A human Y-linked DNA polymorphism and its potential for estimating genetic and evolutionary distance

A human DNA sequence (p12f2), derived from a partial Y-chromosome genomic library and showing homology with the X and Y chromosomes and with an undetermined number of autosomes, detected two Y-specific restriction fragment length variants on male DNA that had been digested with Taq I and Eco RI. These variants may have been generated through a deletion-insertion mechanism and their pattern of holoandric transmission indicates that they represent a two-allele Y-linked polymorphism (RFLP). By means of DNA from patients with inborn deletions in chromosome Y, this polymorphic DNA site was mapped to the interval Yq11.1-Yq11.22. The frequency of the rarest allele was about 35 percent in Algerian and Sardinian human males, whereas it was only 4 percent among Northern Europeans. The p12f2 probe also detected Y-specific DNA fragments in the gorilla and chimpanzee. In view of the monosomy of the Y chromosome in mammalian species, Y-linked RFLP's may prove to be more useful than autosomal or X-linked markers in estimating genetic distances within and between species.     

An alternative rotational stocking management designed to favour butterflies in permanent grasslands

Grassland butterflies are on the decline throughout Europe. We tested an ‘alternative rotational stocking’ (ARS) strategy based on theoretical and practical aspects of grassland ecology, designed to increase butterfly diversity while also meeting farmers’ production objectives. This management strategy implies taking animals away from one subplot of the rotation during the main flowering period. Its feasibility and benefits on butterfly diversity were tested by comparing ARS with continuous stocking (CS) in plots grazed by cattle at the same stocking rate: high in 2005 and 2006 then lenient in 2007 and 2008. At the high stocking rate, butterfly abundance (21·9 vs. 8·3, P < 0·01) and butterfly species richness (7·4 vs. 3·7, P < 0·001) were significantly higher in ARS than in CS plots, matching the increase in pasture flowering intensity and sward structural diversity. ARS was led according to the pre‐planned schedule in 2005, but in 2006, the number of heifer grazing days in ARS was reduced by 19% because of unfavourable spring grass growth. At the lenient stocking rate, ARS was less beneficial for butterflies (abundance: 17·4 vs. 13·0, P < 0·10; species richness: 5·9 vs. 5·2, P = 0·35) but would present less risk for farmers in terms of providing livestock with sufficient forage. Alternative rotational stocking thus has potential to be integrated into grassland‐based systems, but would require earlier grazing on the excluded subplot of the rotation in the event of unfavourable grass growth during spring.     

Specific Diagnosis of Two Root-Knot Nematodes, Meloidogyne chitwoodi and M. fallax, with Satellite DNA Probes

ABSTRACT Meloidogyne chitwoodi and M. fallax are serious pests of potato, and both species have been recently designated as quarantine organisms in the European Community and in Canada. The sympatric and less damaging species M. hapla is often found associated with both of them under temperate climates. Here, we describe the use of satellite DNA (satDNA) sequences previously isolated from these three root-knot nematode species for the development of specific diagnostic procedures. In dot-blot experiments, it was unambiguously possible to separate M. chitwoodi and M. fallax from M. hapla using satDNA monomers as probes. In squash-blot experiments, satDNAs allowed discrimination between single individuals of M. chitwoodi or M. fallax from M. hapla, even within root tissues, without the need for DNA purification. The same results were obtained with radioactive or digoxigenin-labeled probes with no loss of sensitivity in detection. M. fallax and M. chitwoodi could not be distinguished. From this study, it is concluded that such cloned satDNA sequences may constitute a powerful tool for the identification and management of Meloidogyne spp. populations in the field and for the implementation of quarantine regulations against these pests.     

Effects of non-genetic and crossbreeding factors on daily milk yield of Ayrshire × (Sahiwal × Ankole) cows in Mahwa station (Burundi)

The study was carried out at the Mahwa station located in Bututsi natural region in South of Burundi at 1850 m of altitude. The objective of the study was to assess the effects of days in milk, cow's calving age, type of crossbreeding, year and month of lactation, parity on daily milk yield of crossbreds Ayrshire (AY) × Sahiwal (S) × Ankole (A) cows. Milk yields were obtained from 9 cows (S) that have been both milked and suckled during the entire lactation, on 8 cows (M) only milked during the entire lactation and on 150 cows (SM) suckled before and milked after weaning. Data were analyzed using the procedure GLM in SAS for S,M, and SM cows separately. All factors affected significantly daily milk yields (P < 0.001). Least-squares means (LSM) for daily milk yields were highest at the 8th (7.16 ± 0.07 l), 8th (7.63 ± 0.35 l), and 7th (7.34 ± 0.39 l) day in milk for SM, S and M lactations, respectively. The Wood model was able to detect 2 main groups of curve shape: standard for SM and S cows and atypical decreasing for M cows. An important decrease in milk production was observed around the 120th day in SM cows corresponding to the weaning period. Crossbreeding improved milk production and highest yields were observed with 50% to 75% of Ayrshire inheritance (LSM = 5 ± 0.05 to 5.51 ± 0.02 l/day). A significant increase was observed from 1977 to 1992 due to the improvement of genetic and management techniques. During this period, LSM raised from 1.26 ± 0.11 l to 4.74 ± 0.03 l per day for SM cows. Unfortunately, the 1993 civilian war destabilized the managerial techniques and consequently, the milk production decreased in Mahwa station. In all cows, milk production was significantly higher from December to May (LSM = 3.96 ± 0.03 l/day) during the rainy season than in September (LSM = 3.12 ± 0.03 l/day) at the end of the dry season.     

Indigenous Muscovy Ducks in Congo Brazzaville. 2. Preliminary observations on indigenous Muscovy ducks reared under moderate inputs in Congolese conditions

To evaluate the potential of the native Muscovy ducks in Congo, a trial was conducted with closed housing, commercial feeding and veterinary care. The characterization included reproductive performance, daily weight gain, live body weight, feed conversion ratio, body live weight productivity, and meat productivity. The experimental genetic stock was bred under natural mating and natural incubation. The number of eggs recorded per female and per clutch was 14.6 ± 3 eggs with 2 clutches per year. The average (±SD) hatchability was 75% ± 3% and the average egg weight was 72 ± 8 g. The sexual dimorphism for body weight appeared after 3 weeks (p < 0.05). The maximum daily weight gain in males reached 55 ± 8 g/day and occurred at 5 weeks, whereas in females it occurred at 4 weeks and reached 35 ± 5 g/day. The carcass yield was 70% ± 5% and 51 ± 8% in males and females, respectively. The meat productivity was 26.7 and 11.5 kg/m² per year in males and females, respectively. From these findings, it can be concluded that the incubation by mother duck is preferred in the small farming duck and that males should be raised for meat and females for egg production. Further studies including local poultry-related issues are needed to optimize the performance of the native Muscovy duck in Congo Brazzaville.     

Chromosome Based Strategies to Decipher the Structure and Evolution of the Hexaploid Wheat Genome： Chromosome 3B, a Case Study

With 17% of all crop area, wheat is the staple food for 40% of the world＇s population. Improvement in bread wheat quality and yield in the context of sustainable agriculture is needed in the next decades to meet human needs by 2050. To accelerate gene discovery, marker assisted selection and the exploitation of genetic diversity in wheat, significant advances must be achieved in the understanding of the structure, function and evolution of the wheat genome.     

Normal Canine Prostate Gland: Repeatability,Reproducibility, Observer‐Dependent Variability of Ultrasonographic Measurements of the Prostate in Healthy Intact Beagles

Most prostatic diseases in dogs are associated with prostatomegaly, and transabdominal ultrasonography has become the imaging modality of choice for evaluation of the prostate gland in the dog. The aim of the present study was to assess the reproducibility, the repeatability and interobserver variations of sonographic measurements of prostate and to determine which measurement had the lowest variability. Length and height of prostate gland were measured on longitudinal views, width of the prostate gland and height of left and right lobes of the gland on transversal views. The within‐day and between‐day variabilities of the prostatic parameters were determined by performing 1350 (270 length, 270 height, 270 width, 270 height of right lobe and 270 height of left lobe) examinations on ten healthy intact beagle dogs on six different days, in a two‐week period (three days for the five dogs, three different days for the five others). Three observers with different levels of experience in ultrasonography performed the examinations. The lowest within‐day and between‐day standard deviation and coefficient of variation values were observed for the width of the prostate. The width of the gland measured on transverse frozen images seems to be the most reliable measurement for evaluating size of prostate glands in healthy dogs, although the shape, position, outline, and echogenicity of the prostate should also be assessed.     

Increasing incidence of megabacteriosis in canaries (Serinus canarius domesticus)

A total of 312 post-mortem examinations of 178 canaries (Serinus canarius domesticus), 40 parakeets (Melopsittacus undulatus, Nymphicus hollandicus) and 94 parrots (Amazona aestiva, Psitaccus erithacus) were conducted at the Birds and Rabbits Service of the University of Liège, Belgium. After a detailed gross examination, tissue samples were collected for virological and/or bacteriological and/or parasitological examination to complete the diagnosis. In all cases, a microscopic examination of the proventricular mucus layer was undertaken for the detection of the anamorphic ascomycetous yeast Macrorhabdus ornithogaster, which causes the non-zoonotic but important disease in cage birds known as megabacteriosis. At the time of death, megabacteriosis was diagnosed respectively in 28% of canaries and 22.5% of budgerigars (P value for Fisher's exact test=0.5576), but was not diagnosed in parrots (P value for Fisher's exact test <0.0001). The incidence of megabacteriosis significantly increases along the years (P value for chi2 test <0.0001, Cramer's coefficient=0.3405). The most common gross lesions seen at necropsy of the 59 megabacteriosis cases was proventricular dilatation (86.1%). All the birds diagnosed as typical megabacteriosis cases were free of Salmonella spp. infections and of any parasitic infections. Four megabacteriosis cases (three canaries, one parakeet) were not included in statistical analysis as salmonellosis, pseudotuberculosis, coccidiosis and chlamydophilosis were diagnosed concomitantly in these birds. With the exception of megabacteriosis, the most frequent causes of death were protozoan (coccidiosis, lankesterellosis) infections (18.4%) and salmonellosis (17.1%) in canaries, and psittacosis (31.5%) and viral hepatitis (26.3%) in parakeets. In parrots, the most common causes of death were psittacosis (28.6%) and aspergillosis (28.5%).     

Quantitative trait locus analysis of wheat quality traits

Milling and baking quality traits in wheat (Triticum aestivum L.) were studied by QTL analysis in the ITMI population, a set of 114 recombinant inbred lines (RILs) generated from a synthetic-hexaploid (W7985) × bread-wheat (Opata 85) cross. Grain from RILs grown in U.S., French, and Mexican wheat-growing regions was assayed for kernel-texture traits, protein concentration and quality, and dough strength and mixing traits. Only kernel-texture traits showed similar genetic control in all environments, with Opata ha alleles at the hardness locus Ha on chromosome arm 5DS increasing grain hardness, alkaline water retention capacity, and flour yield. Dough strength was most strongly influenced by Opata alleles at 5DS loci near or identical to Ha. Grain protein concentration was associated not with high-molecular-weight glutenin loci but most consistently with the Gli-D2 gliadin locus on chromosome arm 6DS. In Mexican-grown material, a 2DS locus near photoperiod-sensitivity gene Ppd1 accounted for 25% of variation in protein, with the ppd1-coupled allele associated with higher (1.1%) protein concentration. Mixogram traits showed most influence from chromosomal regions containing gliadin or low-molecular-weight glutenin loci on chromosome arms 1AS, 1BS, and 6DS, with the synthetic hexaploid contributing favorable alleles.Some RI lines showed quality values consistently superior to those of the parental material, suggesting the potential of further evaluating new combinations of alleles from diploid and tetraploid relatives, especially alleles of known storage proteins, for improvement of quality traits in wheat cultivars.Contribution number 06-77J from the Kansas Agricultural Experimental Station.