Decreases in multi-locus heterozygosity in suspension-cultured mussels (Mytilus edulis) through loss of the more heterozygous individuals

The mean multi-locus heterozygosity (MLH) of suspension-cultured mussels has been reported to decrease within a few months after traditional sleeving in previous studies. Two experiments were carried out to determine if this decrease could be attributed to the more rapid migration of the more heterozygous mussels out of the mesh tubes after sleeving. Since these individuals occur in greater numbers at the periphery of the sleeves, they are more susceptible to fall-offs. In the first experiment, the mean MLH of the mussels emerging from the mesh tubes was significantly higher than the MLH of the spat used for sleeving two weeks before. In a second experiment with caged and free sleeves under field conditions, a significant decrease in MLH was observed, but only for the mussels from the free sleeves. This decrease occurred in late December, only one month after sleeving. It is hypothesized that the experimental cages limited turbulence and thus fall-offs during the weeks following sleeving. As a consequence, the slower moving homozygotes were able to catch up with the faster heterozygotes at the sleeve's periphery. In contrast, mussels in the free sleeves may have experienced more turbulent conditions leading to high fall-offs of the more heterozygous mussels at the sleeve's periphery during the crucial period following sleeving. These losses could impact mussel production since MLH explained 32% of the variation in individual dry tissue weight in this study. Furthermore, the total fresh weight of mussels with high MLH (5–7 heterozygous loci) was almost twice that of the mussels with low MLH (0–2 heterozygous loci) about one year after sleeving: 11.38 vs. 5.95 g. In addition, there were 3.7 times more commercial-sized mussels (>50 mm) with a high MLH than with a low MLH (80% vs. 21.5%). In contrast to traditional sleeving with plastic mesh tubes, a new method of mechanical sleeving provides continuous sleeves wrapped in cotton cloth. This biodegradable cloth helps retain the heterozygotes on the sleeves before it disintegrates.     

Urban Runoff Impacts on Particulate Metal Concentrations in River Seine

Metallic contents (Cd, Cu, Pb, Zn) of suspended solids (SS) were measured in two sites (Suresnes and Chatou) in the river Seine, downstream Paris, during three summer periods. These two sites, which are respectively located downstream and upstream two of the most important combined sewer overflows (CSO's) of the Parisian sewer system (Clichy and La Briche), allow us to assess these CSO immediate impacts. Samples were collected using sediment traps, weekly during dry weather and daily during the week following the major CSO's events. The heavy metal concentrations, relatively large but stable during summer periods, were shown to further increase downstream Paris after main rain discharges occurred. Metal concentrations measured within the Seine SS during rain events, allowed us to establish that the observable immediate impact of Clichy overflows is only 5% of what it could be. The general principle demonstrated through this work is that most SS originating from CSO's rapidly settle once they reach the river. These polluted particles greatly contribute to the SS chronic pollution downstream Paris during dry weather, through a slow resuspension mechanism of the deposited sediments.     

A phylogenetic microarray targeting 16S rRNA genes from the bacterial division Acidobacteria reveals a lineage-specific distribution in a soil clay fraction

We designed an oligonucleotide microarray using probe sequences based upon a phylogenetic analysis of 16S rRNA genes recovered from members of the bacterial division Acidobacteria. A total of 42,194 oligonucleotide probes targeting members of the Acidobacteria division at multiple phylogenetic levels were included on a high-density microarray. Positive control hybridizations revealed a linear relationship between hybridization signal and template concentration, and a substantial decrease in non-specific hybridization was achieved through the addition of 2.5 M betaine to the hybridization buffer. A mean hybridization signal value was calculated for each Acidobacteria lineage, with the resultant lineage-specific hybridization data revealing strong predictive value for the positive control hybridizations. The Acidobacteria phylochip was then used to evaluate Acidobacteria rRNA genes from a Wisconsin soil and within a soil clay fraction. The Acidobacteria hybridization profile revealed the predominance of Acidobacteria subdivisions four and six, and also suggested a decrease in the abundance of subdivision six relative to subdivision four in the soil clay fraction. The change in relative abundance of these subdivisions in a soil clay fraction was supported by data from quantitative PCR. These results support the utility of a phylogenetic microarray in revealing changes in microbial population-level distributions in a complex soil microbial assemblage.     

Selection criteria for potato tubers to minimize acrylamide formation during frying

A number of parameters linked to the selection of potato tubers were evaluated with regard to their potential to influence acrylamide formation in French fries. The formation of acrylamide, which is a potential human carcinogen, can be minimized for a big extent by the selection of an appropriate tuber. This study focused on the following selection criteria: variety as influenced by storage time and soil type, underwater weight, and tuber size. A total of 16 varieties were compared, concerning their potential for acrylamide formation. From that survey, certain varieties, such as Tebina and Quincy, could be appointed as unsuitable for frying. The differences in the potential of acrylamide formation between the varieties could mainly be explained by the reducing sugar content of the potato (R2 = 0.82, n = 96). The investigated type of soil and storage time at 8 degrees C appeared to have a minor influence on the acrylamide formation during frying. On the other hand, the tuber size of the potato did contribute in a significant manner to the acrylamide formation. Smaller tubers were more susceptible to acrylamide formation and should be avoided in the frying process. The last selection parameter, the underwater weight, appeared to be of minor importance in the acrylamide formation. On the basis of these simple selection criteria, it is possible to make a first screening of potatoes to reduce the acrylamide formation during frying.     

A method for developing a large-scale sediment yield index for European river basins

Background, aim, and scope  

Sediment fluxes within continental areas play a major role in biogeochemical cycles and are often the cause of soil surface degradation as well as water and ecosystem pollution. In a situation where a high proportion of the land surface is experiencing significant global land use and climate changes, it appears important to establish sediment budgets considering the major processes forcing sediment redistribution within drainage areas. In this context, the aim of this study is to test a methodology to estimate a sediment yield index at a large spatial resolution for European river basins.     

Raman-assisted crystallography reveals end-on peroxide intermediates in a nonheme iron enzyme

Iron-peroxide intermediates are central in the reaction cycle of many iron-containing biomolecules. We trapped iron(III)-(hydro)peroxo species in crystals of superoxide reductase (SOR), a nonheme mononuclear iron enzyme that scavenges superoxide radicals. X-ray diffraction data at 1.95 angstrom resolution and Raman spectra recorded in crystallo revealed iron-(hydro)peroxo intermediates with the (hydro)peroxo group bound end-on. The dynamic SOR active site promotes the formation of transient hydrogen bond networks, which presumably assist the cleavage of the iron-oxygen bond in order to release the reaction product, hydrogen peroxide.     

Morphologic and Agronomic Diversity of Wild Genetic Resources of Medicago sativa L. Collected in Spain

One hundred and three natural populations of Medicago L. were collected in Spain, mainly from roadsides, non-irrigated or grazed lands. This germplasm was evaluated at Montpellier (France) with control cultivars and Spanish landraces under completely random block design, replicated four times, and observed for 64 qualitative or quantitative characters. Differences between natural populations and cultivated controls are highly significant, but gene flow occurs between wild and cultivated compartment and hybrid populations were identified. On the basis of multivariable analysis, the accessions were grouped into four clusters depending on their proximity with the cultivated pool to facilitate their management and ex situ conservation. The relationship between environment of the site of collection and phenotypic characteristics of the natural populations was also discussed. Different policies of conservation of these genetic resources are suggested to avoid their disappearance even when they disappeared from the other regions of the western Mediterranean. Spanish wild pool of alfalfa, also called ‘Mielga’, appears of great interest for the breeding of alfalfa because it contains a large diversity of characteristics (prostrate habit, rhizomes) linked to tolerance to grazing or drought environment. With the need for more sustainable systems in agriculture, the erosion of natural habitats and the necessity for rehabilitation of degraded ecosystems, the importance of this wild pool is really inestimable.     

<Emphasis Type="Italic">Posidonia oceanica</Emphasis> meadow: a low nutrient high chlorophyll (LNHC) system?

Background  

In spite of very low nutrient concentrations in its vicinity – both column and pore waters-, the Posidonia oceanica of the Revellata Bay displays high biomass and productivity. We measured the nutrient fluxes from the sediment into the water enclosed among the leaf shoots ("canopy water") to determine if it is possible source of nutrients for P. oceanica leaves.     

Is the Yelkouan shearwater Puffinus yelkouan threatened by low adult survival probabilities?

Many seabird species are experiencing population declines, with key factors being high adult mortality caused by fishery by-catch and predation by introduced predators on nesting islands. In the Mediterranean, both of these pressures are intensive and widespread. We studied the adult survival of an endemic Mediterranean seabird, the Yelkouan shearwater (Puffinus yelkouan), between 1969–1994 and 2007–2010 in Malta and between 2004–2010 in France using mark–recapture methods. Mean annual survival probabilities for breeding adults were below 0.9 for all colonies and periods. Between 1969–1994, annual survival for adults of unknown breeding status was on average 0.74 (95% confidence interval: 0.69–0.80) in Malta, possibly as a result of various human disturbances (including illegal shooting), light pollution and fisheries by-catch. Over the period 2004–2010, we found strong support for variation in adult survival probabilities between breeders and non-breeders, and islands with and without introduced predators in France. Survival probabilities for non-breeders (0.95, 0.81–1.0) appeared to be higher than for breeders (0.82, 0.70–0.94), but were imprecise partly due to low recapture probabilities. In Malta, we found evidence for heterogeneity in survival probabilities between two unknown groups (probably breeders and non-breeders), and seasonal variation in survival probability. Birds were more likely to survive the period including the peak breeding season than an equally long period during which they roam widely at sea. Although annual adult survival probability was still low (0.85, 0.58–1.0), colony protection measures appear to have reduced mortality at nesting cliffs. A population model indicated that colonies in France and Malta would currently require continuous immigration of 5–12 pairs per year to maintain stable populations. Our estimates of adult survival probabilities over the past four decades are consistent with overall population declines. Threats to Yelkouan shearwaters require immediate management actions to avoid ongoing population declines in the western Mediterranean.     

From swimming to walking with a salamander robot driven by a spinal cord model

The transition from aquatic to terrestrial locomotion was a key development in vertebrate evolution. We present a spinal cord model and its implementation in an amphibious salamander robot that demonstrates how a primitive neural circuit for swimming can be extended by phylogenetically more recent limb oscillatory centers to explain the ability of salamanders to switch between swimming and walking. The model suggests neural mechanisms for modulation of velocity, direction, and type of gait that are relevant for all tetrapods. It predicts that limb oscillatory centers have lower intrinsic frequencies than body oscillatory centers, and we present biological data supporting this.