Structure discovery in Bayesian networks: an analytical tool for analysing complex animal health data

Analysing animal health data can be a complex task as the health status of individuals or groups of animals, might depend on many inter-related variables. The objective is to differentiate variables that are directly associated with health status and therefore promising targets for intervention, from variables that are indirectly associated with health status and can therefore at best only affect this indirectly through association with other variables. Bayesian network (BN) modelling is a machine learning technique for empirically identifying associations in complex and high dimensional data, so-called "structure discovery". An introduction to structure discovery using BN modelling is presented, comprising the key assumptions required by the methodology, along with a discussion of advantages and limitations. To demonstrate the various steps required to apply BN structure discovery to animal health data, illustrative analyses of data collected during a previously published study concerned with exposure to bovine viral diarrhoea virus in beef cow-calf herds in Scotland are presented.     

On-farm udder health monitoring

In this article an on-farm monitoring approach on udder health is presented. Monitoring of udder health consists of regular collection and analysis of data and of the regular evaluation of management practices. The ultimate goal is to manage critical control points in udder health management, such as hygiene, body condition, teat ends and treatments, in such a way that results (udder health parameters) are always optimal. Mastitis, however, is a multifactorial disease, and in real life it is not possible to fully prevent all mastitis problems. Therefore udder health data are also monitored with the goal to pick up deviations before they lead to (clinical) problems. By quantifying udder health data and management, a farm is approached as a business, with much attention for efficiency, thought over processes, clear agreements and goals, and including evaluation of processes and results. The whole approach starts with setting SMART (Specific, Measurable, Acceptable, Realistic, Time-bound) goals, followed by an action plan to realize these goals.     

Hepatozoon canis: The prevalence of antibodies and gametocytes in dogs in Israel

A survey for the prevalence of antibodies to Hepatozoon canis and for intraneutrophilic H. canis gametocytes in the peripheral blood neutrophils of dogs in Israel showed that 33.1% were seropositive, while only 1% of the dogs sampled had detectable parasites in their blood smears. Exposure to H. canis is widespread but it appears that most infected dogs undergo a subclinical infection and only a small proportion develop clinical disease.Abbreviations IFAT indirect fluorescent antibody test     

The alcelaphine herpesvirus-1 ORF 57 encodes a nuclear shuttling protein

Alcelaphine herpesvirus-1 (AlHV-1) is a γ₂ rhadinovirus associated with Malignant Catarrhal Fever (MCF) in cattle. ORF 57 is well conserved among gammaherpesviruses and it has been shown that the ORF 57 gene products of Herpesvirus Saimiri (HVS), Kaposi’s sarcoma-associated herpesvirus (KSHV) and Epstein-Barr virus (EBV) play an important role in regulating viral gene expression. The AlHV-1 ORF 57 gene product has not been characterized. In the accompanying paper we have demonstrated that AlHV-1 ORF 57 encodes an immediate early protein that acts as a regulator of gene expression. The ORF 57 gene product has an up-regulatory effect only on another immediate early gene product encoded by ORF 50. Here we show that the ORF 57 gene product is a nuclear protein. When ORF 57 was fused to the gene encoding Enhanced Green Fluorescent Protein (EGFP), the fusion protein exhibited a punctate nuclear distribution that co-localized with the nucleolar phosphoprotein C23. The nuclear localisation signal of ORF 57 gene product was located at the N-terminus. The ORF 57 gene product travels from nucleus to the cytoplasm, where it accumulates during Actinomycin D treatment. The domain involved in nuclear shuttling was also localised at the N-terminal region of the protein. Thus in common with homologues in other herpesviruses the AlHV-1 ORF 57 gene product is a nuclear cytoplasmic shuttling protein which may play a role in export of viral mRNAs from the nucleus of infected cells.     

Ultrasonic observations on the turnover of ovarian follicular cysts and associated changes of plasma LH, FSH, progesterone and oestradiol-17β in cows

Changes in the diameters of individual follicular structures on ovaries were measured by transrectal ultrasonography for 29 to 40 days and the plasma concentrations of luteinising hormone (LH), follicle-stimulating hormone (FSH), progesterone and oestradiol 17β were determined in four cows with ovarian cysts. When these structures decreased in size, new follicular structures appeared and developed into cysts. Progesterone concentrations in plasma were below 1·0 ng ml⁻¹ during the experimental periods. Plasma concentrations of oestradiol-17β fluctuated. The mean concentration of oestradiol-17β in plasma differed (P<0·01) depending on the stage of the cyst. No preovulatory surges of LH were detected during the developmental stage of the cysts.     

Production of H2S by Escherichia coli isolated from poultry: an unusual character useful for epidemiology of colisepticemia

Eleven isolates of H2S-producing Escherichia coli were recovered from necropsy materials of chickens with symptoms and lesions of colisepticemia on Saudi Arabian broiler farms. Results of 19 out of 20 biochemical reactions studied were typical for E. coli. Hydrogen sulfide production by the E. coli isolates was used as an epidemiological marker to pinpoint a breeding farm as the probable source of these strains, which were then transferred to progeny farms, where colisepticemia occurred. This finding was confirmed by the presence of the same antigenic structure (O78:H-) and by the same drug-resistance pattern (a multiple resistance to streptomycin, sulfathiazole, and tetracycline) in the isolates.     

Discriminant analysis for predicting dystocia in beef cattle. II. Derivation and validation of a prebreeding prediction model

Discriminant analysis was utilized to derive and validate a model for predicting dystocia using only data available at the beginning of the breeding season. Data were collected from 211 Chianina crossbred cows (2 to 6 yr old) bred to Chianina bulls. A proportionally stratified sampling procedure divided females into an analysis sample (n = 134) on which the model was derived and a hold-out sample (n = 77) on which the prediction model was validated (tested). Variables available during the derivation stage were cow age, cow weight, pelvic height, pelvic width, pelvic area and calf sire. Dystocia was categorized as either unassisted or assisted. Occurrence of dystocia was 17.2 and 18.2% in the analysis and hold-out samples, respectively. All data were standardized to a mean of zero and a variance of one before statistical analysis. The centroid of cows experiencing dystocia differed (P less than .01) from that of cows calving unassisted in the analysis sample. Significant variables were pelvic area and cow age (standardized coefficients = .56 and .51, respectively). This model correctly classified 85.1% of the cows in the analysis sample. This was 13.5% greater than the proportional chance criterion. For model validation, prediction accuracy was 84.4% in the hold-out group, which was 14.2% greater than the proportional chance criterion. However, only 57.1% of the cows that experienced dystocia were correctly classified. Examination of the data revealed that those cows misclassified were 3 yr of age or older.(ABSTRACT TRUNCATED AT 250 WORDS)     

Disease patterns in the Detroit Zoo: a study of reptilian and amphibian populations from 1973 through 1983

A retrospective study was conducted to determine disease patterns in reptilian and amphibian populations at the Detroit Zoo from 1973 through 1983. In the reptilian population (mean +/- SD = 285.2 +/- 28), overall annual mortality rates were 1% to 40%. Mortality rates were highest in the fall months (20%) and lowest in the winter months (6%). The most frequently affected reptiles were iguana (Iguana iguana), reticulated python (Python reticulatus), rattlesnakes (Crotalus spp), common boa (Constrictor constrictor), and lizards (various genera of suborder Lacertilia). Of the 1,300 reptilian deaths from 1973 through 1983, 36.6% were caused by microbial agents, 12% by parasites, 11.6% by trauma, and 9.3% by nutritional deficiencies. The main microbial organisms that caused death were Aeromonas spp, Salmonella spp, Pseudomonas spp, Proteus spp, and Edwardsiella spp. The main parasites that caused death were Entamoeba spp and lungworms. Among amphibians, frogs and toads were the most frequently affected, and starvation and trauma were the most frequent causes of death.     

Induction of diplodiosis, a neuromycotoxicosis, in domestic ruminants with cultures of indigenous and exotic isolates of Diplodia maydis

Diplodiosis, a neuromycotoxicosis, principally of cattle, which is characterized by ataxia, paresis and paralysis, was induced in 13 cattle, 16 sheep and 3 goats, by dosing them with Diplodia maydis [= D. zeae (Schw.) Lév.] cultured on sterilized maize seeds. The results of these experiments confirmed the findings of earlier workers that diplodiosis is a mycotoxicosis caused by D. maydis. The intoxication was induced with cultures of South African isolates of D. maydis obtained from local maize, one of which was associated with a suspected field outbreak, and with cultures of isolates from maize imported from the United States of America and Argentina. Other findings emerging from the experiments were, inter alia, that cultures incubated for less than 8 weeks were seemingly non-toxic, that there was little individual variation in response of cattle to cultures of the different toxic isolates or batches of the isolates, that apparent relapses of clinical signs can occur several weeks after dosing had ceased and that a small percentage of animals can show permanent locomotory disturbance. Light microscopical examination revealed no lesions in acutely affected animals, but an extensive laminar subcortical status spongiosis was evident in the cerebrum and cerebellum of a sheep that had been long paralysed and a steer that had permanent locomotory disturbance.