A novel mechanism of somatic rearrangement predicted by a human T-cell antigen receptor beta-chain complementary DNA

The T-cell antigen receptor is a cell surface molecule vital in mediating the cellular immune response. The arrangement and rearrangement of the gene segments encoding the beta-chain polypeptide of the receptor are similar to those of immunoglobulin gene segments. The two constant region genes of the human T-cell antigen receptor are 8 kilobases apart with a cluster of joining segments located 5' of each constant region gene. Although most beta-chain gene rearrangements involve the variable, diversity, and joining segments, analysis of a beta-chain complementary DNA clone suggests the occasional occurrence of another type of rearrangement.     

Interpreting realized pollen flow in terms of pollinator travel paths and land-use resistance in heterogeneous landscapes

Widespread ecosystem change has led to declines in species world-wide. The loss of pollinators in particular constitutes a problem for ecosystem function and crop production. Understanding how landscape change affects pollinator movement, effective pollen flow, and plant and pollinator survival is therefore a global priority. In this study we investigated patterns of effective pollen flow, using wild cherry tree (Prunus avium) progeny arrays, to address two questions in three case studies: Do land-use types present different resistances to pollinator movement? Which pollinator travel path best explains the pollination data (straight lines, weighted straight lines, least cost paths or pair-wise resistance)? Trees and progeny arrays were genotyped and effective pollen flow and pollinator movement were estimated using the spatially explicit mating model. We found that pollinators did modify their travel paths in response to land-use type and arrangement, but the travel path that best described pollinator movement and the resistance rank of the land uses depended on the type and size of land-use patches and the landscape context. We propose a novel theoretical framework rooted in behavioural ecology, the resource model, for interpreting pollinator behaviour in heterogeneous landscapes. We conclude by discussing the importance and practicality of conservation and management strategies in which native and non-native land-use types together provide functional habitat and support ecosystem services across economic landscapes.     

Nutrient dependence of energy conservation requirements in rats. 4. The influence of protein levels of food on energy conservation requirements of rats during growth and after conclusion of the intensive growth phase

Albino rats bred in the institute (Wistar line) divided into 3 groups of 9 animals each received, beginning at the age of 4 weeks, feed mixtures with 10, 40 and 70% protein in the rations over a period of 24 weeks divided into 14 subperiods of study. The feed mixture changed cyclically for the groups of animals after each sub-period. Every period was divided into a growth period (8 days) with the rats kept in metabolism cages and a period of feeding on maintenance level (4 days) with the rats kept in respiration chambers. In both periods the temperature was kept constant at 30 degrees C. On 3 days of feeding on the maintenance level the metabolism parameters of energy, C and N metabolism were measured and energy maintenance requirement was ascertained. Both the energy maintenance requirement of the growing rats (up to 200 g live weight) and that of the nearly fully grown and fully grown rats resp. (greater than 200 g live weight) significantly depended on the nutrient composition of the feed mixtures supplied. It increased with the increasing protein and simultaneously decreasing carbohydrate quotas in the feed. On an average of the studies the rats had, in the sequence of 10, 40 and 70% protein content, an energy maintenance requirement of 383 +/- 31 (n = 105), 415 +/- 31 (n = 106) and 459 +/- 36 kJ metabolizable energy/kg LW0.75.d (n = 102). Energy maintenance requirement behaved relatively like 100:108:120. Based on the fact that energy maintenance requirement may be considered the requirement of ATP, relative expectancy values for energy maintenance requirement can be calculated with the energetic efficiency of the ATP synthesis (kJ metabolizable energy/Mol ATP gain) in nutrient catabolism from the relation of the experimentally ascertained nutrient metabolism at a variant supply of protein of 100:110:118. The hypothesis that the efficiency of ATP synthesis in the catabolism of the main nutrients supplying energy can be considered a relative measure of the dependence of the energy maintenance requirement on nutrient composition has been confirmed in this experiment. Different findings in earlier experiments raise the question if those findings were influenced by adaptation effects. An experimental solution of this question is considered important.     

Repeatability of fin length measurements using digital image analysis and studies of fin erosion as indicator of social interactions in Atlantic cod (Gadus morhua)

The aims of this study were to examine fin erosion caused by social interactions between Atlantic cod (Gadus morhua) juveniles, and to evaluate the repeatability of recorded fin length using digital image analysis (DIA). Fin length of 2100 juvenile Atlantic cod was analysed using DIA, during a 6 weeks experiment. The lengths of the three dorsal fins and the caudal fin were measured by three different assessors (M, K, B) three times during the experiment. Repeatability was based on a sub set of data from 42 randomly chosen fish. Assessor M measured the length of the fins of the 42 fish three times (M1, M2, M3). M1 and M2 were done on the same day, while M3 was conducted 2 weeks later. Assessor K measured two times with a 2‐year interval, and assessor B measured the fin length only once. The correlations between replicated measurements within assessor were highest for assessor M measured on the same day indicating an effect of memory. Repeatability of fin length ranged from 0.57 to 0.73 for the four fins. Social interaction with respect to fin erosion was studied using data on the four fins from all 2100 fish. ‘Relative fin length’ (fin length/total body length × 100) was calculated to assess fin erosion. Results indicated that all four fins were eroded due to social interactions, but the caudal fin was most severely eroded. In conclusion, DIA can be used to measured fin length but the method could be improved by using chromatic pictures.     

Assessing the food web impacts of an anadromous Arctic charr introduction to a sub‐Arctic watershed using stable isotopes

Anadromous Arctic charr, Salvelinus alpinus (L.), was introduced to a sub‐Arctic river–lake system near the village of Kujjuuaq, Nunavik, and the stable isotope values and diets of key resident fish species were used to assess changes in feeding patterns. Stable isotope values for most species did not differ significantly between the pre‐ and post‐introduction periods, with observed shifts being within the bounds of expected natural variation. Lake chub, Couesius plumbeus (Agassiz), were the single species to show a difference between study periods, with a small but significant increase in δ¹⁵N. No significant post‐introduction changes were seen in lake trout, Salvelinus namaycush (Walbaum), omnivory or in any of the assessed quantitative food web metrics. Gut contents of major fish species similarly showed significant temporal overlap between the pre‐ and post‐introduction periods, and there was no significant change in species' weight–length relationships. The minor ecological impact was interpreted in relation to the availability of open niches exploitable by ecological generalists such as Arctic charr. The explanation accords with the known habitat and feeding flexibility of Arctic charr and the ecological immaturity of sub‐Arctic lakes known to have driven adaptive variation among Arctic charr. Findings suggest that anadromous Arctic charr may be introduced at moderate densities to other sub‐Arctic watersheds without major negative food web consequences for other resident fish species.     

Metabolism of naturally occurring [13C]glucose given orally to horses

In 5 horses, 13CO2/12CO2 ratios in expired air were determined using isotope mass spectroscopy to investigate metabolism of naturally occurring [13C]glucose. Oral glucose tolerance tests (OGTT) were performed using maize or beet glucose. Maize has a higher 13C concentration than that of most plants. The 13CO2/12CO2 ratios after OGTT was performed using maize glucose were compared with 13CO2/12CO2 ratios in expired air after OGTT was performed using beet glucose. The ratio also was determined during the period horses were not fed. Using OGTT, all horses were glucose tolerant. The OGTT performed using beet glucose led to minimal changes in 13CO2/12CO2 ratios. The 13CO2/12CO2 ratios decreased significantly (P less than 0.01) when horses were not fed. After oral dosing with maize glucose, 13CO2/12CO2 ratios reached maximal increases 5 hours after dosing and reached baseline values 15 hours after dosing.     

24-hour national dietary survey data: how do we interpret them most effectively?

OBJECTIVE: To illustrate the effect of common mistakes when using 24-hour national dietary survey data to estimate the prevalence of inadequate nutrient intakes. DESIGN: Raw data on nutrient intake from the Australian 1995 National Nutrition Survey were adjusted for within-person variance using standard techniques and corrected for underreporting using the criteria of Goldberg et al. The distributions for six nutrients were compared with current dietary reference values from the UK, USA and Australia. SETTING: A national sample of the Australian population with a 61.4% response rate. RESULTS: Adjusting for within-person variance reduced the range of nutrient intakes to 66-80% of the raw data range and the proportion with intakes below the estimated average requirement (EAR) by up to 20%. Excluding underreporters further reduced the proportion below the EAR by up to 10%. Using the dietary reference values from different countries also resulted in some markedly different estimates. For example, the prevalence of low folate intakes ranged from < 1 to 92% for adult women depending on the reference used. Except for vitamin A and protein, the prevalence of low intakes was invariably higher for women than for men. CONCLUSIONS: Estimates of the prevalence of low nutrient intakes based on raw 24-hour survey data are invariably misleading. However, even after adjustment for within-person variance and underreporting, estimates of the prevalence of low nutrient intakes may still be misleading unless interpreted in the light of the reference criteria used and supported by relevant biochemical and physiological measures of nutritional status.     

Fluxes,residence times,and sources of some elements to Lake Michigan

Fluxes of 28 elements to Lake Michigan are calculated from literature data on sedimentation rates and concentrations in sediments and water. Lake Michigan residence times are roughly 10⁴ lower than oceanic residence times. A mass balance has been formulated for 24 elements, with soil and aerosol as the only sources. These sources provide fourfold excesses of Cu, Hg, Sb, Se, and V, and order of magnitude deficits for Ca, Mg, Na, and Cl, but account (to within 50%) for the observed inputs of Ag, Al, As, Br, Co, Cr, Fe, K, La, Mn, S, Si, Sc, Th, and Zn. Except for Al, Co, La, Si, and Th, deposition from aerosol accounts for at least one-fifth of the total input.