Predicting the age of fish using general and generalized linear models of biometric data: A case study of two estuarine finfish from New South Wales, Australia

Direct ageing of fish can be a laborious and expensive task when age estimates from a large population are required, and often involves a degree of subjectivity. This study examined the application of general and generalized linear models that predict the age of fish from a range of efficiently and objectively measured covariates. The data sampled were from yellowfin bream (Acanthopagrus australis (Sparidae) (Owen, 1853)) and sand whiting (Sillago ciliata (Sillaginidae) Cuvier, 1829) populations from New South Wales, Australia. The covariates evaluated in the models were fish length, otolith weight, sex and location (the estuary from which the fish were sampled). Akaike Information Criteria were used for model selection and residual plots of the final models revealed a satisfactory fit to the observations. The best fitting model for each species included all covariates. An additional investigation considered whether general and generalized linear models that predict age from two different categories of biometric information outperform age-length keys with respect to subsequent estimates of total mortality from catch-curve analysis. The two categories of biometric information differed in the ease and cost with which the information could be collected. The first category only included fish length and location as covariates, whilst the second category also included otolith weight and sex. It was found that traditional age-length keys outperformed the predictive models that estimated age from only fish length and location, because the results from the models were prone to significant bias. However, when otolith weight and sex were added as covariates to the predictive models, some of them, including a generalized linear model with a Poisson-distributed response variable, performed similarly to the age-length key. Given that otolith weight and the sex of fish are cheaper to quantify than age from a sectioned otolith in many situations, general or generalized linear models may represent a cheaper and faster method of estimating mortality compared to age-length keys. Such models can also easily incorporate the influence of spatial, temporal and demographic variation.     

Comparing mating designs to restore seed production of interspecific hybrids between Trifolium repens (white clover) and Trifolium uniflorum

Interspecific hybrids between Trifolium uniflorum and cultivated white clover (Trifolium repens) have highly useful characteristics for temperate pastoral systems derived from both parent species. However, the early hybrids (F₁ and BC₁) also have unacceptably poor seed production for commerce. This study analysed the basis for the poor seed production and investigated breeding strategies for overcoming the problem. The BC₁F₁ generation produced lower‐than‐expected numbers of heads per plant and seeds per floret. Backcrossing of selected hybrids to white clover corrected these deficiencies and created new variation. Seed numbers were also returned to near target levels by recurrent selection within the BC₁ generation. Thus, it was possible to retain a theoretical average of 25% of T. uniflorum genome and still achieve high seed production per plant. The BC₁F₂ and BC₂F₁ generations produced high seed numbers per plant, along with reasonable variation. Both of these second‐generation hybrid forms have high reproductive potential and should be the focus for the selection of the desired combinations of agronomic and seed production traits.     

Step-wise drops in modularity and the fragmentation of exploited marine metapopulations

Context

Many nearshore species are distributed in habitat patches connected only through larval dispersal. Genetic research has shown some spatial structure of such metapopulations and modeling studies have shed light onto possible patterns of connectivity and barriers. However, little is known about human impact on their spatial structure and patterns of connectivity.

Objectives

We examine the effects of fishing on the spatial and temporal dynamics of metapopulations of sedentary marine species (red sea urchin and red abalone) interconnected by larval dispersal.

Methods

We constructed a metapopulation model to simulate abalone and sea urchin metapopulations experiencing increasing levels of fishing mortality. We performed the modularity analysis on the yearly larval connectivity matrices produced by these simulations, and analyzed the changes of modularity and the formation of modules over time as indicators of spatial structure.

Results

The analysis revealed a strong modular spatial structure for abalone and a weak spatial signature for sea urchin. In abalone, under exploitation, modularity takes step-wise drops on the path to extinction, and modules breakdown into smaller fragments followed by module and later metapopulation collapse. In contrast, sea urchin showed high modularity variation, indicating high- and low-mixing years, but an abrupt collapse of the metapopulation under strong exploitation.

Conclusions

The results identify a disruption in larval connectivity and a pattern of collapse in highly modular nearshore metapopulations. These results highlight the ability of modularity to detect spatial structure in marine metapopulations, which varies among species, and to show early changes in the spatial structure of exploited metapopulations.

     

I,River?: New materialism,riparian non‐human agency and the scale of democratic reform

This article is a discussion of the “discourse on the unthinkable” surrounding potential future democratic engagements with rivers as non‐human persons or natural objects. In the context of the Asia–Pacific region, this article suggests that the developments in material philosophy entitled “new materialism” are essential tools in the reconceptualisation of rivers as democratic entities but that local socio‐historical conditions must also be taken into the account. In order to make its case, the article not only surveys the context for considering rivers as non‐human persons in a juridical context but also discusses the new material context that assists modern democracies in the renegotiation of the demos that forms the body politic of democracy – often in the face of neoliberal exploitation and a legacy of extremes in instrumentalism. The article argues that the incorporation of water in the democratic project of enfranchisement is an essential exercise born of many Western beliefs and ideals but articulated uniquely at a regional and national level.     

Phosphorus Retention and Release Characteristics of Sewage-Impacted Wetland Sediments

Sediment deposited in traps positioned along a sewage-impacted wetland receiving phosphorus (P)-retaining reactants from natural wetland water was fractionated into different particle sizes, and the amount of P retained in these particle sizes was investigated. Subsamples of the sediments collected from different sites along the wetland system were also equilibrated with water at different water:sediment ratios and equilibration periods to investigate the extent of P released from these sediments under aerobic and anaerobic conditions. Results obtained showed that most of P deposited in sediments is in fine fractions (<16 µm), particularly in sediments collected from confluence sites where water inflow from the natural wetland provides P-retaining reactants and from sites immediately below these confluence sites (postconfluence sites). The extent of P release from sediments depended on the aerobic-anaerobic conditions of the sediments, equilibration period, water:sediment ratio and the position of sites within the wetland. The rate of P released from sediments associated with an increase in equilibration period tended to be higher under aerobic than anaerobic conditions. Water:sediment ratio was found to be a more important factor in controlling the release of P from sediments under anaerobic than aerobic conditions. The amount of P released from the confluence and postconfluence sites was higher than that from other sites over a range of equilibration periods and water:sediment ratios under aerobic and anaerobic conditions.     

Strategies for reducing subsurface drainage in irrigated agriculture through improved irrigation

The traditional approach ofinstalling subsurface drainage systems tosolve shallow ground water problems is notfeasible along the west side of the SanJoaquin Valley of California because of thelack of drain water disposal methods thatare economical, technically feasible, andenvironmentally friendly. Thus, optionssuch as drainage reduction through improvedirrigation and drain water reuse are beingexamined as methods for coping with thesubsurface drainage problem. This paperdiscusses options for reducing subsurfacedrainage through improved irrigationpractices. Options are discussed forimproving irrigation system design such asupgrading existing irrigation methods andconverting to systems with higher potentialirrigation efficiencies. Methods forimproving water management are alsopresented. Case studies on upgradingexisting systems or converting to otherirrigation methods are presented along with study results of the effect of variouspolicies on reducing subsurface drainage.     

Crop management effects on soil carbon sequestration on selected farmers’ fields in northeastern Ohio

Soil organic carbon (SOC) pool is the largest among terrestrial pools. The restoration of SOC pool in arable lands represents a potential sink for atmospheric CO₂. Restorative management of SOC includes using organic manures, adopting legume-based crop rotations, and converting plow till to a conservation till system. A field study was conducted to analyze soil properties on two farms located in Geauga and Stark Counties in northeastern Ohio, USA. Soil bulk density decreased with increase in SOC pool for a wide range of management systems. In comparison with wooded control, agricultural fields had a lower SOC pool in the 0–30 cm depth. In Geauga County, the SOC pool decreased by 34% in alfalfa (Medicago sativa L.) grown in a complex rotation with manuring and 51% in unmanured continuous corn (Zea mays L.). In Stark County, the SOC pool decreased by 32% in a field systematically amended with poultry manure and 40% in the field receiving only chemical fertilizers. In comparison with continuous corn, the rate of SOC sequestration in Geauga County was 379 kg C ha⁻¹ year⁻¹ in no-till corn (2 years) previously in hay (12 years), 760 kg C ha⁻¹ year⁻¹ in a complex crop rotation receiving manure and chemical fertilizers, and 355 kg C ha⁻¹ year⁻¹ without manuring. The rate of SOC sequestration was 392 kg C ha⁻¹ year⁻¹ on manured field in Stark County.     

Characterization of glomalin as a hyphal wall component of arbuscular mycorrhizal fungi

Arbuscular mycorrhizal fungi (AMF) produce a protein, glomalin, quantified operationally in soils as glomalin-related soil protein (GRSP). GRSP concentrations in soil can range as high as several mg g⁻¹ soil, and GRSP is highly positively correlated with aggregate water stability. Given that AMF are obligate biotrophs (i.e. depending on host cells for their C supply), it is difficult to explain why apparently large amounts of glomalin would be produced and secreted actively into the soil, since the carbon could not be directly recaptured by the mycelium (and benefits to the AMF via increased soil structure would be diffuse and indirect). This apparent contradiction could be resolved by learning more about the pathway of delivery of glomalin into soil; namely, does this occur via secretion, or is glomalin tightly bound in the fungal walls and only released after hyphae are being degraded by the soil microbial community? In order to address this question, we grew the AMF Glomus intraradices in in vitro cultures and studied the release of glomalin from the mycelium and the accumulation of glomalin in the culture medium. Numerous protein-solubilizing treatments to release glomalin from the fungal mycelium were unsuccessful (including detergents, acid, base, solvents, and chaotropic agents), and the degree of harshness required to release the compound (autoclaving, enzymatic digestion) is consistent with the hypothesis that glomalin is tightly bound in hyphal and spore walls. Further, about 80% of glomalin (by weight) produced by the fungus was contained in hyphae and spores compared to that released into the culture medium, strongly suggesting that glomalin arrives mainly in soil via release from hyphae, and not primarily through secretion. These results point research on functions of glomalin and GRSP in a new direction, focusing on the contributions this protein makes to the living mycelium, rather than its role once it is released into the soil.