Dietary habits of grazers influence their suitability as biological controls of fouling macroalgae in ex situ mariculture

The dietary habits of the sea urchin Salmacis sphaeroides and the gastropod Trochus maculatus in ex situ mariculture were examined. Fouling algal assemblages on terracotta tiles were exposed to the grazers and compared. Except for Day 0, the assemblages on Days 2, 13 and 27 differed significantly across treatments. S. sphaeroides rapidly consumed most algae, leaving an assemblage dominated by turf algae and bare tile. T. maculatus primarily fed on green filamentous algae, resulting in an even distribution of other algal functional groups, while control tiles were dominated by green filamentous algae. Using three representative fouling algae species (Bryopsis corymbosa, Hypnea spinella and Lobophora variegata), the consumption rates of both grazers and dietary preferences of S. sphaeroides were examined through a single‐diet and a choice experiment respectively. The single‐diet experiment revealed differential algal consumption rates for S. sphaeroides (H. spinella = B. corymbosa > L. variegata) and T. maculatus (B. corymbosa > H. spinella = L. variegata). The choice experiment showed that S. sphaeroides preferred H. spinella over the other two species. These experiments highlighted the importance of understanding the dietary habits of grazers as this has direct implications on their effectiveness as biological controls of fouling macroalgae in mariculture.     

Performance of Pacific White Shrimp,Litopenaeus vannamei,Reared in Zero‐Exchange Tank Systems Exposed to Different Light Sources and Intensities

The development of biofloc production technology has generated significant commercial and research interest directed toward the inland culture of Pacific white shrimp, Litopenaeus vannamei. Most work to date has been conducted in greenhouses, where photoautotrophic organisms are significant contributors to system functionality. In more temperate locations, operations in insulated buildings would reduce heating costs. This experiment was designed to evaluate the effect of light on shrimp cultured in intensive biofloc systems. A 92‐d experiment was conducted in 3.8‐m³ tanks. There were five light treatments: (1) natural sunlight (SUN) as a control (midday: 718 lx); (2) one metal halide light (MHL) (1074 lx); (3) one fluorescent light (1FL) (214 lx); (4) two fluorescent lights (2FL) (428 lx); and (5) three fluorescent lights (3FL) (642 lx). Artificial light treatments operated on a 12:12 daily cycle. There were three replicate tanks per treatment and each was separated by black plastic to prevent light transmission between replicates. Each tank was stocked at 465 shrimp/m² of tank bottom (initial mean weight = 0.4 g). Light treatment had a significant (P≤ 0.05) impact on average individual weight, survival, harvest yield (kg/m²), and feed conversion ratio (FCR). Harvest yield and survival among shrimp in the SUN, MHL, and 1FL treatments were not significantly different. However, there was an inverse linear relationship (P≤ 0.05; R² = 0.76) between the number of fluorescent fixtures and survival, which was related to greater concentrations of filamentous bacteria as the intensity of fluorescent light increased, causing gill fouling. Natural light and MHL did not result in high concentrations of filamentous bacteria. These results indicate that natural light, metal halide lighting, and/or relatively low levels of fluorescent lighting are suitable for indoor production of Pacific white shrimp in biofloc systems. Light spectrum and intensity can affect bacterial community structure, which has a profound effect on shrimp survival and production.     

Effect of ammonia on the growth rate and oxygen consumption of juvenile greenlip abalone, Haliotis laevigata Donovan

Juvenile greenlip abalone, Haliotis laevigata, (mean whole weight 4.48±1.9 g, mean±s.d., n=953) were highly sensitive to ammonia as indicated by depressed growth rate and food consumption measured over 2–3 months in bioassay tanks. For growth rate expressed on a whole weight basis, the EC₅ and EC₅₀ values (5 and 50% growth reductions) were 0.041 mg FAN l⁻¹ (Free Ammonia–Nitrogen) and 0.158 mg FAN l⁻¹, respectively. Shell growth rates declined over the entire experimental range (0.006–0.188 mg FAN l⁻¹). At the end of the bioassay, groups of abalone were transferred to respiratory chambers. Oxygen consumption rate increased to a maximum of 188% of control values at 0.235 mg FAN l⁻¹ and decreased slightly at the highest concentration of 0.418 mg FAN l⁻¹.     

Effects of salinity on the growth and lipid composition of Atlantic salmon (Salmo salar) and turbot (Scophthalmus maximus) cells in culture

The direct effects of osmotic pressure (salinity) on growth performance and lipid composition were investigated in fish cells in culture. Cell lines from a relatively stenohaline marine species, turbot (Scophthalmus maximus) (TF) and an anadromous species, Atlantic salmon (AS) were cultured in media supplemented with NaCl to produce osmotic pressures varying from 300 to 500 mOsm kg⁻¹. The growth rates of the two cell lines were affected in a similar manner by the salinity of the media with the rank order for both peak cell numbers and growth rates up to the day of peak cell number being 300 > 350 > 400 > 450 > 500 mOsm kg⁻¹. Cell death occurred in both cell lines in older cultures at all salinities with the greatest loss of viable cells in media of 300 and 350 kg⁻¹. However, there were quantitative and qualitative differences between the cell lines in their lipid metabolism in response to the salinity of the media. The lipid content expressed per cell showed a positive correlation between lipid per cell and salinity in TF cells, but this was less apparent in AS cells. The percentage of total polar lipid classes increased with increasing salinity in TF cells due mainly to graded increases in the percentages of choline phospholipids. In contrast, there were no significant differences in the proportions of polar and neutral lipid classes with salinity in AS cells. The only significant effect of salinity in AS cells was a decreased proportion of dimethylacetals in total lipid at the highest salinity. The same significant effect of salinity on dimethylacetal content of total lipid was observed in TF cells. However, in addition there was a graded decrease in the percentage of 18:2n-9 in TF cell total lipid with increasing salinity. This was accompanied by increased percentages of total n-3 and n-6 PUFA with higher proportions of both groups of PUFA at 450 and 500 compared with 300 mOsm kg⁻¹. The results show that environmental salinity, in the absence of hormonal or other physiological stimuli, has direct effects on the growth and lipid metabolism of fish cells and that these effects differ in cells from different fish species.     

Can giant clam (Tridacna squamosa) populations be restored on Singapore's heavily impacted coral reefs?

• 1. Giant clams have been a sustainable resource for millennia, but unregulated harvesting has led to local extinctions within the Indo‐Pacific region. Giant clam mariculture can produce large numbers of juveniles for restocking wild populations where natural recruitment is low or absent.
• 2. Singapore is surrounded by more than 60 small islands, many with fringing reefs. These reefs, however, experience increased turbidity and sedimentation resulting from massive coastal development projects and regular dredging of shipping lanes.
• 3. Seven reefs off Singapore's southern islands were surveyed (9670 m²) for giant clams. Also, an experiment was conducted to determine the growth of Tridacna squamosa reared in aquaria under three light treatments: ～50% ambient photosynthetically active radiation (PAR); ～25% ambient PAR; and ～12% ambient PAR. Finally, 144 clams (T. squamosa) were transplanted to four reefs around Singapore to study survival and growth in a heavily impacted environment.
• 4. A total of 23 adult clams from three species were found during the survey, representing a mean density of 0.24 per 100 m². Most clams were found at Raffles Lighthouse, Singapore's ‘best’ reef. No juvenile clams were encountered. In the aquarium experiment, clam growth was significantly different among the three light treatments, with growth greatest in the ～50% ambient PAR treatment. Of the 144 transplanted clams, 116 (80.6%) were recovered after 7 months. All specimens had increased in size, with growth rates among reefs ranging from 3.3 mm month^?1 (SD=1.3 mm) to 4.8 mm month^?1 (SD=1.6 mm).
• 5. Results suggest that, despite high levels of sedimentation and turbidity on Singapore's reefs, giant clams can survive and grow well. Restocking efforts using maricultured clams may be effective in enhancing the dwindling local populations. It is not clear, however, whether a self‐sustaining community can be established as high sedimentation may hinder larval settlement and survival.

Copyright © 2007 John Wiley & Sons, Ltd.     

Towards an integrated understanding of green space in the European built environment

In recent years social, economic and environmental considerations have led to a reevaluation of the factors that contribute to sustainable urban environments. Increasingly, urban green space is seen as an integral part of cities providing a range of services to both the people and the wildlife living in urban areas. With this recognition and resulting from the simultaneous provision of different services, there is a real need to identify a research framework in which to develop multidisciplinary and interdisciplinary research on urban green space. In order to address these needs, an iterative process based on the delphi technique was developed, which comprised email-mediated discussions and a two-day symposium involving experts from various disciplines. The two outputs of this iterative process were (i) an integrated framework for multidisciplinary and interdisciplinary research and (ii) a catalogue of key research questions in urban green space research. The integrated framework presented here includes relevant research areas (i.e. ecosystem services, drivers of change, pressures on urban green space, human processes and goals of provision of urban green space) and emergent research themes in urban green space studies (i.e. physicality, experience, valuation, management and governance). Collectively these two outputs have the potential to establish an international research agenda for urban green space, which can contribute to the better understanding of people's relationship with cities.     

The DAWGPAWS pipeline for the annotation of genes and transposable elements in plant genomes

Background  

High quality annotation of the genes and transposable elements in complex genomes requires a human-curated integration of multiple sources of computational evidence. These evidences include results from a diversity of ab initio prediction programs as well as homology-based searches. Most of these programs operate on a single contiguous sequence at a time, and the results are generated in a diverse array of readable formats that must be translated to a standardized file format. These translated results must then be concatenated into a single source, and then presented in an integrated form for human curation.     

Image processing-based study of soil porosity and its effect on water movement through Andosol intact columns

The soil pore network and marcoporosity are important factors affecting water and solute transport. The transfer of contaminants to water resources is of particular importance in the Valle de Bravo watershed as it provides 10% of the drinking water for the 20 million inhabitants of Mexico City. This watershed is composed mainly of Andosols with unique mineralogical and physical characteristics. Soil porosity is usually examined on thin sections, using various image analysis techniques. We propose a novel methodology combining image analysis and a displacement experiment to study relationships between soil structure and water tracer transport parameters. H₂¹⁸O displacement experiments were conducted through intact soil columns sampled at three depths from a representative cultivated Andosol profile. The soil structure and pore characteristics were obtained by image analysis on thin sections obtained from each column at the end of the displacement experiment. The total 2D porosity (for pores larger than 50 μm) varied from 80% of the total section area in the topsoil to around 60% in the subsoil. Tubular pores were the most abundant in the soil profile, but ploughing of the topsoil had destroyed sections of these pores and replaced them with packing pores. Water transport in the intact subsoil columns was always in physical non-equilibrium, showing the existence of preferential flow pathways. In the topsoil, one column out of three showed no preferential flow, demonstrating that soil ploughing also homogenised pore connections. Pore connectivity was larger in the ploughed topsoil than in their deeper soil horizon counterparts. Our methodology offers a 2D quantitative characterisation of the macroporous network at 50 μm resolution and the determination of water transport parameters on the same intact soil samples. 3D characterisation of soil porosity using X-ray computed tomography (CT) gives a better picture of pore connection but usually has lower spatial resolution and a larger cost.