Characterization and distribution of mating type genes in the dothistroma needle blight pathogens

ABSTRACT Dothistroma septosporum and D. pini are the two causal agents of Dothistroma needle blight of Pinus spp. in natural forests and plantations. Degenerate primers amplified portions of mating type genes (MAT1-1-1 and MAT1-2) and chromosome walking was applied to obtain the full-length genes in both species. The mating-type-specific primers designed in this study could distinguish between the morphologically similar D. pini and D. septosporum and between the different mating types of these species. Screening of isolates from global collections of D. septosporum showed that only MAT2 isolates are present in Australian and New Zealand collections, where only the asexual form of the fungus has been found. In contrast, both mating types of D. septosporum were present in collections from Canada and Europe, where the sexual state is known. Intriguingly, collections from South Africa and the United Kingdom, where the sexual state of the fungus is unknown, included both mating types. In D. pini, for which no teleomorph is known, both mating types were present in collections from the United States. These results provided new insights into the biology and global distribution of two of the world's most important pine pathogens and should facilitate management of the diseases caused by these fungi.     

Glorious past, uncertain present, bad future? Assessing effects of land-use changes on habitat suitability for a threatened farmland bird species

Land-use changes have strong impacts on biological communities. Among them, land abandonment is threatening a large number of conservation-concern species associated with semi-natural habitats shaped by ‘traditional’ farming. We focused on the red-backed shrike as a model for investigating the effect of land abandonment on a threatened bird species, and used historical data to model dynamic scenarios. We explored variations in habitat suitability from the 1950s to the present and predicted possible future variations. After investigating local habitat preferences of the species, we formulated a spatially explicit model of habitat suitability for shrikes according to current land-use types; then, we evaluated past habitat suitability, by applying the model to three known past scenarios, and simulated the habitat changes after land abandonment. By combining a habitat-association approach with past and future land use scenarios, we assessed and predicted the effects of habitat changes caused by abandonment. Shrike occurrence was favoured by the cover of four types of grassland and of shrubland with trees, and negatively affected by broadleaved woodlands. The current average habitat suitability is less than half of what it was in the 1950s. Future predictions in a complete abandonment scenario suggest that important decrease could be expected 10 or 20 years after abandonment, and that after 30 years the red-backed shrike would be completely extinct. Alternative scenarios involving partial abandonment suggested that subsidy policies may mitigate the effects of abandonment. Knowing land-use dynamics allowed the exploration of effects of land-use changes and corroborated the importance of low-intensity farming for conservation.     

Changes in the inorganic element concentration spectrum of mesquite foliage during operational and non-operational periods of a copper smelter

Leaves of honey mesquite (Prosopis julifora) were collected along distance and elevation gradients from an Arizona copper smelter during a year of smelter operations and during a year of a smelter shut-down. An inorganic leaf element concentration spectrum for elements Zn, Cu, Fe, Ti, Mn, Al, Mg, Cs, Sm, U, Yb, As, La, Hf, Sb, Sc, V. In, W, Ba, Br, K, Na and Cl was derived for both sampling periods. Sources of element origin were identified through factor analysis and correlation matrices. Elements Cu, As, Sb, W and In, which are emitted in significant quantities during the smelting process and are good smelter pollution trace elements, were reduce up to 95% in mesquite leaves collected after the smelter shut-down. Leaves grown in the smelter vicinity during smelter operations showed visible leaflet deformation while no leaf damage was observed on the same trees during the non-operational period. The seasonal change in mesquite leaf element concentrations could be directly related to the seasonal change in atmospheric smelter pollution.     

Coffee drinking influences plasma antioxidant capacity in humans

Coffee and tea are widely consumed beverages, but only tea has been studied for its antioxidant capacity (AC) in vivo. The aim of this study was to compare the capacities of coffee and tea to affect plasma redox homeostasis in humans. The AC of plasma before and after supplementation with 200 mL of beverages (0, 1, and 2 h) was measured by the TRAP and crocin tests. The crocin test detected an increase in plasma AC only in subjects supplemented with coffee (+7% at peak time), whereas the TRAP method showed an increase in plasma AC after consumption of both coffee and tea (+6 and +4%, respectively, at peak time). Both beverages induced a significant increase in plasma uric acid (+5 and +7%, respectively). Uric acid strongly affects the results obtained by the TRAP test and does not affect those obtained by the crocin test. We can thus argue that uric acid is the main component responsible for the plasma AC increase after tea drinking, whereas molecules other than uric acid (probably phenolic compounds) are likely to be responsible for the increase in plasma AC after coffee drinking.     

Probing protein-tannin interactions by isothermal titration microcalorimetry

Isothermal titration microcalorimetry (ITC) has been applied to investigate protein-tannin interactions. Two hydrolyzable tannins were studied, namely myrabolan and tara tannins, for their interaction with bovine serum albumin (BSA), a model globular protein, and gelatin, a model proline-rich random coil protein. Calorimetry data indicate that protein-tannin interaction mechanisms are dependent upon the nature of the protein involved. Tannins apparently interact nonspecifically with the globular BSA, leading to binding saturation at estimated tannin/BSA molar ratios of 48:1 for tara- and 178:1 for myrabolan tannins. Tannins bind to the random coil protein gelatin by a two-stage mechanism. The energetics of the first stage show evidence for cooperative binding of tannins to the protein, while the second stage indicates gradual saturation of binding sites as observed for interaction with BSA. The structure and flexibility of the tannins themselves alters the stoichiometry of the interaction, but does not appear to have any significant affect on the overall binding mechanism observed. This study demonstrates the potential of ITC for providing an insight into the nature of protein-tannin interactions.     

Degradation of isoproturon by the white rot fungus Phanerochaete chrysosporium

The ability of the white rot fungus Phanerochaete chrysosporium to degrade isoproturon was tested in solid substrate fermentation (SSF) cultures using straw as substrate/carrier material. The role of the lignin degrading enzymes, lignin peroxidase (LiP) and manganese peroxidase (MnP), in the degradation of the herbicide was also studied. Isoproturon concentration and LiP and MnP activities were followed in sterile straw cultures of the fungus. In vitro degradation tests with pure LiP and MnP were performed. P. chrysosporium in straw cultures was able to degrade 91% of the herbicide isoproturon in 14 days of incubation. A sharp decrease of isoproturon coincided with the largest MnP activity. Although LiP activity was also present, its role in SSF is unclear. The in vitro tests showed a strong isoproturon oxidation by LiP and a slower oxidation by MnP in the presence of Tween 80 probably by a lipid peroxidation process. Two N-demethylated metabolites were identified in pure enzyme tests and in SSF cultures. Several unidentified isoproturon derivatives, most likely hydroxylated, were also formed in both systems. The different pattern of derivatives detected in pure LiP and MnP tests showed a completely different metabolism by these two enzymes.     

Evaluation of contaminated groundwater cleanup objectives

Uranium tailings are generated as solid and liquid wastes in uranium mining/milling operations. Since most of the uranium deposits in the world have low grades, millions of tonnes of such wastes are produced annually. Often, the uranium tailings are locally disposed of, using sites with suitable conditions to construct tailings basins. The main concern during the operation of a disposal site is the presence of radium in the liquid phase which overflows from dewatered tailings. This barium is precipitated by adding proper chemical reagent. The potential environmental hazards of uranium tailings arise when the disposal site is abandoned after the decommissioning of the uranium mill. Huge amounts of solid waste as small particles of depleted ore remain in place. Top soils are usually for soil stabilization and for controlling radon emissions. Hence water infiltration through uranium tailings presents a potential hazard to underground aquifers. Water plays a dual role by triggering a sequence of reactions and by carrying contaminants away from the wastes sites. The situation is more serious in a country like Canada, where the precipitation rate is higher than the evaporation rate and the water table is about one metre beneath the ground surface. For permanent disposal of uranium tailings, either the hazardous constituents of these wastes have to be isolated from the percolating water, or the subsoils must have acceptable sealing and sorptive characteristics. The first approach is effected by blending proper solidifying reagents with the tailings in order to totally block them from the leaching effects of aggressive pore water. Solid waste treatment may prove costly in additive usage and the blending operation. The leaching of toxic constituents, however, becomes effective so long as the tailings are in a loose form. This is because of the acid-generating properties of the pyrite, a substantial constituent (up to 8% wt) of the tailings. Two types of contaminants tend to leave the solid and migrate to the pore water. These are the heavy metals and the radioactive elements, both of which are hazardous for their toxicity and persistence. The sorptive and neutralizing capacities of the underlying soils have to be carefully examined and measures have to be taken to stop the progression of acidic interstitial water. This paper focuses on three aspects of crucial importance to the permanent disposal of uranium tailings. These are: leaching in uranium tailings, sorption on natural geological barriers, and radium immobilization.     

The introduction of Hymenoscyphus fraxineus to Northern Ireland and the subsequent development of ash dieback

Ash dieback caused by Hymenoscyphus fraxineus was first recorded in Northern Ireland (NI) in November 2012. The disease was observed only on recently (<6 years) planted trees. An in-depth case study in 2015 of an ash plantation with severe symptoms indicated that many of the trees were infected at the time of planting. Apothecia were observed developing from pseudosclerotia beneath the epidermis of dead branches still attached to the tree, suggesting a possible mechanism whereby H. fraxineus could be disseminated without leaf or rachises infection. Apothecia also formed on roots, indicating that infections may also occur in the soil. Often young trees were killed by the formation of large basal lesions which did not arise from stem infections higher up. On first detecting the disease on the island of Ireland the Governments of NI and the Republic of Ireland published an “All-Ireland Chalara Control Strategy.” Part of that strategy was a ban on the importation of ash plants from regions where the disease was known to be present, to prevent the introduction of further inoculum, and the implementation of an ‘eradication and containment’ policy with the aim of preventing the establishment and spread of the disease. While these measures may have slowed disease establishment, they were ultimately unsuccessful and by 2018 ash dieback was widespread and established throughout the whole of NI in plantations and in the wider environment.