (P_o). Manure application tended to increase soil C, N, and P_o concentrations by 8%, 9%, and 5.6%, respectively. Across all treatments, the C : N : P_o ratio was 100 : 9.5 : 2 and was not significantly affected by the fertilization treatments. Aggregate formation was weak due to the low clay and organic‐matter content of the soil, and the fractions > 53 μm consisted predominantly of sand grains. The different fertilization treatments had little effect on the distribution of size fractions and their C, N, and P contents. In the fractions > 53 μm, P_NaOH‐EDTA ranged between 200 and 300 mg kg^–1, while it reached 1260 mg kg^–1 in the fraction < 53 μm. Less than one third of P_NaOH‐EDTA was present as P_o in the fractions > 53 μm, while P_o accounted for 70% of P_NaOH‐EDTA in the smallest fraction (< 53 μm). Therefore, 16% and 28% of P_NaOH‐EDTA and P_o, respectively, were associated with the smallest fraction, even though this fraction accounted for < 5% of the soil mass. Therefore, runoff may cause higher P losses than the soil P content suggests in this sandy soil with a weak aggregate formation. Overall, the results indicate that manure and mineral fertilizer had similar effects on soil P fractions.     

Effects of fertilizer type and rate on labile soil fractions of a sandy Cambisol—long‐term and short‐term dynamics

The application of density fractionation is an established technique, but studies on short‐term dynamics of labile soil fractions are scarce. Objectives were (1) to quantify the long‐term and short‐term dynamics of soil C and N in light fraction (LFOC, LFON, ρ ≤ 2.0 g cm^–3) and microbial biomass C (C_mic) in a sandy Cambisol as affected by 28 y of different fertilization and (2) to determine the incorporation of C₄‐C into these labile fractions during one growing season of amaranth. The treatments were: straw incorporation plus application of mineral fertilizer (MSI) and application of farmyard manure (FYM) each at high (MSI_H, FYM_H, 140–150 kg N ha^–1 y^–1) and low (MSI_L, FYM_L, 50–60 kg N ha^–1 y^–1) rates at four field replicates. For all three sampling dates in 2008 (March, May, and September), stocks of LFOC, LFON and C_mic decreased in the order FYM_H > FYM_L > MSI_H, MSI_L. However, statistical significance varied markedly among the sampling dates, e.g., with LFOC being significantly different (p ≤ 0.05) in the order given above (sampling date in March), significantly different depending on the fertilizer type (May), or nonsignificant (September). The high proportion of LFOC on the stocks of soil organic C (45% to 55%) indicated the low capacity of soil‐organic‐matter stabilization on mineral surfaces in the sandy Cambisol. The incorporation of C₄‐C in the LFOC during one growing season of amaranth was small in all four treatments with C₄‐LFOC ranging from 2.1% to 3.0% of total LFOC in March 2009, and apparent turnover times of C₃‐derived LFOC ranged from 21 to 32 y for the sandy soils studied. Overall, our study indicates that stocks of LFOC and LFON in a sandy arable soil are temporarily too variable to obtain robust significant treatment effects of fertilizer type and rate at common agricultural practices within a season, despite the use of bulked six individual cores per plot, a common number of field replicates of four, and a length of treatments (28 y) in the order of the turnover time (21–32 y) of C₃‐derived LFOC.     

温度与有机负荷对猪粪厌氧发酵过程的影响

为提高畜禽养殖场沼气工程能源利用效率,降低工程运行成本.该文通过全混式半连续试验,以猪粪为发酵原料,研究不同温度(20、28、38℃)和有机负荷(0.3、1.3、2.3、3.3、4.3 kg/(m3·d))条件下,甲烷产率、挥发性脂肪酸(volatile fatty acid,VFA)及总无机碳(total inorganic carbon,TIC)的变化特征.结果表明:20℃条件下,反应器启动缓慢,甲烷产率低.当有机负荷增加全1.3 kg/(m3·d)以上时,反应器运行不稳定,需外加NaHCO3调节pH值;在28℃与38℃条件下,各有机负荷甲烷产率无明显差异,但是在较高有机负荷3.3和4.3 kg/(m3·d)下运行时,28℃条件下产生挥发性脂肪酸积累的现象,系统缓冲能力缺乏,VFA/TIC值分别达到0.4和0.6.当实际沼气工程低负荷率运行时,可选择28℃作为发酵温度,以达到节省能源、提高沼气工程经济效益的目的.该研究可为实际沼气工程运行管理提供数据参考.     

Pattern of seroreactivity against feline foamy virus proteins in domestic cats from Germany

The prevalence of feline foamy virus (FFV, spumaretrovirinae) in naturally infected domestic cats ranges between 30 and 80% FFV positive animals depending on age, sex and geographical region analyzed. Two serotypes have been reported for FFV designated FUV7-like and F17/951-like. Serotype-specific neutralization has been shown to correlate with sequence divergence in the surface (SU) domain of the envelope protein (Env). We analyzed a serum collection of 262 domestic cat sera from Germany using a GST-capture ELISA setup screening for Gag and Bet specific antibodies and identified 39% FFV positive animals. Due to the heterogeneity of the serological samples, cut-offs for Gag and Bet reactivity had to be experimentally determined since application of calculated cut-off values yielded some false-positive results; the new cut-off values turned out to be also fully applicable to a previous study. Using the already established FUV7 ElpSU antigen and the newly cloned and produced F17/951 ElpSU antigen, both consisting of the corresponding ectodomains of the envelope leader protein (Elp) and SU protein, we aimed at the detection of Env-specific antibodies and discrimination between the two known FFV serotypes within the diagnostic FFV ELISA. We validated the ElpSU antigens using cat reference sera of known serotype and screened with this assay domestic cat sera from Germany. Use of the FUV7- and F17/951 ElpSU antigens in ELISA resulted in the detection of Env-specific antibodies in both cat reference sera and sera from domestic cats in Germany, but failed to allow serotyping at the same time.