An approach to extrapolate categorical agricultural soil data to nonmapped areas using majority vote

Soil maps are indispensable base material for planning processes and risk analyses. For many studies, however, area‐wide uniformly scaled soil maps are not available. Our objective was to develop a GIS‐based method for providing information for NoData areas of the Medium‐Scale Agricultural Site Mapping (MMK). NoData areas represent nonagricultural zones, in this case especially forests. A grid‐based methodology for extrapolating soil mapping units of agricultural areas to the entire landscape was developed and tested in Mecklenburg–Western Pomerania (total area 23,170 km²). The principle of the extrapolation method is based on a statistical neighborhood analysis implemented by the moving‐window technology considering selected site features as geology, altitude, and relief energy. Results were illustrated exemplarily for soil‐moisture conditions, which are expressed as “hydromorphy association types”. Four different indicators were derived to ensure a spatially differentiated evaluation of the extrapolation quality. The precision with which it is possible to extrapolate already mapped MMK units in terms of the hydromorphy association type was used to validate the extrapolation method. Evaluation of the results was based on the percentage of Correctly Extrapolated Pixels (CEP), which were derived from a confusion matrix. The percentage of CEP was 26% when the 15 single classes of the hydromorphy association type were considered separately. The percentage of CEP rose up to 65% after grouping the hydromorphy association types into three practically combined categories. It could be demonstrated that the extrapolation technique applied represented an objective and relatively fast and cost‐effective method to obtain an area‐wide MMK mapping.     

Growth performance of hybrid striped bass (Morone chrysops × M. saxatilis) fed with commercial pike perch and trout diets

Two commercial trout diets (Oncorhynchus mykiss) and one commercial pike perch diet (Sander lucioperca) were fed to hybrid striped bass (Morone chrysops × M. saxatilis) (mean initial weight ± SD of 60.7 g ± 12.1; mean initial length SD of 17.2 cm ± 1.1) for 69 days at rations of approximately 1% average body weight. While final body weight (FBW), final length (FBL) and condition factor (Cf) were not significantly influenced by diets, specific growth rate (SGR) in hybrid striped bass fed with the pike perch diet (1.15) was significantly higher than those fed with either of the two trout diets (1.04 and 1.07). The feed conversion ratio (FCR) in hybrid striped bass fed with the pike perch diet (1.0) was significantly lower than the FCR in hybrid striped bass fed with either of the two trout diets (1.1 and 1.2). When hybrid striped bass (mean initial body weight: 65.7 ± 4.5 and 127.7 ± 2.9 g) were fed with the pike perch diet twice per day until satiation for 52 days, the SGR was 1.7 and 1.15% d^?1 in fishes with an average body weight of 116 and 183 g, respectively. Present results demonstrate that growth performance in hybrid striped bass can be improved when fishes are fed with commercial pike perch diets rather than using commercial trout diets as is the current practice.

     

Transmission of Tomato chlorotic dwarf viroid by Myzus persicae assisted by Potato leafroll virus

Journal of Plant Diseases and Protection - In this study, we have shown Myzus persicae transmissibility of Tomato chlorotic dwarf viroid (TCDVd) by exposing Potato leafroll virus (PLRV) plus TCDVd...     

Geographical BSE risk assessment and its impact on disease detection and dissemination

Bovine Spongiform Encephalopathy (BSE) rapidly evolved into an issue of major public concern particularly when, in 1996, evidence was provided that this disease had crossed the species barrier and infected humans in the UK with what has become known as "variant Creutzfeldt Jakob Disease" (vCJD). The aim of this paper is to describe the European Geographical BSE risk assessment (GBR) that was successfully used for assessing the qualitative likelihood that BSE could be present in a country where it was not yet officially recognized. It also discusses how this can lead to risk-based and therefore preventive management of BSE at national and international levels. The basic assumption of the GBR method is that the BSE agent is initially introduced into a country's domestic cattle production system through the importation of contaminated feedstuffs or live cattle. This is referred to as an "external challenge". The ability of the system to cope with such a challenge is, in turn, referred to as its "stability": a stable system will not allow the BSE agent to propagate and amplify following its introduction, while an unstable system will. The BSE-status of a country assessed by this system was used by the European Commission as the basis for trade legislation rules for cattle and their products. The GBR was an invaluable tool in evaluating the potential global spread of BSE as it demonstrated how a disease could be transferred through international trade. This was shown to be a critical factor to address in reducing the spread and amplification of BSE throughout the world. Furthermore, GBR resulted in the implementation of additional measures and management activities both to improve surveillance and to prevent transmission within the cattle population.     

In vivo and in vitro efficacy of sainfoin (Onobrychis viciifolia) against Eimeria spp in lambs

The effect of sainfoin (Onobrychis viciifolia) against ovine coccidia was evaluated in vivo and in vitro. In 3 in vivo trials weaned lambs were allocated into two treatment groups receiving diets with either lucerne (Medicago sativa) or sainfoin. During the trials, which lasted for 7 (trial 1) or 8 weeks (trials 2 and 3), oocysts per gram of faeces (OPGs), faecal scores and weight gain were recorded. In two of the experiments (trials 1 and 3) a reduction in the mean oocyst excretion rates was observed, starting three to four weeks after sainfoin hay feeding. This reduction ranged between 21.3% (trial 1) and 61.7% (trial 3) compared to the control values. As a result, a decrease in the total number of oocysts excreted (expressed as the mean area under the curve of the OPG) was observed from week 4 to the end of the two trials, respectively (trial 1: 42.6% reduction, p=0.05; trial 3: 52.4% reduction, p=0.06). The results did not show any significant diet effect on lamb growth rates and faecal scores. In the in vitro experiments the effect of 39 sainfoin extracts were tested in an oocyst sporulation inhibition assay. The Eimeria oocysts sporulation inhibition throughout the experiments did not exceed 10.7%, showing that extracts of this forages do not have a significant inhibitory effect on Eimeria oocyst sporulation. This was an initial attempt to investigate a possible anticoccidial effect of sainfoin and further studies are needed in order to better understand its mode of action against Eimeria.     

A proposal of interpretive criteria for cefoperazone applicable to bovine mastitis pathogens

The correct assessment of mastitis pathogens for their susceptibility/resistance to cefoperazone is currently hampered by the lack of harmonized test conditions and interpretive criteria. The aim of this study was to provide a proposal for clinical breakpoints of cefoperazone which are applicable to Staphylococcus aureus, coagulase-negative staphylococci, Escherichia coli, Streptococcus agalactiae, Streptococcus dysgalactiae and Streptococcus uberis from cases of bovine mastitis and better reflect the situation in the bovine udder than breakpoints adopted from human medicine. For this, pharmacological data and clinical efficacy data of the documents submitted for approval of cefoperazone have been revisited. In addition, 1086 bacterial pathogens of the aforementioned six species/groups collected in Germany and in the USA during recent years were tested in parallel for their cefoperazone MICs and the zone diameters using a 75 μg disk. Subsequently, MICs were plotted against zone diameters. Based on the pharmacological data, the clinical efficacy and the microbiological data, a proposal was made for veterinary-specific breakpoints which classify members of the aforementioned species/groups as (a) susceptible to cefoperazone when their MIC is ≤ 2 μg/ml and their zone diameters are ≥ 27 mm (staphylococci or E. coli) or ≥ 21 mm (streptococci), (b) intermediate when their MIC is 4 μg/ml and their zone diameters are 22-26 mm (staphylococci or E. coli) or 16-20mm (streptococci), and (c) resistant when their MIC is ≥ 8 μg/ml and their zone diameters are ≤ 21 mm (staphylococci or E. coli) or ≤ 15 mm (streptococci).     

The p40* adhesin pseudogene of Mycoplasma bovis

An analogue of the adhesin gene p40 of Mycoplasma agalactiae was found in Mycoplasma bovis. Nucleotide sequence analysis of the p40* gene in M. bovis revealed the presence of a large deletion involving a frameshift that causes premature truncation of the translated protein, indicating that p40* exists as a pseudogene in M. bovis.     

Phylogenetic relationship of equine Actinobacillus species and distribution of RTX toxin genes among clusters

Equine Actinobacillus species were analysed phylogenetically by 16S rRNA gene (rrs) sequencing focusing on the species Actinobacillus equuli, which has recently been subdivided into the non-haemolytic A. equuli subsp. equuli and the haemolytic A. equuli subsp. haemolyticus. In parallel we determined the profile for RTX toxin genes of the sample of strains by PCR testing for the presence of the A. equuli haemolysin gene aqx, and the toxin genes apxI, apxII, apxIII and apxIV, which are known in porcine pathogens such as Actinobacillus pleuropneumoniae and Actinobacillus suis. The rrs-based phylogenetic analysis revealed two distinct subclusters containing both A. equuli subsp. equuli and A. equuli subsp. haemolyticus distributed through both subclusters with no correlation to taxonomic classification. Within one of the rrs-based subclusters containing the A. equuli subsp. equuli type strain, clustered as well the porcine Actinobacillus suis strains. This latter is known to be also phenotypically closely related to A. equuli. The toxin gene analysis revealed that all A. equuli subsp. haemolyticus strains from both rrs subclusters specifically contained the aqx gene while the A. suis strains harboured the genes apxI and apxII. The aqx gene was found to be specific for A. equuli subsp. haemolyticus, since A. equuli subsp. equuli contained no aqx nor any of the other RTX genes tested. The specificity of aqx for the haemolytic equine A. equuli and ApxI and ApxII for the porcine A. suis indicates a role of these RTX toxins in host species predilection of the two closely related species of bacterial pathogens and allows PCR based diagnostic differentiation of the two.